ID: uc001iav.2_intron_0_0_chr1_245008647_r.3p
GENE: (1)
chr1:245008597-245008846-


(6)
B-CELL 		(5)
BREAST 		(20)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TAGGGTAGACATTGATAGGAGAGACTTTCGTTCTACCAGTCTCTCCTTATTGAGGGTGGGTGTTACAGACTTTGGTAATTTATTAATACACTTGTAAAATCTTAATAGCATAAGAATAAAAATTATTAGTGATCATGTAAATACATGAAACATTTAAAAAATAATCCAACCAAATATGTTACAACTTTGTTTTTATCCAGGTTTCCAGTTTATGCAAACTTCTGTGAAAATGAGCTTTGTTATTGGTGAA
.....................................................((((((((((.(((...((((((...(((((....((((.((((..(((((......))))).......)))).)))).((((((....))))))...........)))))....))))))..))).)))........)))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM532881(GSM532881)
G696N. (cervix)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCAG..................................................24119.0019.004.002.00-2.00-1.00-1.00-2.00---2.00----2.00------1.00--------------1.00---1.00-------
...............................................................................................................................................................................ATGTTACAACTTTGTTTTTATCCAGA.................................................26110.006.009.00------1.00--------------------------------------------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCAGA.................................................2516.0019.00-2.001.001.001.00------------------------------------1.00----------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCAGGTT...............................................2716.006.00--5.00----1.00--------------------------------------------
...............................................................................................................................................................................ATGTTACAACTTTGTTTTTATCCAG..................................................2516.006.001.00--1.00----------2.00-1.00--------------------------1.00--------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCAGAA................................................2615.0019.00-3.00-1.00--------1.00---------------------------------------
.....TAGACATTGATAGGAGAGACTTT..............................................................................................................................................................................................................................2313.003.00------3.00---------------------------------------------
...............................................................................................................................................................................ATGTTACAACTTTGTTTTTATCCAGAA................................................2712.006.00----2.00-----------------------------------------------
.........................................................................................................................................................TTAAAAAATAATCCAACTCG.............................................................................202.000.00-----2.00----------------------------------------------
.................................................................................................................................................................................GTTACAACTTTGTTTTTATCCAG..................................................2312.002.00---------------2.00------------------------------------
..............................................................................................................................................................................TATGTTACAACTTTGTTTTTATCCAG..................................................2612.002.00-----------1.00------------------------------1.00---------
......................................................................................................................................................................................AACTTTGTTTTTATCAACC.................................................191.000.00-----------------------------------------------1.00----
.......................................................................................................................................................................................................GGTTTCCAGTTTATGCA..................................1711.001.00--------------------------1.00-------------------------
................................................................................................................................................................................TGTTACAACTTTGTTTTT........................................................1811.001.00--------1.00-------------------------------------------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCATG.................................................2511.001.00-------------------------------------1.00--------------
..GGGTAGACATTGATAGGAGAGAC.................................................................................................................................................................................................................................2311.001.00----------------------------1.00-----------------------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATC.....................................................2111.001.00----------1.00-----------------------------------------
...............................................................................................................................................................................ATGTTACAACTTTGTTTTTATC.....................................................2211.001.00----------1.00-----------------------------------------
...............................................................................................................................................................................ATGTTACAACTTTGTTTTTATCCAGG.................................................2611.001.00-----------1.00----------------------------------------
..GGGTAGACATTGATAGGAGAGACTTT..............................................................................................................................................................................................................................2611.001.00---------------------------------1.00------------------
..GGGTAGACATTGATAGGAG.....................................................................................................................................................................................................................................1911.001.00---------------------------1.00------------------------
..GGGTAGACATTGATAGGAGAGACTTTCA............................................................................................................................................................................................................................281.000.00----------------------1.00-----------------------------
.............................................................................................................................................................................ATATGTTACAACTTTGTTTT.........................................................2011.001.00-------------------------------1.00--------------------
.AGGGTAGACATTGATAGGA......................................................................................................................................................................................................................................1911.001.00--------------------------------1.00-------------------
.AGGGTAGACATTGATAGGAGAGACT................................................................................................................................................................................................................................2511.001.00----------------------------------1.00-----------------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCAGGT................................................2611.001.00----1.00-----------------------------------------------
...............................................................................................................................................................................ATGTTACAACTTTGTTTTTATCCAT..................................................251.000.00-----------------------1.00----------------------------
...................................................GAGGGTGGGTGTTACAGACT...................................................................................................................................................................................2011.001.00--------------------------------------1.00-------------
....GTAGACATTGATAGGAGAGACTTT..............................................................................................................................................................................................................................2411.001.00------------------------1.00---------------------------
................................................ATTGAGGGTGGGTGTTACAGACTTCGG...............................................................................................................................................................................271.000.00------------------------------------1.00---------------
............TGATAGGAGAGACTTTCG............................................................................................................................................................................................................................1811.001.00---------------------------------------1.00------------
...GGTAGACATTGATAGGAGAGACTTTAA............................................................................................................................................................................................................................271.000.00----------------1.00-----------------------------------
................................................................................................................................................................................TGTTACAACTTTGTTTTTATCCA...................................................2311.001.00------------1.00---------------------------------------
...............................................................................................................................................................................................................................GTGAAAATGAGCTTTGTT.........1811.001.00-----------------------------1.00----------------------
............................................................................................................................................................AAAAATAATCCAACCAACCT..........................................................................201.000.00--------------------1.00-------------------------------
.AGGGTAGACATTGATAGGAGAGACTT...............................................................................................................................................................................................................................2611.001.00---------------------------------------------1.00------
.......................................................................................................................................................................................................................AAACTTCTGTGAAAATGAG................1920.500.50--------------------------------------------------0.50-
....GTAGACATTGATAGGAGA....................................................................................................................................................................................................................................1820.500.50------------------------------------------------0.50---

Antisense strand
TAGGGTAGACATTGATAGGAGAGACTTTCGTTCTACCAGTCTCTCCTTATTGAGGGTGGGTGTTACAGACTTTGGTAATTTATTAATACACTTGTAAAATCTTAATAGCATAAGAATAAAAATTATTAGTGATCATGTAAATACATGAAACATTTAAAAAATAATCCAACCAAATATGTTACAACTTTGTTTTTATCCAGGTTTCCAGTTTATGCAAACTTCTGTGAAAATGAGCTTTGTTATTGGTGAA
.....................................................((((((((((.(((...((((((...(((((....((((.((((..(((((......))))).......)))).)))).((((((....))))))...........)))))....))))))..))).)))........)))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM532881(GSM532881)
G696N. (cervix)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................AGTGATCATGTAAATCCCG........................................................................................................ 192.000.00-----1.00------------------------1.00---------------------
.....................................CACCCTCAATAAGGAGAGACT................................................................................................................................................................................................ 2111.001.00-----------------1.00----------------------------------
......................GACTTTCGTTCTACCGG................................................................................................................................................................................................................... 171.000.00---------------------1.00------------------------------
.................................AATAAGGAGAGACTGGTA....................................................................................................................................................................................................... 1811.001.00-----------------1.00----------------------------------
...............................AATAAGGAGAGACTGGTAGA....................................................................................................................................................................................................... 2011.001.00----1.00-----------------------------------------------
.........................AATAAGGAGAGACTGGTAGAACGAAA....................................................................................................................................................................................................... 2611.001.00-------------------1.00--------------------------------
.............GATAGGAGAGACTTTTTCA.......................................................................................................................................................................................................................... 191.000.00----------------------------------------------1.00-----
......................................................................................................................................................TTTGGTTGGATTATTTTTTAAATG............................................................................ 2411.001.00-----------------------------------1.00----------------
............................................................................................................................................................CATATTTGGTTGGATTATTTTT........................................................................ 2211.001.00--------1.00-------------------------------------------
........................................ACCCTCAATAAGGAGAG................................................................................................................................................................................................. 1720.500.50-------------------------------------------------0.50--
................................AAGGAGAGACTGGTAG.......................................................................................................................................................................................................... 1630.330.33---------------------------------------------------0.33