ID: uc001hzc.2_intron_1_0_chr1_241761300_r.5p
GENE: (1)
chr1:241802984-241803233-


(4)
AGO2.ip
(3)
BRAIN
(10)
BREAST
(19)
CELL-LINE
(15)
CERVIX
(4)
HEART
(2)
HELA
(4)
LIVER
(1)
OTHER
(10)
SKIN
(1)
TESTES

Sense strand
GTGGGACACCGTGGGCTGCGTGTGGGACGGGTTTAGCGGCAGCCTCTTCGGTGAGTTGGACTGGGAGAAGGCAGCCTCCCCTCTGCAAACTTCCACTCCCCACCCCGCTGCCCGCTCCGTGCGTCCGCCCCCCAGCCCGCCCCGCACCGCTTCCCGCTCGGCCCCGCGCCCCCCGCCCTACACCGCCCCGCTCCCCGCTCGCCTCCTCAACGCTGCCCGACCCCAGCCGCATGGCGGGTGCCTTCCTCTT
..........................................................................................................((.....((...(((((...((..........))..))))).)).....((..(((...(((.....)))........)))..)).....))....................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532889(GSM532889)
G576N. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
GSM532887(GSM532887)
G761N. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM532884(GSM532884)
G871T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040031(GSM532916)
G013T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040042(GSM532927)
G428N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040037(GSM532922)
G243T. (cervix)
SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)
SRR040011(GSM532896)
G529T. (cervix)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM532890(GSM532890)
G576T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR040012(GSM532897)
G648N. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................................CGCCCCGCTCCCCGCACC.................................................1809.005.00--1.001.002.00----1.00----2.00------1.00-------------------------------------1.00-----------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCAC..................................................1707.005.00--2.00-1.00----------------------1.00--1.00--------1.00-----1.00-------------------------
..................CGTGTGGGACGGGTTTAG......................................................................................................................................................................................................................1816.006.006.00----------------------------------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGC....................................................1505.005.00---------------------------------1.00--------1.00-1.00-1.00---1.00--------------------
........................................................................................................................................................................................GCCCCGCTCCCCGCTTCC................................................183.000.00-----------------1.00------------------------------1.00-------------1.00--------
..........................ACGGGTTTAGCGGCAGCCTCTTCG........................................................................................................................................................................................................2412.002.00-------------2.00---------------------------------------------------------
.......................................................................................................CCCGCTGCCCGCTCCGTG.................................................................................................................................1812.002.002.00----------------------------------------------------------------------
......................TGGGACGGGTTTAGCGGCA.................................................................................................................................................................................................................1912.002.00-------2.00---------------------------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCACCC................................................1902.005.00---1.00-----1.00-------------------------------------------------------------
.................................................GGTGAGTTGGACTGGGAGAAGG...................................................................................................................................................................................2212.002.00-----2.00-----------------------------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCA...................................................1602.005.00--------------------1.00--1.00-----------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCTC..................................................1721.501.50---------0.50-------0.50---------------------------------------------0.50-------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCT...................................................1631.331.33-------------------0.330.33-------------------------------------------0.330.33-----
......................TGGGACGGGTTTAGCGGCAGCCTCC...........................................................................................................................................................................................................251.000.00---------------1.00-------------------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCATC.................................................1801.005.00---1.00-------------------------------------------------------------------
..................CGTGTGGGACGGGTTTAGCGGCAG................................................................................................................................................................................................................2411.001.00---------------------------------------------------------1.00-------------
.........CGTGGGCTGCGTGTGGGACGGGTTTAGCGGC..................................................................................................................................................................................................................3111.001.00----------1.00------------------------------------------------------------
.............................................................................................CACTCCCCACCCCGCGCCC..........................................................................................................................................191.000.00-1.00---------------------------------------------------------------------
.................GCGTGTGGGACGGGTTTAGCGGCA.................................................................................................................................................................................................................2411.001.00-----------------------------------------------------1.00-----------------
........CCGTGGGCTGCGTGTAGGG...............................................................................................................................................................................................................................191.000.00-------------------------------------1.00---------------------------------
.........................................................................................................................................................................CCCCCGCCCTACACCACC...............................................................181.000.00---1.00-------------------------------------------------------------------
............................................................................................................................CCGCCCCCCAGCCCGTCG............................................................................................................181.000.00-1.00---------------------------------------------------------------------
.......................................................TTGGACTGGGAGAAGGCAGCCTCCCCTCTGCA...................................................................................................................................................................3211.001.00---------------1.00-------------------------------------------------------
........................................................................................................................................................................CCCCCCGCCCTACACCCCC...............................................................191.000.00-1.00---------------------------------------------------------------------
...............CTGCGTGTGGGACGGGTTTAGCGGCAGCCT.............................................................................................................................................................................................................3011.001.00-----------1.00-----------------------------------------------------------
..........................ACGGGTTTAGCGGCAGCCCC............................................................................................................................................................................................................201.000.00---------------------------------------------------1.00-------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCTTAC................................................1931.001.33--------------------------1.00--------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCAA..................................................1701.005.00--1.00--------------------------------------------------------------------
.........CGTGGGCTGCGTGTGGGACGGGT..........................................................................................................................................................................................................................2311.001.00------------------1.00----------------------------------------------------
.........................................GCCTCTTCGGTGAGTTGGACTGGG.........................................................................................................................................................................................2411.001.00------------------------1.00----------------------------------------------
.................................................................................................................................................................CCCCGCGCCCCCCGCCCTACCCCC.................................................................241.000.00-------------------------------------------1.00---------------------------
..........................................CCTCTTCGGTGAGTTGGACTGGGAGAAGGCAG................................................................................................................................................................................3211.001.00-------1.00---------------------------------------------------------------
..................................................GTGAGTTGGACTGGGAGAAGGCAGC...............................................................................................................................................................................2511.001.00-----------------------------------------------1.00-----------------------
.............................................................................................CACTCCCCACCCCGCGCC...........................................................................................................................................181.000.00-------------------------------1.00---------------------------------------
....................TGTGGGACGGGTTTATAAG...................................................................................................................................................................................................................191.000.00-----------------------------------1.00-----------------------------------
................TGCGTGTGGGACGGGTTTAGCGGCAGC...............................................................................................................................................................................................................2711.001.00-----------1.00-----------------------------------------------------------
......CACCGTGGGCTGCGTGTGGG................................................................................................................................................................................................................................2011.001.00------1.00----------------------------------------------------------------
.............................................................TGGGAGAAGGCAGCCTCC...........................................................................................................................................................................1811.001.00--------------------------------------1.00--------------------------------
.........................................................................................................................................................................CCCCCGCCCTACACCACAG..............................................................191.000.00----------------------1.00------------------------------------------------
.....................................................AGTTGGACTGGGAGAAGGCAGCCTCCCC.........................................................................................................................................................................2811.001.00------------------------------------1.00----------------------------------
.......ACCGTGGGCTGCGTGTGGGACGGGC..........................................................................................................................................................................................................................251.000.00----------------------------------------1.00------------------------------
.............................................................................................CACTCCCCACCCCGCGCCT..........................................................................................................................................191.000.00----------------------------------------------------1.00------------------
..............................................................................................ACTCCCCACCCCGCTCGC..........................................................................................................................................181.000.00-------------------------------------------------------1.00---------------
.......ACCGTGGGCTGCGTGTGGGAC..............................................................................................................................................................................................................................2111.001.00-----1.00-----------------------------------------------------------------
.............................................................................................CACTCCCCACCCCGCGC............................................................................................................................................171.000.00----------------1.00------------------------------------------------------
........................................................................................................................................................................................GCCCCGCTCCCCGCTGCG................................................181.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................CCCCCCGCCCTACACCCC................................................................181.000.00-1.00---------------------------------------------------------------------
.......................................................................................................................................................................................CGCCCCGCTCCCCGCACA.................................................1801.005.00----1.00------------------------------------------------------------------
.......ACCGTGGGCTGCGTG....................................................................................................................................................................................................................................1560.170.17-----------0.17-----------------------------------------------------------
.........CGTGGGCTGCGTGTG..................................................................................................................................................................................................................................1570.140.14-----------0.14-----------------------------------------------------------

Antisense strand
GTGGGACACCGTGGGCTGCGTGTGGGACGGGTTTAGCGGCAGCCTCTTCGGTGAGTTGGACTGGGAGAAGGCAGCCTCCCCTCTGCAAACTTCCACTCCCCACCCCGCTGCCCGCTCCGTGCGTCCGCCCCCCAGCCCGCCCCGCACCGCTTCCCGCTCGGCCCCGCGCCCCCCGCCCTACACCGCCCCGCTCCCCGCTCGCCTCCTCAACGCTGCCCGACCCCAGCCGCATGGCGGGTGCCTTCCTCTT
..........................................................................................................((.....((...(((((...((..........))..))))).)).....((..(((...(((.....)))........)))..)).....))....................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532889(GSM532889)
G576N. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
GSM532887(GSM532887)
G761N. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM532884(GSM532884)
G871T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040031(GSM532916)
G013T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040042(GSM532927)
G428N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040037(GSM532922)
G243T. (cervix)
SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)
SRR040011(GSM532896)
G529T. (cervix)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM532890(GSM532890)
G576T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR040012(GSM532897)
G648N. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
....................................TCACCGAAGAGGCTGCCG.................................................................................................................................................................................................... 1812.002.00------------2.00----------------------------------------------------------
...........................................................AGGCTGCCTTCTCCCAGT............................................................................................................................................................................. 1812.002.00--------2.00--------------------------------------------------------------
.........................GAGGCTGCCGCTAAACCCGTC............................................................................................................................................................................................................ 2112.002.00------2.00----------------------------------------------------------------
........................................................................................................................................CCGCCCCGCACCGCTCTGC............................................................................................... 191.000.00--------1.00--------------------------------------------------------------
....................................................................................................................................................................................CACCGCCCCGCTCCCCGCGG.................................................. 201.000.00-------------------------1.00---------------------------------------------
.........................................................................................................................CGTCCGCCCCCCAGCCCGGCGC........................................................................................................... 221.000.00-1.00---------------------------------------------------------------------
..........................................CCCAGTCCAACTCACCGAAGAGG......................................................................................................................................................................................... 2311.001.00----------------------------------------------------------1.00------------
....................................................................................................................................CAGCCCGCCCCGCACCT..................................................................................................... 171.000.00--------------------------------------------------------1.00--------------
..............................................................................................................................................................CGGCCCCGCGCCCCCCCTC......................................................................... 191.000.00-----------------------------1.00-----------------------------------------
..................................................................................................................................................................CCCGCGCCCCCCGCCCTGGG.................................................................... 201.000.00----------1.00------------------------------------------------------------
......................TGGGACGGGTTTAGCGA................................................................................................................................................................................................................... 171.000.00--------------------------------1.00--------------------------------------
...................................................................................................................................CCAGCCCGCCCCGCAACA..................................................................................................... 181.000.00-----------------------------------------1.00-----------------------------
.........................................GTCCAACTCACCGAAGAGGC............................................................................................................................................................................................. 2011.001.00-------------------------------------------------------------1.00---------
.........................................................................AGTTTGCAGAGGGGAGGC............................................................................................................................................................... 1811.001.00------------------------------------------------------------1.00----------
...........................................................................CTCCCCTCTGCAAACCACA............................................................................................................................................................ 191.000.00-------------------1.00---------------------------------------------------
........................................................................................................................................................................CCCCCCGCCCTACACGC................................................................. 171.000.00------------------------------------------------------1.00----------------
.............................................................................................................................................................................................GCTCCCCGCTCGCCTCGCG.......................................... 191.000.00-------------------------------------------------1.00---------------------
...................................................................................................................................................................CCGCGCCCCCCGCCCTACCT................................................................... 201.000.00----------------------------1.00------------------------------------------
........................................................................................................................................................CCCGCTCGGCCCCGCGCCCCTT............................................................................ 221.000.00----------------------------------1.00------------------------------------
...........................................................................................................................CGGGCTGGGGGGCGGA............................................................................................................... 1630.330.33----------------0.33------------------------------------------------------
...........................................................................................................................TCCGCCCCCCAGCCCGGCTG........................................................................................................... 200.330.00--------------------------------------------------------------------0.33--
................................................................................................CGGGCAGCGGGGTGGGGA........................................................................................................................................ 1830.330.33----------------0.33------------------------------------------------------
..............................................................................................................................GGGGCGGGCTGGGGGGC........................................................................................................... 1730.330.33-0.33---------------------------------------------------------------------
...........................................................................................................................TCCGCCCCCCAGCCCGGCGG........................................................................................................... 200.330.00---------------------------------------------------------------------0.33-
...........................................................................................................................TCCGCCCCCCAGCCCGGGG............................................................................................................ 190.330.00----------0.33------------------------------------------------------------
...........................................................................................................................TCCGCCCCCCAGCCCGGCGC........................................................................................................... 200.330.00----------------0.33------------------------------------------------------
...........................................................................................................................TCCGCCCCCCAGCCCGGCG............................................................................................................ 190.330.00-0.33---------------------------------------------------------------------
...........................................................................................................................TCCGCCCCCCAGCCCGGTGG........................................................................................................... 200.330.00------------------------------------------------------------------0.33----
...........................................................................................................................TCCGCCCCCCAGCCCGGGGG........................................................................................................... 200.330.00------------------0.33----------------------------------------------------
...........................................................................................................................TCCGCCCCCCAGCCCGGCAG........................................................................................................... 200.330.00-------------------------------------------------------------------0.33---
..............................................................GAGGCTGCCTTCTCCC............................................................................................................................................................................ 1680.120.12----------------------------------------------------------------------0.12