ID: uc001hwp.2_intron_10_0_chr1_235324773_r.5p
GENE: (6)
chr1:235331659-235331908-


(4)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(9)
OTHER 		(2)
RRP40.ip 		(5)
SKIN 		(1)
XRN.ip

Sense strand
ATGTTAACTTTAGCTGAACCGTCAATGTCCAGCGCATCACAAAATGGAATGTCAGTTGAGTGCAGGTGACAGCAGGACTTGCTAAAGCACTTTGCACTTAATGGCTGTTGAGGGCCACTTTTTTTTTATACTGCACAGTGGCACAAAAAAATATCAGACAAGCACTATTTTATATTTAAAAATTGTTTCTTGACAAGCTGACTTGGCACTTAAGTGCACTTTTTTATGAAGAAAAAGTACAATGAACTGC
.................................................................................................................((((((.................)))))).................(((((...(((((....)))))..)))))..............................................................
.............................................................................................................110............................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189786SRR189784SRR343334SRR189787SRR189783SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
..................................................................................................................................................................CACTATTTTATATTTAAAAATTG.................................................................23113.0013.0013.00--------------------------------------
.............................................................................................................................................................................................................GCACTTAAGTGCACTTTTTTATG......................2315.005.005.00--------------------------------------
..................................................................................................................CCACTTTTTTTTTATACTGCACAG................................................................................................................2415.005.00-----3.002.00--------------------------------
.........................................................................................................................................GTGGCACAAAAAAATATCAG.............................................................................................2014.004.00---3.00--1.00--------------------------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTTTTATG......................2213.003.00---1.00--1.00------------------------------1.00-
....................................................................ACAGCAGGACTTGCTAAAGCACTTAATG..........................................................................................................................................................283.000.003.00--------------------------------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTAT..........................182.000.00--2.00------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTTTT....................................192.000.00-2.00-------------------------------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTTTTAT.......................2112.002.001.00-1.00------------------------------------
................................................................................................................................................................................................ACAAGCTGACTTGGCACTTAAGTGCACTTTTC..........................322.000.00-1.00--1.00----------------------------------
..........................................................................................TTTGCACTTAATGGCTGTTGAGGG........................................................................................................................................2412.002.00---------------2.00-----------------------
.....................................................AGTTGAGTGCAGGTGACAGCAGGACTCGC........................................................................................................................................................................292.000.00----1.00-------------1.00--------------------
..................................................................................................................................................................................................................................TGAAGAAAAAGTACAATGAACT..2212.002.00-------------------------------1.00---1.00---
.................................................................................CTAAAGCACTTTGCACTTA......................................................................................................................................................1912.002.002.00--------------------------------------
................................................................................................................................................................................................................................TATGAAGAAAAAGTACAATGA.....2112.002.00--------------2.00------------------------
.....................................................................................................................................................................................................CTGACTTGGCACTTAAGTGCACTTTTATG........................292.000.00-----2.00---------------------------------
...............................................................AGGTGACAGCAGGACTTGCTAAA....................................................................................................................................................................2312.002.00-------------2.00-------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTCTTT....................................192.000.00-2.00-------------------------------------
...............................................................................................................................................................................................................ACTTAAGTGCACTTTTTTATG......................2112.002.00--2.00------------------------------------
........................................................................CAGGACTTGCTAAAGCACTTTGCACTTAACGG..................................................................................................................................................322.000.00-2.00-------------------------------------
...........................................................................................................................TTTTATACTGCACAGTGGCACA.........................................................................................................2212.002.00-2.00-------------------------------------
.................................................................................................................................................................................................................................ATGAAGAAAAAGTACAATGAAC...2212.002.00----------2.00----------------------------
........................................................TGAGTGCAGGTGACAGCAGGACTTG.........................................................................................................................................................................2512.002.00------------2.00--------------------------
....................................................................................AAGCACTTTGCACTTAATGGCCG...............................................................................................................................................231.000.00----1.00----------------------------------
...............................................................................................................................................................................................................................TTATGAAGAAAAAGTACAATGAACTG.2611.001.00---------------------------1.00-----------
...................................................................................................................................................................................................AGCTGACTTGGCACTTTCTT...................................201.000.00-1.00-------------------------------------
...........................................................................GACTTGCTAAAGCACTTTGCACCT.......................................................................................................................................................241.000.00-1.00-------------------------------------
..............................................................................................................................................ACAAAAAAATATCAGACAAGCACT....................................................................................2411.001.001.00--------------------------------------
.....................................................................................................................................................................................................CTGACTTGGCACTTAAGTGCAA...............................221.000.00---------------------------------1.00-----
..............................................................................................................................................................................................TGACAAGCTGACTTGGCACTTTTT....................................241.000.00-1.00-------------------------------------
........................................................................CAGGACTTGCTAAAGCACTTTGCACTC.......................................................................................................................................................271.000.00-1.00-------------------------------------
.....................................................................................................................................................AATATCAGACAAGCACTATTTTATA............................................................................2511.001.00------------------------1.00--------------
............................................................................ACTTGCTAAAGCACTTTGCACTTAAC....................................................................................................................................................261.000.00-1.00-------------------------------------
................................................................................................................................................................................................ACAAGCTGACTTGGCACTTTTTC...................................231.000.00-1.00-------------------------------------
..............................................................................................................................................................................................................................TTTATGAAGAAAAAGTACAATGAACT..2611.001.00------------------------------------1.00--
...........................................ATGGAATGTCAGTTGAGTGCAGGTGACAGC.................................................................................................................................................................................3011.001.00----------------------------------1.00----
......................................................................................................................................................................................................TGACTTGGCACTTAAGTGCACTTTTT..........................2611.001.00-1.00-------------------------------------
.....................................................................................................................CTTTTTTTTTATACTGTATG.................................................................................................................201.000.00-------1.00-------------------------------
................................................................................................................................................................................................................................TATGAAGAAAAAGTACAATGAACT..2411.001.00-----------------------1.00---------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTTTAT........................201.000.001.00--------------------------------------
.............................................................................................................................................................................................................GCACTTAAGTGCACTTTTTTTTG......................231.000.001.00--------------------------------------
..................................................................................................................................................................CACTATTTTATATTTAAAAACCG.................................................................231.000.00----------------1.00----------------------
...........................................ATGGAATGTCAGTTGAGTG............................................................................................................................................................................................1911.001.00--------1.00------------------------------
.......................................................................................................................TTTTTTTTATACTGCACAG................................................................................................................1911.001.001.00--------------------------------------
..........................................................AGTGCAGGTGACAGCAGGACTTGCCAA.....................................................................................................................................................................271.000.00---------1.00-----------------------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTTTCAT.......................211.000.00--1.00------------------------------------
.........................................AAATGGAATGTCAGTTGAGTGCAGG........................................................................................................................................................................................2511.001.00-----------1.00---------------------------
...........................................................GTGCAGGTGACAGCAGGACTTG.........................................................................................................................................................................2211.001.00--------------------------------1.00------
................................................................................................................................................................................................................................TATGAAGAAAAAGTACAATGAA....2211.001.00----------------------------1.00----------
..............................................................................................................................................................................................................................TTTATGAAGAAAAAGTACAATGAA....2411.001.00-----------1.00---------------------------
................AACCGTCAATGTCCAGCGC.......................................................................................................................................................................................................................1911.001.00--------------------1.00------------------
.............................................................................................GCACTTAATGGCTGTTGAG..........................................................................................................................................1911.001.00-----------------------------1.00---------
..................................................................................................................CCACTTTTTTTTTATACTGCACAGTGGCACAA........................................................................................................3211.001.001.00--------------------------------------
...............................................AATGTCAGTTGAGTGCAGGTGACAGCAGG..............................................................................................................................................................................2911.001.00------------------1.00--------------------
...................................................................................................................CACTTTTTTTTTATACTGCACAGTGGCACA.........................................................................................................3011.001.001.00--------------------------------------
...................................................................................................................................................................ACTATTTTATATTTAAAAATTG.................................................................2211.001.001.00--------------------------------------
..........................................................AGTGCAGGTGACAGCAGGACTCGC........................................................................................................................................................................241.000.00-1.00-------------------------------------
................................................................................................................................................................................................ACAAGCTGACTTGGCACTCTTT....................................221.000.00-1.00-------------------------------------
..................................................................................................................................................................................................AAGCTGACTTGGCACTTTCT....................................201.000.00----1.00----------------------------------
.......................................................TTGAGTGCAGGTGACAGCAGGACTT..........................................................................................................................................................................2511.001.00-----------------1.00---------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTA......................................1711.001.00------------------------------1.00--------
..........................................................AGTGCAGGTGACAGCAGGACTTGCT.......................................................................................................................................................................2511.001.00---------1.00-----------------------------
..................................................................................TAAAGCACTTTGCACTTAAT....................................................................................................................................................2011.001.00---1.00-----------------------------------
............................................................................................................TGAGGGCCACTTTTTTTTTATACTGCACAG................................................................................................................3011.001.001.00--------------------------------------
......................................................................................................................TTTTTTTTTATACTGTAAT.................................................................................................................191.000.001.00--------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTAAGTGCACTTTTT..........................2911.001.00-1.00-------------------------------------
................................................................GGTGACAGCAGGACTTGCTAAAGCA.................................................................................................................................................................2511.001.00-------------------1.00-------------------
.........................................................................................................................TTTTTTATACTGCACTTTG..............................................................................................................191.000.00----------------1.00----------------------
.................................................................................................................................................................................................................TTAAGTGCACTTTTTTATG......................1911.001.001.00--------------------------------------
.....................................................................................................................................................................................................................................AGAAAAAGTACAATGAACTG.2011.001.00--------1.00------------------------------
...................................................................................AAAGCACTTTGCACTTAACGG..................................................................................................................................................211.000.00----1.00----------------------------------
.......................................................................................................................TTTTTTTTATACTGCAATT................................................................................................................191.000.00-------1.00-------------------------------
.....................................................................................................................................................................................................CTGACTTGGCACTTAAGTGCACTTTTTTATG......................3111.001.00--1.00------------------------------------
............................................................................................TGCACTTAATGGCTGTTGAG..........................................................................................................................................2011.001.00---------------------1.00-----------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTAAGTGCACTTTTTC.........................3011.001.00-1.00-------------------------------------
......................................................................................................................TTTTTTTTTATACTGCAATT................................................................................................................201.000.00-------1.00-------------------------------
................................................ATGTCAGTTGAGTGCAGGTGACAGCAGG..............................................................................................................................................................................2811.001.00---------1.00-----------------------------
.................................................................................................TTAATGGCTGTTGAGGGCCACT...................................................................................................................................2211.001.00-1.00-------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTAAA....................................191.000.00--------------------------------------1.00
...................................................................................................................................................................................................................AAGTGCACTTTTTTATG......................1711.001.00---1.00-----------------------------------
.....................................................................................................................................................................................................CTGACTTGGCACTTAAGTGCACTTTTTTAT.......................3011.001.001.00--------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTAAGTGCACTTTTCT.........................301.000.00-1.00-------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTTTC....................................191.000.00-1.00-------------------------------------
...........................................................................................................................................................................................TCTTGACAAGCTGACTTGG............................................1911.001.00----------1.00----------------------------
.................................................................................................................................................................................................................TTAAGTGCACTTTTTTATT......................191.000.001.00--------------------------------------
....TAACTTTAGCTGAACCGTC...................................................................................................................................................................................................................................1911.001.00--------1.00------------------------------
........................................................................CAGGACTTGCTAAAGCACTTTGCACC........................................................................................................................................................261.000.00-1.00-------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTTTTC...................................201.000.00-1.00-------------------------------------
........................................................................................................................................................................................................ACTTGGCACTTAAGTGCACTTTTTT.........................2511.001.00-1.00-------------------------------------
...................................................................................................................................................AAAATATCAGACAAGCAC.....................................................................................1811.001.00-----------1.00---------------------------
.....................................................................................................................CTTTTTTTTTATACTGCACAG................................................................................................................2111.001.001.00--------------------------------------
.....................................................................................................................................................................................................CTGACTTGGCACTTAAGTGCACTTTTCT.........................281.000.00-1.00-------------------------------------
........................................................TGAGTGCAGGTGACAGCAGGACTT..........................................................................................................................................................................2411.001.00-----------------1.00---------------------
................................................................................................................................................................................................ACAAGCTGACTTGGCACTTAAGTGCACTTTTT..........................3211.001.00-1.00-------------------------------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTTTTAC.......................211.000.00--1.00------------------------------------
..............................................................................................................................................................................................................CACTTAAGTGCACTTTTTTCCG......................221.000.00--1.00------------------------------------
...................................................................................................................CACTTTTTTTTTATACTGCACAG................................................................................................................2311.001.00------1.00--------------------------------
.............................................................................................................................................................................................TTGACAAGCTGACTTGGCACTTT......................................231.000.00-1.00-------------------------------------
...................................................................................................................................................................................................AGCTGACTTGGCACTTAAGTGCACTTTCCT.........................301.000.00-1.00-------------------------------------
........................................................................................................................................AGTGGCACAAAAAAATATCAG.............................................................................................2111.001.001.00--------------------------------------
........................................................................CAGGACTTGCTAAAGC..................................................................................................................................................................1630.330.33--------------------0.33------------------
.............................................................................................................................................CACAAAAAAATATCAG.............................................................................................1630.330.33---0.33-----------------------------------
........................................................................CAGGACTTGCTAAAG...................................................................................................................................................................1560.170.17---0.17-----------------------------------

Antisense strand
ATGTTAACTTTAGCTGAACCGTCAATGTCCAGCGCATCACAAAATGGAATGTCAGTTGAGTGCAGGTGACAGCAGGACTTGCTAAAGCACTTTGCACTTAATGGCTGTTGAGGGCCACTTTTTTTTTATACTGCACAGTGGCACAAAAAAATATCAGACAAGCACTATTTTATATTTAAAAATTGTTTCTTGACAAGCTGACTTGGCACTTAAGTGCACTTTTTTATGAAGAAAAAGTACAATGAACTGC
.................................................................................................................((((((.................)))))).................(((((...(((((....)))))..)))))..............................................................
.............................................................................................................110............................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189786SRR189784SRR343334SRR189787SRR189783SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
................................................................................................................GGCCACTTTTTTTTTGTAG....................................................................................................................... 191.000.00-------------------1.00-------------------
..............................................................CAGGTGACAGCAGGAAAG.......................................................................................................................................................................... 181.000.00----------------------1.00----------------
............GCTGAACCGTCAATGTGG............................................................................................................................................................................................................................ 181.000.00-------------------------1.00-------------
................................................................................................................................................................................................................CTTAAGTGCACTTTTGAG........................ 181.000.00-------1.00-------------------------------
.................................................................................................TTAATGGCTGTTGAGTTGG...................................................................................................................................... 191.000.00--------------------------1.00------------