ID: uc001hwz.1_intron_12_0_chr1_235602238_f.3p
GENE: TBCE(13)
chr1:235604929-235605178+


(1)
B-CELL 		(8)
CELL-LINE 		(3)
HEART 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGGTAGATAGAAGATTCTGCCCTTGGAAGTGGTCGTTGTCCATCACTCCTAAAAATCACACTGAATAAAGGCAGCTCCATGTGTCCTGGGAAAGGCACAGGCTCTCTGGACGCTTACCTATCCTTTGTTTGTTTGTTTGTTTTGTTTTTACTTATAGTGGCCTTTGGTTTATCATTCATCTCTTTTGCTTTCTTAAACAGAATATGGTGCACCTGAAGATTGGGAACTCAAAACACAGCAACCACTTATG
..............................................................(((((((((.........((((((.((((...((....)))))).))))))........)))))))))........................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTCCG....................................................................................................275.000.002.003.00---------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTCTGC...................................................................................................284.000.001.003.00---------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTCTGG....................................................................................................273.000.003.00----------------------
........................................................................................................................................................................................................................AGATTGGGAACTCAAAACACA.............2113.003.00---3.00-------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTCTGC..................................................................................................293.000.003.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTTTTCCC..................................................................................................273.000.003.00----------------------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTTTCCC.......................................................................................................273.000.003.00----------------------
............................................................................................................................TTGTTTGTTTGTTTGTTTTGTTTTACCC..................................................................................................283.000.002.001.00---------------------
........................................................................................................................................................................................................................AGATTGGGAACTCAAAACACAGCAACCAC.....2912.002.00---------2.00-------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTACCC..................................................................................................292.000.002.00----------------------
..........................................................................................................................................................................................................TATGGTGCACCTGAAGATTG............................2012.002.00-----2.00-----------------
.............................................................................................................ACGCTTACCTATCCTTTGT..........................................................................................................................1912.002.00--2.00--------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTCTG....................................................................................................272.000.001.001.00---------------------
..................................................................................................AGGCTCTCTGGACGCTTACCTATA................................................................................................................................242.000.00----2.00------------------
...................................................................................................................ACCTATCCTTTGTTTGTTTGTT.................................................................................................................2212.002.00-2.00---------------------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTTGGG........................................................................................................262.000.002.00----------------------
.....................................................................................................................................................................................................................TGAAGATTGGGAACTCAAAACACAGC...........2612.002.00-----1.00-----1.00-----------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTTAGTG.......................................................................................................271.000.001.00----------------------
................................................................................................................CTTACCTATCCTTTGTTTGT......................................................................................................................2011.001.00--1.00--------------------
................................................................................................................................TTGTTTGTTTGTTTTGTTTCTTC...................................................................................................231.000.001.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTCCC.....................................................................................................241.000.001.00----------------------
...........................................................ACTGAATAAAGGCAGGC..............................................................................................................................................................................171.000.00-------------1.00---------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTACC...................................................................................................281.000.001.00----------------------
...............................................................................................................................TTTGTTTGTTTGTTTTGTTTTTAATTC................................................................................................271.000.00-1.00---------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTCTA.....................................................................................................261.000.001.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTTTACCC..................................................................................................271.000.00-1.00---------------------
..............................................................................................................................GTTTGTTTGTTTGTTTTGTTTTTCGAG.................................................................................................271.000.001.00----------------------
............................................................................................................................TTGTTTGTTTGTTTGTTTTGTTTTCCGG..................................................................................................281.000.001.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTTCTG....................................................................................................251.000.001.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTCCG.....................................................................................................241.000.00-1.00---------------------
................................................................................................................................TTGTTTGTTTGTTTTGTTTCTGG...................................................................................................231.000.001.00----------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTCAAG..................................................................................................291.000.001.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTTCCTG...................................................................................................261.000.001.00----------------------
...............................................................................................................................................................................................................TGCACCTGAAGATTGGGAACTCAAAACACAGCA..........3311.001.00-------1.00---------------
......................TTGGAAGTGGTCGTTTCA..................................................................................................................................................................................................................181.000.00----1.00------------------
...........................................................................................................................................................AGTGGCCTTTGGTTTTT..............................................................................171.000.001.00----------------------
.....................................................................................................................................................................................................................TGAAGATTGGGAACTCAAAACACA.............2411.001.00--------1.00--------------
.................................................................................................................................................................................................................CACCTGAAGATTGGGAACTCAAAACACAGC...........3011.001.00------1.00----------------
..........................................................................................................................CTTTGTTTGTTTGTTTGTTTTGTATTT.....................................................................................................271.000.001.00----------------------
...................CCCTTGGAAGTGGTCGTTGT...................................................................................................................................................................................................................2011.001.00--------------1.00--------
..............................................TCCTAAAAATCACACTGTAAA.......................................................................................................................................................................................211.000.00------------1.00----------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTGGT.........................................................................................................251.000.00-1.00---------------------
.......................................................................................................................ATCCTTTGTTTGTTTGTTTGTTTTGTTTGC.....................................................................................................301.000.00-1.00---------------------
............................................................................................................................TTGTTTGTTTGTTTGTTTTGTTTCGAT...................................................................................................271.000.00-1.00---------------------
.............................................................................................................................................................................................................................GGGAACTCAAAACACAGC...........1811.001.00---------------1.00-------
.....................................................................................................................................................................................................................TGAAGATTGGGAACTCTG...................181.000.00----------1.00------------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTTGTTTTGAG...................................................................................................311.000.00--1.00--------------------
.................................................................................................................................TGTTTGTTTGTTTTGTTTATAC...................................................................................................221.000.00-1.00---------------------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTTTGG........................................................................................................261.000.001.00----------------------
........................................................................................................................................................................................................................AGATTGGGAACTCAAAACACAGCAAC........2611.001.00----1.00------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTACCG..................................................................................................291.000.00--1.00--------------------
..................................................................................................................................................................................................................ACCTGAAGATTGGGAACTCAAAACACAGC...........2911.001.00---------------------1.00-
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTTTACCG..................................................................................................271.000.00-1.00---------------------
............................................................................................................................................................................................................................TGGGAACTCAAAACACAGCAACC.......2311.001.00--------------------1.00--
...................................................................................................................................................................................................................CCTGAAGATTGGGAACTCTG...................201.000.00-----------------1.00-----
......................................................................................................................................................................................................................GAAGATTGGGAACTCAAAACACAGCAA.........2711.001.00---1.00-------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTTAAGC.................................................................................................301.000.00-1.00---------------------
.........................................................................................................................................................................................................ATATGGTGCACCTGAAGATTGGGA.........................2411.001.00----1.00------------------
...................................................................................................................ACCTATCCTTTGTTTGT......................................................................................................................1711.001.001.00----------------------
..................................................................................................................................................................................................................ACCTGAAGATTGGGAACTC.....................1911.001.00------1.00----------------
.........................................................................................................................................................................................................ATATGGTGCACCTGAAGATTGGGAACTCAAAAC................3311.001.00-------1.00---------------
.........................................................................................................................CCTTTGTTTGTTTGTTTGTTTTGTCT.......................................................................................................261.000.00-1.00---------------------
...............................................................................................................................TTTGTTTGTTTGTTTTGTTTCGG....................................................................................................231.000.001.00----------------------
..........................................................................................................................CTTTGTTTGTTTGTTTGTTTTACTG.......................................................................................................251.000.001.00----------------------
......................................................................................................................................................................................................................GAAGATTGGGAACTCAAAACACAGCA..........2611.001.00--------1.00--------------
........................................................................................................................TCCTTTGTTTGTTTGTTTGTTTTTTC........................................................................................................261.000.001.00----------------------
...............................................................................................................................TTTGTTTGTTTGTTTTGTTAATG....................................................................................................231.000.00-1.00---------------------
...................................................................................................................................TTTGTTTGTTTTGTTTTTACTCTT...............................................................................................241.000.001.00----------------------
.............................................................................................................................TGTTTGTTTGTTTGTTTTGTTTCGTC...................................................................................................261.000.00-1.00---------------------
...........................................................................................................................TTTGTTTGTTTGTTTGTTTTGTTCGAG....................................................................................................271.000.00-1.00---------------------
..........................................................................................................................CTTTGTTTGTTTGTTTGTTTTGTTTTTAC...................................................................................................2911.001.00-1.00---------------------
.......................................................................................................................ATCCTTTGTTTGTTTGTTCTAG.............................................................................................................221.000.00-1.00---------------------
.....................................................................................................................................................................................................................TGAAGATTGGGAACTCA....................1720.500.50----------------------0.50
.......................................................................................................................ATCCTTTGTTTGTTTGTTTGTTTT...........................................................................................................2440.250.250.25----------------------
................................................................................................................CTTACCTATCCTTTGT..........................................................................................................................1640.250.25--0.25--------------------
......................................................................................................................................................................................................................GAAGATTGGGAACTCA....................1650.200.20----------0.20------------

Antisense strand
GGGTAGATAGAAGATTCTGCCCTTGGAAGTGGTCGTTGTCCATCACTCCTAAAAATCACACTGAATAAAGGCAGCTCCATGTGTCCTGGGAAAGGCACAGGCTCTCTGGACGCTTACCTATCCTTTGTTTGTTTGTTTGTTTTGTTTTTACTTATAGTGGCCTTTGGTTTATCATTCATCTCTTTTGCTTTCTTAAACAGAATATGGTGCACCTGAAGATTGGGAACTCAAAACACAGCAACCACTTATG
..............................................................(((((((((.........((((((.((((...((....)))))).))))))........)))))))))........................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
......................................................................TTTCCCAGGACACATGGAGCTGC............................................................................................................................................................. 2311.001.00---1.00-------------------
.................................................................................................................................................................................ATCTCTTTTGCTTTCTTAAAC.................................................... 211.000.00-------------------1.00---
..............TTCTGCCCTTGGAAGTGCTC........................................................................................................................................................................................................................ 201.000.00-1.00---------------------
...................................................................................................GGCTCTCTGGACGCTAAA..................................................................................................................................... 181.000.00------------------1.00----
....................CCTTGGAAGTGGTCGAAGG................................................................................................................................................................................................................... 191.000.00----------------1.00------