| (2) B-CELL | (1) BREAST | (16) CELL-LINE | (1) CERVIX | (5) HELA | (2) OTHER | (1) RRP40.ip | (4) SKIN | (1) XRN.ip |
| GACACCAACTCCTGCAGAGACAGATAGAGACTAGCAAACTGTGTCTGCTTTCAGTAATGCTGATGTATAAAGTAAGGAGACTCCATTTAAGTCATAAACCTATGGATTTTCGTGACAATAGAAAACATTTTTCCATCTTAGTATAATATCATTTGGTTGGTTGTTAATAAATACATTTTTCCTTAATCTTGCTAATCTAGATATGTTGATGATTCCATAGCTCTTCAAATAGCACTTGGAAATAAAGATA ...........................................................................(((((.(((((...............)))))(((((.........)))))....)))))....................(((((((.(((((..((.......))..)))))...)))))))..................................................... ..........................................................................75...........................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR037931(GSM510469) 293GFP. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207116(GSM721078) Nuclear RNA. (cell line) | GSM416733(GSM416733) HEK293. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189784 | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR040042(GSM532927) G428N. (cervix) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | SRR033718(GSM497063) Multiple Myeloma (U266). (B cell) | SRR029124(GSM416753) HeLa. (hela) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR191557(GSM715667) 57genomic small RNA (size selected RNA from t. (breast) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR189785 | SRR037934(GSM510472) 293cand4_rep3. (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM359177(GSM359177) hela_nucl_a. (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................TTCCTTAATCTTGCTAATCTAGA................................................. | 23 | 1 | 36.00 | 36.00 | 6.00 | 5.00 | 10.00 | 5.00 | 1.00 | 1.00 | - | 1.00 | 2.00 | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................................................................................................................TTTCCTTAATCTTGCTAATCTAG.................................................. | 23 | 1 | 27.00 | 27.00 | 8.00 | 1.00 | - | - | 3.00 | 3.00 | 4.00 | 2.00 | 1.00 | 1.00 | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................................................................................................TTCCTTAATCTTGCTAATCTAG.................................................. | 22 | 1 | 23.00 | 23.00 | 16.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTTCCTTAATCTTGCTAATCTAGA................................................. | 24 | 1 | 4.00 | 4.00 | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTTCCTTAATCTTGCTAATCTAGT................................................. | 24 | 1 | 4.00 | 27.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................TTTTCCTTAATCTTGCTAATCTAG.................................................. | 24 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TTCCTTAATCTTGCTAAT...................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................................................................TTTCCTTAATCTTGCTAATCTAGAA................................................ | 25 | 1 | 1.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TTCCTTAATCTTGCTAATC..................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTTCCTTAATCTTGCTAATCTCG.................................................. | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................ACTCCATTTAAGTCACTTT........................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTCCTTAATCTTGCTAATCTAGC................................................. | 23 | 1 | 1.00 | 23.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................ATTCCATAGCTCTTCAAACAG.................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ATTTTTCCTTAATCTTGTAG........................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..........................................................................................................................................................................................................ATGTTGATGATTCCATAGCTCTTCAA...................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ....................................................................................................................................................TCATTTGGTTGGTTGTTAATAAATACATTTTTCCTTAATCTTGCTAATCTAG.................................................. | 52 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................................................................................................................................................................TTCCTTAATCTTGCTAATCTATAA................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................CATTTGGTTGGTTGTAATA.................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GACACCAACTCCTGCAGAGACAGATAGAGACTAGCAAACTGTGTCTGCTTTCAGTAATGCTGATGTATAAAGTAAGGAGACTCCATTTAAGTCATAAACCTATGGATTTTCGTGACAATAGAAAACATTTTTCCATCTTAGTATAATATCATTTGGTTGGTTGTTAATAAATACATTTTTCCTTAATCTTGCTAATCTAGATATGTTGATGATTCCATAGCTCTTCAAATAGCACTTGGAAATAAAGATA ...........................................................................(((((.(((((...............)))))(((((.........)))))....)))))....................(((((((.(((((..((.......))..)))))...)))))))..................................................... ..........................................................................75...........................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR037931(GSM510469) 293GFP. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207116(GSM721078) Nuclear RNA. (cell line) | GSM416733(GSM416733) HEK293. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189784 | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR040042(GSM532927) G428N. (cervix) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | SRR033718(GSM497063) Multiple Myeloma (U266). (B cell) | SRR029124(GSM416753) HeLa. (hela) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR191557(GSM715667) 57genomic small RNA (size selected RNA from t. (breast) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR189785 | SRR037934(GSM510472) 293cand4_rep3. (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM359177(GSM359177) hela_nucl_a. (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................TAGATATGTTGATGAAAA................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................ATCATTTGGTTGGTTGTTG.................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |