ID: uc001hwl.2_intron_2_0_chr1_235283215_r.3p
GENE: (2)
chr1:235283165-235283414-


(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(1)
HELA 		(6)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAACTCAAGTTTTTTCTTTTATTCATTTGAATGTAGATGAACTCTTAATTCCTACAAGTATTCAGGAGTAAAGTTCTTCTATCAGATTTTTTTAGAATGAGTGATTTGGTTTTTTGTTGTTTTATTTTTATTGATATCTGTGTATTGGTTATATCCCCTGGCATAATTGTGGTGTCATTTATTAAATATTTTATTTCCAGTTACCTGACCTTAAAGATGCTGAAGCTGTTCAGAAGTTCTTCCTTGAAGA
..........................................................................................................(((........(((((.........((((((((((((...((........))..))))).....)))))))......)))))........)))...................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................................ATTTATTAAATATTTTATTTCCAGAA................................................2620.000.00-19.00------------1.00-------------------------------------
.................................................................................................................................................................................TTTATTAAATATTTTATTTCCAGA.................................................2419.003.00---9.00------------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTACT............................................................................................................................273.000.003.00---------------------------------------------------
.................................................................................................................................................................................TTTATTAAATATTTTATTTCCAG..................................................2313.003.00----3.00-----------------------------------------------
.....................................................................................................TGATTTGGTTTTTTGTTGTTTTATCTTT.........................................................................................................................282.000.002.00---------------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATTTC..........................................................................................................................292.000.002.00---------------------------------------------------
.....................................................................................................TGATTTGGTTTTTTGTTGTTTTACTT...........................................................................................................................262.000.001.00-1.00-------------------------------------------------
.............................................................................................................TTTTTTGTTGTTTTATTTTTATTGATA..................................................................................................................2712.002.002.00---------------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATCTTT.........................................................................................................................302.000.00--2.00-------------------------------------------------
.........................TTTGAATGTAGATGACTTC..............................................................................................................................................................................................................192.000.00------------1.00---1.00-----------------------------------
.................................................................................................................................................................................TTTATTAAATATTTTATTTCCAGGA................................................2512.003.00----2.00-----------------------------------------------
............................................................................................................................................................................................................................TGAAGCTGTTCAGAATATT...........192.000.00--------2.00-------------------------------------------
...............................................................................................................................................................................................................................AGCTGTTCAGAAGTTCTTCC.......2022.002.00------2.00---------------------------------------------
...........................................................................................................................................................................................................................CTGAAGCTGTTCAGAAGTTCTTCC.......2421.501.50------1.50---------------------------------------------
...............................................................................................AATGAGTGATTTGGTTTTTTGTTGTTCTA..............................................................................................................................291.000.001.00---------------------------------------------------
.......................................................................................................ATTTGGTTTTTTGTTGTTTTACT............................................................................................................................231.000.00--1.00-------------------------------------------------
.......................................................................AGTTCTTCTATCAGATTTTTTCAG...........................................................................................................................................................241.000.00--1.00-------------------------------------------------
..............................................................................................................................................................................................................................AAGCTGTTCAGAAGTTCTT.........1931.001.00---------0.33-----------0.33----------------0.33-------------
.............................................................................................................................................................................................................................GAAGCTGTTCAGAAGTTC...........1841.001.00---------0.75-----------------------------------0.25------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTACTC...........................................................................................................................281.000.001.00---------------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATTTTTACT......................................................................................................................331.000.00--1.00-------------------------------------------------
.................................................................................................................................................................................TTTATTAAATATTTTATTCAG....................................................211.000.00------------------1.00---------------------------------
...........................................................ATTCAGGAGTAAAGTTCTTCTATCAG.....................................................................................................................................................................2611.001.00-----1.00----------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATTTCTA........................................................................................................................311.000.00--1.00-------------------------------------------------
........................................................................................................TTTGGTTTTTTGTTGTGAG...............................................................................................................................191.000.00--1.00-------------------------------------------------
.......................................................................................................ATTTGGTTTTTTGTTGTCC................................................................................................................................191.000.001.00---------------------------------------------------
................................................................................................................................................................................ATTTATTAAATATTTTATTTCCAGA.................................................251.000.00-----------------1.00----------------------------------
............................................................................................................................................................................................TTTTATTTCCAGTTATTTC...........................................191.000.00-----1.00----------------------------------------------
....................................................................TAAAGTTCTTCTATCCCAC...................................................................................................................................................................191.000.00-------------1.00--------------------------------------
................................................................................................ATGAGTGATTTGGTTTTTTGTTGTTTTAC.............................................................................................................................291.000.001.00---------------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTCAT.............................................................................................................................261.000.00--1.00-------------------------------------------------
.......................................................................................................ATTTGGTTTTTTGTTGTTTTATTTTTACT......................................................................................................................291.000.001.00---------------------------------------------------
.................................................................................................TGAGTGATTTGGTTTTTTGTTGTTTTATTTC..........................................................................................................................311.000.00--1.00-------------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATCTT..........................................................................................................................291.000.001.00---------------------------------------------------
.....................................................................................................TGATTTGGTTTTTTGTTGTTTTATTTC..........................................................................................................................271.000.001.00---------------------------------------------------
...............................................................................................AATGAGTGATTTGGTTTTTTGTTGTTCC...............................................................................................................................281.000.001.00---------------------------------------------------
....................................................................................GATTTTTTTAGAATGCATT...................................................................................................................................................191.000.00---------------1.00------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATT............................................................................................................................2711.001.00--1.00-------------------------------------------------
..........................................................TATTCAGGAGTAAAGTTC..............................................................................................................................................................................1811.001.00-----1.00----------------------------------------------
...................................................................................................AGTGATTTGGTTTTTTGTTGTTTTATC............................................................................................................................271.000.00--1.00-------------------------------------------------
............................................................................................................GTTTTTTGTTGTTTTATTGT..........................................................................................................................201.000.00--------------------1.00-------------------------------
........................................................................................................TTTGGTTTTTTGTTGTTTTATTTTCATA......................................................................................................................281.000.00--1.00-------------------------------------------------
.............................................................................................AGAATGAGTGATTTGGGGT..........................................................................................................................................191.000.00-------------------1.00--------------------------------
................................................................................................ATGAGTGATTTGGTTTTTTGTTGTTTTACT............................................................................................................................301.000.001.00---------------------------------------------------
.....................................................................................................................TGTTTTATTTTTATTGATATCTGTG............................................................................................................2511.001.00--1.00-------------------------------------------------
.......................................................................................................ATTTGGTTTTTTGTTGTTTTATCTTT.........................................................................................................................261.000.00--1.00-------------------------------------------------
............................................................................................................................................................................................................................TGAAGCTGTTCAGAAGTTCTTCC.......2321.001.00-------------------------0.50--0.50-----------------------
.....................................................................................................................TGTTTTATTTTTATTGATATCAGTG............................................................................................................251.000.00--1.00-------------------------------------------------
................................................................................................................................................................................ATTTATTAAATATTTTATTTCCATA.................................................251.000.00-----------1.00----------------------------------------
..............................................................................................................TTTTTGTTGTTTTATTTTTTTG......................................................................................................................221.000.00-----1.00----------------------------------------------
........................................................................................................TTTGGTTTTTTGTTGTTTCC..............................................................................................................................201.000.00-----1.00----------------------------------------------
....................................................................................................................................................................................................................AAAGATGCTGAAGCTGTTCAG.................2131.001.00----------1.00-----------------------------------------
................................................................................................ATGAGTGATTTGGTTTTTTGTTGTTTTATCTC..........................................................................................................................321.000.001.00---------------------------------------------------
........................................................................................................TTTGGTTTTTTGTTGTTTTATTTTCAT.......................................................................................................................271.000.001.00---------------------------------------------------
........................................ACTCTTAATTCCTACCTCG...............................................................................................................................................................................................191.000.00-------1.00--------------------------------------------
.....................................................................................................TGATTTGGTTTTTTGTTGTTTTATTTTTATTGA....................................................................................................................3311.001.001.00---------------------------------------------------
....................................................................................................................................................................................................................AAAGATGCTGAAGCTGTT....................1830.670.67------------------------0.33----------------0.33----------
...............................................................................................................................................................................................................................AGCTGTTCAGAAGTTCTTCCTTGAAG.2620.500.50----------0.50-----------------------------------------
.............................................................................................................................................................................................................TGACCTTAAAGATGCTGAAGC........................2140.500.50----0.25---------------------------------------0.25-------
............................................................................................................................................................................................................................TGAAGCTGTTCAGAAGTT............1840.500.50---------0.50------------------------------------------
...............................................................................................................................................................................................................................AGCTGTTCAGAAGTTCTTCCTTG....2320.500.50--0.50-------------------------------------------------
.......................................................................................................................................................................................................................................AGAAGTTCTTCCTTGAAGA1920.500.50--------------------------0.50-------------------------
.....................................................................................................................................................................................................................................TCAGAAGTTCTTCCTTGAAG.2020.500.50---------------------------0.50------------------------
...............................................................................................................................................................................................................ACCTTAAAGATGCTGAAGCTGTTCA..................2530.330.33----------------------0.33-----------------------------
......................................................................................................................................................................................................AGTTACCTGACCTTAAAGATGCTGAAG.........................2730.330.33--0.33-------------------------------------------------
...........................................................................................................................................................................................................................CTGAAGCTGTTCAGAAGTTCT..........2130.330.33------------------------------------------0.33---------
..........................................................................................................................................................................................................ACCTGACCTTAAAGATGCTGAA..........................2230.330.33------------------------------0.33---------------------
..............................................................................................................................................................................................................................AAGCTGTTCAGAAGTTCTTC........2030.330.33---------------------0.33------------------------------
..............................................................................................................................................................................................................GACCTTAAAGATGCTGAAGCTGTTCAGAAG..............3030.330.33------------------------------------0.33---------------
..................................................................................................................................................................................................................TTAAAGATGCTGAAGCTGTTCAGAAGTTC...........2930.330.33-----------------------0.33----------------------------
...............................................................................................................................................................................................................................AGCTGTTCAGAAGTTCTT.........1830.330.33-------------------------------------0.33--------------
..............................................................................................................................................................................................................GACCTTAAAGATGCTGAAGCTGTTCA..................2630.330.33----------------------0.33-----------------------------
............................................................................................................................................................................................................CTGACCTTAAAGATGCTGAAGCTGTTC...................2730.330.33-----------------------------0.33----------------------
...................................................................................................................................................................................................................TAAAGATGCTGAAGCTGTTCAGAAGTT............2730.330.33----------------------------------------0.33-----------
.....................................................................................................................................................................................................................AAGATGCTGAAGCTGTTCAGAAGTTC...........2630.330.33-----------------------------------0.33----------------
...................................................................................................................................................................................................................TAAAGATGCTGAAGCTGTTCAG.................2230.330.33---------------------------------------0.33------------
........................................................................................................................................................................................................................ATGCTGAAGCTGTTCAGAAGTTCTTC........2630.330.33-------------------------------------------0.33--------
........................................................................................................................................................................................................................ATGCTGAAGCTGTTCAGA................1830.330.33-------------------------------0.33--------------------
....................................................................................................................................................................................................................AAAGATGCTGAAGCTGTTCAGAAGTTC...........2730.330.33-----------------------0.33----------------------------
......................................................................................................................................................................................................................AGATGCTGAAGCTGTTCAGAAG..............2230.330.33--------------------------------0.33-------------------
...........................................................................................................................................................................................................CCTGACCTTAAAGATGCTGAAGCTGT.....................2630.330.33----------------------------------0.33-----------------
..........................................................................................................................................................................................................ACCTGACCTTAAAGATGCTGAAGC........................2430.330.33---------------------------------0.33------------------
...........................................................................................................................................................................................................CCTGACCTTAAAGATGCT.............................1840.250.25------------------------------------------------0.25---
..........................................................................................................................................................................................................ACCTGACCTTAAAGATGCT.............................1940.250.25-------------------------------------------------0.25--
.................................................................................................................................................................................................................CTTAAAGATGCTGAAGCT.......................1840.250.25----------------------------------------------0.25-----
......................................................................................................................................................................................................AGTTACCTGACCTTAAAGATGCT.............................2340.250.25-----------------------------------------------0.25----
...........................................................................................................................................................................................................CCTGACCTTAAAGATGCTGA...........................2040.250.25------------------------0.25---------------------------
.............................................................................................................................................................................................................TGACCTTAAAGATGCTGA...........................1850.200.20----0.20-----------------------------------------------
...........................................................................................................................................................................................................CCTGACCTTAAAGATGC..............................1750.200.20--------------------------------------------------0.20-

Antisense strand
AAACTCAAGTTTTTTCTTTTATTCATTTGAATGTAGATGAACTCTTAATTCCTACAAGTATTCAGGAGTAAAGTTCTTCTATCAGATTTTTTTAGAATGAGTGATTTGGTTTTTTGTTGTTTTATTTTTATTGATATCTGTGTATTGGTTATATCCCCTGGCATAATTGTGGTGTCATTTATTAAATATTTTATTTCCAGTTACCTGACCTTAAAGATGCTGAAGCTGTTCAGAAGTTCTTCCTTGAAGA
..........................................................................................................(((........(((((.........((((((((((((...((........))..))))).....)))))))......)))))........)))...................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................AAGTATTCAGGAGTAACAAG............................................................................................................................................................................... 201.000.00-------1.00--------------------------------------------
......................................................................................................................................................................................................................................CAAGGAAGAACTTCTG.... 1670.140.14---------------------------------------------------0.14