ID: uc001iaw.1_intron_4_0_chr1_245019928_r
GENE: (3)
chr1:245019878-245020079-


(2)
AGO2.ip 		(2)
B-CELL 		(4)
BREAST 		(27)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(7)
HELA 		(4)
LIVER 		(1)
OTHER 		(27)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AATTTATTGAGATTGCTGCCCGAAAGAAGCGAAATTTTATTCTGGATCAGGTACGCTGTAGCTTTGAAATTGAAAAATATTAACTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAGACAAATGTGTCTGCTGCTGCCCAGAGGAGAAAAATGTGCCTGTTTGCAGG
......................................................................(((((((......((((....)))).............(((((.(((((((......))))))).)))))..))))))).....................................................
......................................................................71...............................................................................152................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTACGCTGTAGCTTTGAAATTGAAAAATATTAACTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................102121.0021.0015.006.00-------------------------------------------------------------------------------
...TTATTGAGATTGCTGCCC.....................................................................................................................................................................................18114.0014.00----8.00---6.00------------------------------------------------------------------------
..................................................GTACGCTGTAGCTTTGAAATTGAAAAATATTAACTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAAC......................................................................82111.0011.00-10.00------------------------------------------------------------1.00------------------
............................................................................................TAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................6017.007.007.00--------------------------------------------------------------------------------
......................................................................................ATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAA...................................................6515.005.00-5.00-------------------------------------------------------------------------------
....................................................................................TGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTAAAG...................................................674.000.004.00--------------------------------------------------------------------------------
....................................................................................TGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATT...............................................................5514.004.00-4.00-------------------------------------------------------------------------------
.................................................................................................................................................................TCTGCTGCTGCCCAGAGG.......................1813.003.00-----3.00---------------------------------------------------------------------------
..........................AAGCGAAATTTTATTCTGGATCAGACA.....................................................................................................................................................2713.001.00---1.00--2.00--------------------------------------------------------------------------
...........ATTGCTGCCCGAAAGAAGCGAAA........................................................................................................................................................................2313.003.00----------2.00------------------------------------------------------------------1.00---
..........................................................................................................................................................AAATGTGTCTGCTGCTG...............................1722.502.50-----------2.50---------------------------------------------------------------------
.................................................................................................................................AACATAAATTTCTTTTTTCTTG...................................................222.000.00------------------2.00--------------------------------------------------------------
..........................................................................................................................................................AAATGTGTCTGCTGCTGCCCAGAGG.......................2512.002.00------2.00--------------------------------------------------------------------------
...........................................................................................................................................................AATGTGTCTGCTGCTGCCCAGAGGAG.....................2612.002.00--1.00------------------------------------1.00-----------------------------------------
..............................................................................................................................................................................AGAGGAGAAAAATGTGCC..........1812.002.00---2.00-----------------------------------------------------------------------------
..............................................................................................................................................................................AGAGGAGAAAAATGTGCCTGT.......2112.002.00--2.00------------------------------------------------------------------------------
......................................ATTCTGGATCAGGTACG...................................................................................................................................................1712.002.00--------------------------------------------1.00-----1.00------------------------------
.....................................................................................GATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................6712.002.002.00--------------------------------------------------------------------------------
................................................................................................TAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................5612.002.00---------------------2.00-----------------------------------------------------------
.........................GAAGCGAAATTTTATTCTGGATCAGAC......................................................................................................................................................272.000.00-----------------------2.00---------------------------------------------------------
.....ATTGAGATTGCTGCCCGA...................................................................................................................................................................................1812.002.00-------------2.00-------------------------------------------------------------------
...........................AGCGAAATTTTATTCTGGATCAGAC......................................................................................................................................................252.000.00--2.00------------------------------------------------------------------------------
............TTGCTGCCCGAAAGAAGCGAA.........................................................................................................................................................................2112.002.00---------------2.00-----------------------------------------------------------------
...........................................................................AATATTAACTGATAATTTAGA..........................................................................................................2112.002.00------2.00--------------------------------------------------------------------------
...................................................................................CTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................6912.002.002.00--------------------------------------------------------------------------------
................................AATTTTATTCTGGATCAG........................................................................................................................................................1812.002.00-----------------2.00---------------------------------------------------------------
.....................................................................................................................TTTAGGGTTGTAAACATA...................................................................1812.002.00-----------2.00---------------------------------------------------------------------
.........................................................................................................GTAGAATTAATGTTTAGGGTTGTAAACATAAA.................................................................3212.002.00------------1.00---1.00----------------------------------------------------------------
................................................................................................................TAATGTTTAGGGTTGTAAACA.....................................................................2112.002.00----------------------2.00----------------------------------------------------------
..................................TTTTATTCTGGATCAG........................................................................................................................................................1621.501.50--------------0.50--1.00---------------------------------------------------------------
..................................................GTACGCTGTAGCTTTGAAATTGAAAAATATTAACTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTT........................................................9611.001.00-1.00-------------------------------------------------------------------------------
..........GATTGCTGCCCGAAAGAAGC............................................................................................................................................................................2011.001.00-------------------------------------------------------------1.00-------------------
......TTGAGATTGCTGCCCGAAAGAAGCG...........................................................................................................................................................................2511.001.00--------------------------1.00------------------------------------------------------
..TTTATTGAGATTGCTGCCCGAAAGAAGCGAA.........................................................................................................................................................................3111.001.00-------------------1.00-------------------------------------------------------------
...........................................................................................................................................................AATGTGTCTGCTGCTGCCCAGAG........................2311.001.00--------------------1.00------------------------------------------------------------
.....................................................................................................TGGTGTAGAATTAATGTTTAGGGTTGTAAACA.....................................................................3211.001.00-------------------1.00-------------------------------------------------------------
............TTGCTGCCCGAAAGAAGCG...........................................................................................................................................................................1911.001.00-----1.00---------------------------------------------------------------------------
...........................AGCGAAATTTTATTCTGGATCAGACAA....................................................................................................................................................271.000.00-------1.00-------------------------------------------------------------------------
.................................................................................................................................AACATAAATTTCTTTTTTTAA....................................................2111.001.00----------1.00----------------------------------------------------------------------
...............................................................................................................................................................................GAGGAGAAAAATGTGCCT.........1811.001.00---------1.00-----------------------------------------------------------------------
..................................................................................ACTGATAATTTAGATAGATTGG..................................................................................................2211.001.00--------------1.00------------------------------------------------------------------
.................................ATTTTATTCTGGATCAGA.......................................................................................................................................................1811.001.00--------------------------------------1.00------------------------------------------
................................AATTTTATTCTGGATCAGACA.....................................................................................................................................................2111.002.00-------1.00-------------------------------------------------------------------------
......TTGAGATTGCTGCCCGAAAG................................................................................................................................................................................2011.001.00-------1.00-------------------------------------------------------------------------
..................................................................................................................................ACATAAATTTCTTTTTTTCTTG..................................................221.000.00------------------1.00--------------------------------------------------------------
..........................................................................................TTTAGATAGATTGGTGTAGAATTA........................................................................................2411.001.00---------------------------------------------1.00-----------------------------------
..................CCCGAAAGAAGCGAAATTTTATTCTGGATCAG........................................................................................................................................................3211.001.00-------------------------------------------------1.00-------------------------------
.........................................................GTAGCTTTGAAATTGAAAAATA...........................................................................................................................2211.001.00---------------------------------------------------------1.00-----------------------
...............................AAATTTTATTCTGGATCAGACA.....................................................................................................................................................221.000.00-------1.00-------------------------------------------------------------------------
.............................................................................................AGATAGATTGGTGTAGAAT..........................................................................................1911.001.00---------1.00-----------------------------------------------------------------------
............TTGCTGCCCGAAAGAAGCGAAAT.......................................................................................................................................................................2311.001.00-------------1.00-------------------------------------------------------------------
........GAGATTGCTGCCCGAAAGAAGC............................................................................................................................................................................2211.001.00---------1.00-----------------------------------------------------------------------
...........................................................................................................................................................AATGTGTCTGCTGCTGCCCAGAGGA......................2511.001.00------------------------------------------------1.00--------------------------------
..................................................GTACGCTGTAGCTTTGAAATTGAAAAATATT.........................................................................................................................3111.001.00----------------1.00----------------------------------------------------------------
...........................................................................................................................................................AATGTGTCTGCTGCTGCCCAGAGGAGA....................2711.001.00--------------------1.00------------------------------------------------------------
...............................................................................................................................................................TGTCTGCTGCTGCCCAGAGGAGAAAAATGCG............311.000.00----------1.00----------------------------------------------------------------------
...TTATTGAGATTGCTGCCCGAAAGAAGCGAAAT.......................................................................................................................................................................3211.001.00----------------------------------------------------------------------1.00----------
..................................................GTACGCTGTAGCTTTGAAATT...................................................................................................................................2111.001.00------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................AGAGGAGAAAAATGTGCCTG........2011.001.00-----------------------------------------1.00---------------------------------------
.............................CGAAATTTTATTCTGGAT...........................................................................................................................................................1811.001.00------------------------------------------------------------1.00--------------------
..TTTATTGAGATTGCTGCCCGA...................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00---------------------------
....TATTGAGATTGCTGCCCGAAAGAAGCGAAATT......................................................................................................................................................................3211.001.00-----------------------------------------------------------------------1.00---------
..............................GAAATTTTATTCTGGATCAGA.......................................................................................................................................................211.000.00-------------------------------------------1.00-------------------------------------
........................................................................................................................................ATTTCTTTTTTTAAAGCGGG..............................................201.000.00-------------------------------------------------------1.00-------------------------
...................................................................................................................................CATAAATTTCTTTTTTTTTTG..................................................211.000.00------------------------------------1.00--------------------------------------------
...................................................................................................................................CATAAATTTCTTTTTTTTTG...................................................201.000.00-----------------------------1.00---------------------------------------------------
..........................AAGCGAAATTTTATTCTGGATCAGATA.....................................................................................................................................................2711.001.00---1.00-----------------------------------------------------------------------------
..........GATTGCTGCCCGAAAGA...............................................................................................................................................................................1711.001.00------------------------------------------------------1.00--------------------------
.......................................................................................................................TAGGGTTGTAAACATAAATTTCTTTTTT.......................................................2811.001.00-----1.00---------------------------------------------------------------------------
....................................................................................................TTGGTGTAGAATTAATGTTTAGGGTTGTAAA.......................................................................3111.001.00----------------------------------1.00----------------------------------------------
..............................................................................................................................................................................AGAGGAGAAAAATGTGCCTGTT......2211.001.00---------1.00-----------------------------------------------------------------------
...........................................................................................................................................................AATGTGTCTGCTGCTGCCCAGAGG.......................2411.001.00--1.00------------------------------------------------------------------------------
.....................................................................................................................................................................CTGCTGCCCAGAGGAGAAAAATGT.............2411.001.00--------------------------------------------------------------------------1.00------
......................AAAGAAGCGAAATTTTATTCTGG.............................................................................................................................................................2311.001.00-------------------------1.00-------------------------------------------------------
...TTATTGAGATTGCTGCCCGAAAGA...............................................................................................................................................................................2411.001.00----------------------------------------------------1.00----------------------------
....................CGAAAGAAGCGAAATTTTATTCTGGA............................................................................................................................................................2611.001.00----------------------------------------------------------1.00----------------------
..................................................GTACGCTGTAGCTTTGAAA.....................................................................................................................................1911.001.00-------------------------------------------------------------------------1.00-------
.................................ATTTTATTCTGGATCAG........................................................................................................................................................1711.001.00--------------1.00------------------------------------------------------------------
...........................AGCGAAATTTTATTCTGGATCAGACA.....................................................................................................................................................261.000.00----------------------------------------1.00----------------------------------------
..........................................................................................................................................................AAATGTGTCTGCTGCTGCCCAGAGGA......................2611.001.00----------------------------------------------------------------1.00----------------
.....................................................................................GATAATTTAGATAGATTGGTGTA..............................................................................................2311.001.00---1.00-----------------------------------------------------------------------------
.........................................................................................................................................................CAAATGTGTCTGCTGCTGCCC............................2111.001.00-------1.00-------------------------------------------------------------------------
.................................................................................................................................................................TCTGCTGCTGCCCAGAGGAG.....................2011.001.00---------------------------------------------------------------1.00-----------------
..............................................................................................................................................................GTGTCTGCTGCTGCCCAGAGGAG.....................2311.001.00--1.00------------------------------------------------------------------------------
...........................................................................................TTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................6111.001.001.00--------------------------------------------------------------------------------
..........................AAGCGAAATTTTATTCTGGATCAG........................................................................................................................................................2411.001.00---------------------------1.00-----------------------------------------------------
.............................................................................................................................................................TGTGTCTGCTGCTGCCCAGAGGA......................2311.001.00----------------------------------------------1.00----------------------------------
...................................................TACGCTGTAGCTTTGAAATTGA.................................................................................................................................2211.001.00-------------------------------------------------------------------1.00-------------
.........................................CTGGATCAGGTACGCTGT...............................................................................................................................................1811.001.00--------------1.00------------------------------------------------------------------
.......................................................................................................GTGTAGAATTAATGTTTAGGGTAA...........................................................................241.000.00-------------1.00-------------------------------------------------------------------
..............................................................................................GATAGATTGGTGTAGAATTAATGTTTAGGG..............................................................................3011.001.00---------------------------------1.00-----------------------------------------------
..................................................................................................................................ACATAAATTTCTTTTTTTTTG...................................................211.000.00------------------------------------------------------------------1.00--------------
...................................................TACGCTGTAGCTTTGAAATTGAAAAATATTAACTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................10111.001.001.00--------------------------------------------------------------------------------
.........................................................GTAGCTTTGAAATTGAAAAAT............................................................................................................................2111.001.00--------------------------------------------------------------------1.00------------
..................CCCGAAAGAAGCGAAA........................................................................................................................................................................1611.001.00--------------------------------------------------------1.00------------------------
...............................AAATTTTATTCTGGATCAGGTACGCT.................................................................................................................................................2611.001.00---1.00-----------------------------------------------------------------------------
......TTGAGATTGCTGCCCGAAAGAAGCGAAATTTTATT.................................................................................................................................................................3511.001.00-----------------------------------------------1.00---------------------------------
...................CCGAAAGAAGCGAAAT.......................................................................................................................................................................1611.001.00-------------------------------1.00-------------------------------------------------
..................................................GTACGCTGTAGCTTTGAAATTGAAAAATATTA........................................................................................................................3211.001.00------------1.00--------------------------------------------------------------------
...TTATTGAGATTGCTGCCCGAAAGAA..............................................................................................................................................................................2511.001.00------------------------------------------------------------------------1.00--------
.........................................................................................................GTAGAATTAATGTTTAGGGTTGTAAACATAA..................................................................3111.001.00----------------1.00----------------------------------------------------------------
...................CCGAAAGAAGCGAAATTTTATTC................................................................................................................................................................2311.001.00-----------------------------------1.00---------------------------------------------
.....................................................................................GATAATTTAGATAGATTGGTATA..............................................................................................231.000.00---1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................GGAGAAAAATGTGCCTGTTTGCGGC251.000.00---------------------------------------------------------------------1.00-----------
...............................................................................................................................................................TGTCTGCTGCTGCCCAGAGGAGAAAAAAG..............291.000.00----------1.00----------------------------------------------------------------------
............................................................................................................................................................ATGTGTCTGCTGCTGCCCAGAGG.......................2311.001.00--1.00------------------------------------------------------------------------------
....................................................................................TGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................6811.001.00---------------------------------------------------------------------------1.00-----
......TTGAGATTGCTGCCCGAAAGAAG.............................................................................................................................................................................2311.001.00-----1.00---------------------------------------------------------------------------
.................................................................................................................................AACATAAATTTCTTTAATA......................................................191.000.00---1.00-----------------------------------------------------------------------------
............................GCGAAATTTTATTCTGGATC..........................................................................................................................................................2011.001.00---------------1.00-----------------------------------------------------------------
.........................GAAGCGAAATTTTATTCTGGATCA.........................................................................................................................................................2411.001.00-------1.00-------------------------------------------------------------------------
......................................................................................................................................AAATTTCTTTTTTTACAG..................................................181.000.00----------1.00----------------------------------------------------------------------
.....................................................................................................................................................................CTGCTGCCCAGAGGAGAAAAATGTGC...........2611.001.00---------------------------1.00-----------------------------------------------------
...........................................................................................................................................................AATGTGTCTGCTGCTGCCCAGAGGAGAA...................2811.001.00---------1.00-----------------------------------------------------------------------
......................................................................................................................................................................................AAAATGTGCCTGTTTGCAGGCTTT241.000.00------------------------1.00--------------------------------------------------------
...................................................TACGCTGTAGCTTTGAATTCT..................................................................................................................................211.000.00------------------------------------------1.00--------------------------------------
...................CCGAAAGAAGCGAAATT......................................................................................................................................................................1711.001.00----------------------------1.00----------------------------------------------------
.......................................................................................TAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAG..................................................6511.001.001.00--------------------------------------------------------------------------------
....TATTGAGATTGCTGCCCGAAAGAAGC............................................................................................................................................................................2611.001.00--------------------------1.00------------------------------------------------------
........................................................................................................TGTAGAATTAATGTTTAGGGTTGTAAAC......................................................................2811.001.00------------------------------1.00--------------------------------------------------
........................AGAAGCGAAATTTTATTCTGGATCA.........................................................................................................................................................2511.001.00----------------------------------------------------------------------------1.00----
..............................................................................................GATAGATTGGTGTAGAATT.........................................................................................1911.001.00-----1.00---------------------------------------------------------------------------
...........................AGCGAAATTTTATTCTGGAT...........................................................................................................................................................2011.001.00--------------------------------1.00------------------------------------------------
.......................AAGAAGCGAAATTTTATTCTGGATCAGACA.....................................................................................................................................................301.000.00--1.00------------------------------------------------------------------------------
.ATTTATTGAGATTGCTGCCCG....................................................................................................................................................................................2111.001.00-----------------------------------------------------------1.00---------------------
............................GCGAAATTTTATTCTGGATCAG........................................................................................................................................................2211.001.00-------------------------------------1.00-------------------------------------------
..........................................................................................................................................................AAATGTGTCTGCTGCTGCCCAGAGGAGAA...................2911.001.00---------1.00-----------------------------------------------------------------------
...................................................................................................ATTGGTGTAGAATTAATGTTTAGGGTTG...........................................................................2811.001.00-------------------------1.00-------------------------------------------------------
...................CCGAAAGAAGCGAAA........................................................................................................................................................................1520.500.50----------------------------0.50----------------------------------------------------
.........................................................................................ATTTAGATAGATTGGTGT...............................................................................................1820.500.50---0.50-----------------------------------------------------------------------------
.................................................................................................................................................................................GGAGAAAAATGTGCCTGT.......1820.500.50------------------------------------------------------------------------------0.50--
.......................................................................................................GTGTAGAATTAATGTTT..................................................................................1740.250.25-------------------0.25-------------------------------------------------------------
..................................................................................................................................................................CTGCTGCTGCCCAGAGG.......................1750.200.20-------------------------------------------------------------------------------0.20-
...............................................................................................ATAGATTGGTGTAGA............................................................................................1570.140.14--------------------------------------------------------------------------------0.14

Antisense strand
AATTTATTGAGATTGCTGCCCGAAAGAAGCGAAATTTTATTCTGGATCAGGTACGCTGTAGCTTTGAAATTGAAAAATATTAACTGATAATTTAGATAGATTGGTGTAGAATTAATGTTTAGGGTTGTAAACATAAATTTCTTTTTTTAAAGACAAATGTGTCTGCTGCTGCCCAGAGGAGAAAAATGTGCCTGTTTGCAGG
......................................................................(((((((......((((....)))).............(((((.(((((((......))))))).)))))..))))))).....................................................
......................................................................71...............................................................................152................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................AAACATAAATTTCTTTTTTA...................................................... 201.000.00---------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................ACAGGCACATTTTTC....... 1501.001.00------------1.00--------------------------------------------------------------------
.....................................................................................................................................................................TTCTCCTCTGGGCAGCAG................... 1811.001.00------------1.00--------------------------------------------------------------------
.............................................................................................................................................................................CACATTTTTCTCCTCTG............ 1760.170.17-----------------------------0.17---------------------------------------------------