ID: uc001hzl.3_intron_2_0_chr1_242271142_r.5p
GENE: (7)
chr1:242276992-242277241-


(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(3)
B-CELL
(7)
BRAIN
(7)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(1)
OTHER
(4)
SKIN
(1)
UTERUS

Sense strand
TACATCGCTGTCATGGACTACCTGCCTATCTCCAGCACAAGCACCAAAAGGTCAGTGAATGCCCAGCCTCTGGTTAGAACCCAGTCCCTAAGACCAGGCACTAAACTGGGCACCACAGGAGAAGCCAGCCTGGAAATGGAGATGCCATCAGGTTGCCTTAGGAAGAGCACACCATTCATTGCTGTTTAACATGCATTGGCAATTTACTCATTACGGAGCTTTTCCCAAAGTGGGTCCATTTTGAAGGCTC
.........................................................................................................................(((.(((((((...((((.....))))))))))).)))..(((.((((..........)))).)))...............................................................
.............................................................................................................110................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................ACCATTCATTGCTGTCGGT.............................................................1945.000.004.005.005.003.005.005.002.001.002.002.00-1.00---1.001.001.00-1.00----1.001.00---1.00---1.001.001.00-
..........................................................................................................................................................................ACCATTCATTGCTGTCGGG.............................................................198.000.002.00--1.00---2.001.00-----------1.00----------1.00-----
..........................................................................................................................................................................ACCATTCATTGCTGTCGG..............................................................186.000.002.00--------1.00---1.00--------1.00---------1.00----
..........................................................................................................................................................................ACCATTCATTGCTGTCGGC.............................................................192.000.00---1.00--1.00------------------------------
..........................................................................................................................................................................ACCATTCATTGCTGTTGGTG............................................................202.000.00-1.00--------1.00--------------------------
..........................................................................................................................................................................ACCATTCATTGCTGTCGGA.............................................................192.000.00-------1.00------------------1.00----------
..........................................................................................................................................................................ACCATTCATTGCTGTCGTT.............................................................191.000.001.00------------------------------------
..................................................................................................................ACAGGAGAAGCCAGCCAA......................................................................................................................181.000.00------------1.00------------------------
..........................................................................................................................................................................ACCATTCATTGCTGTCGCA.............................................................191.000.001.00------------------------------------
.........................................................................................................................................................................CACCATTCATTGCTGTCGGT.............................................................201.000.00------1.00------------------------------
..CATCGCTGTCATGGACTACCTG..................................................................................................................................................................................................................................2211.001.00--1.00----------------------------------
..........................................................................................................................................................................ACCATTCATTGCTGTCTTT.............................................................191.000.00-----------1.00-------------------------
.............................................................CCCAGCCTCTGGTTACCT...........................................................................................................................................................................181.000.00-----------------------1.00-------------
..........................................................................................................................................................................ACCATTCATTGCTGTAGTC.............................................................191.000.00-1.00-----------------------------------
..........................................................................................................................................................................ACCATTCATTGCTGTTGGT.............................................................191.000.00--------------1.00----------------------
..........................................................................................................................................................................ACCATTCATTGCTGTCTGA.............................................................191.000.00------------------------------1.00------
..........................................................................................................................................................................ACCATTCATTGCTGTCGCG.............................................................191.000.00---------------------1.00---------------
.................................................................................................................................................CATCAGGTTGCCTTAGGAAGAGCG.................................................................................241.000.00------------1.00------------------------
..........................................................................................................................................................................ACCATTCATTGCTGTCGCT.............................................................191.000.00------------------1.00------------------
..........................................................................................................................................................................ACCATTCATTGCTGTCGTG.............................................................191.000.001.00------------------------------------

Antisense strand
TACATCGCTGTCATGGACTACCTGCCTATCTCCAGCACAAGCACCAAAAGGTCAGTGAATGCCCAGCCTCTGGTTAGAACCCAGTCCCTAAGACCAGGCACTAAACTGGGCACCACAGGAGAAGCCAGCCTGGAAATGGAGATGCCATCAGGTTGCCTTAGGAAGAGCACACCATTCATTGCTGTTTAACATGCATTGGCAATTTACTCATTACGGAGCTTTTCCCAAAGTGGGTCCATTTTGAAGGCTC
.........................................................................................................................(((.(((((((...((((.....))))))))))).)))..(((.((((..........)))).)))...............................................................
.............................................................................................................110................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
...........CATGGACTACCTGCCTATCTCCAGCATCAG................................................................................................................................................................................................................. 301.000.00---------------------------1.00---------
....................................ACAAGCACCAAAAGGTACC................................................................................................................................................................................................... 191.000.00----------------------------1.00--------
......................TGCCTATCTCCAGCACAAAG................................................................................................................................................................................................................ 201.000.00----------1.00--------------------------
........................TTGTGCTGGAGATAGG.................................................................................................................................................................................................................. 1620.500.50------------------------------------0.50