ID: uc001hwd.2_intron_25_0_chr1_234601455_r.3p
GENE: (4)
chr1:234601405-234601654-


(1)
B-CELL 		(2)
BREAST 		(10)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
GTACTTACTTTGTTTTTCTGGTAGAATTAAGCTTCCCCTCCAGGACCAGCACTAAATTTAGCCTGCAGCGTAAGAGATCAGCTTTGCTTATAGCAGGTCTTCTGTAAGCCTGTGTAGGATGTTCAATCAGGGAAACTGACTTCAAAATTGTATTTACAACTAAGTTTCAATTACGTGTCTTTTTTTTTTTTTTTTTTTAGTTTATTATTGGACCATTAATGGATGCGCTTTCAGAGAGCTCTCTGTATAG
..............................................................................................(((.(((....))))))....(((((......((((.....))))......(((((.(((((....)))))..)))))....))))).....................................................................
..............................................................................................95.......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343337SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189785SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................TTCTGTAAGCCTGTGAAG.....................................................................................................................................1812.000.00--5.00-1.00-1.003.00----1.00-------1.00-----
...................................................................................................TTCTGTAAGCCTGTGAAGG....................................................................................................................................196.000.00--1.001.001.00-2.00----------1.00--------
...............................................................................................................................................................................................................TTGGACCATTAATGGATGCGCTTTCAGAGT.............302.000.00--------2.00-----------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTAGTTCC..............................................272.000.002.00-------------------------
...................................................................................................TTCTGTAAGCCTGTGAGGA....................................................................................................................................192.000.00----2.00---------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTGAG......................................................241.000.00-1.00------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTATTA................................................271.000.00-----1.00--------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTTTAAA................................................301.000.001.00-------------------------
...................................................................................................TTCTGTAAGCCTGTGAAGT....................................................................................................................................191.000.00---------1.00----------------
...............................................................................................................................................................................................................TTGGACCATTAATGGATGCGCTTTCAGAGAGCTCTC.......3611.001.00----------------------1.00---
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTATTTC...............................................281.000.001.00-------------------------
................................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTAGTTCCCC............................................301.000.00---1.00----------------------
...................................................................................................TTCTGTAAGCCTGTGAA......................................................................................................................................171.000.00----------1.00---------------
...........................................................................................................................................................................................................ATTATTGGACCATTAATGGATGCGC......................2511.001.00--------------1.00-----------
..................................................ACTAAATTTAGCCTGCACAG....................................................................................................................................................................................201.000.00---------1.00----------------
..........................................................................................................................................................................TTACGTGTCTTTTTTTTTTTAG..........................................................221.000.001.00-------------------------
.............................................................................................................................................................................CGTGTCTTTTTTTTTTTTTTTACTT....................................................251.000.001.00-------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTATGC................................................271.000.001.00-------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTAGCCT...............................................281.000.00---1.00----------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTAAAA.....................................................251.000.001.00-------------------------
.................................................................................................................................................................................................................................CGCTTTCAGAGAGCTCTA.......181.000.00---------------------1.00----
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTAA........................................................221.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTAATG.....................................................251.000.00-1.00------------------------
..............................................................................................................................................................................................TTTTTTTTAGTTTATTATTGGACC....................................2411.001.00-1.00------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTAG...................................................271.000.001.00-------------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTAGTTTAGCCG..........................................311.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTGGCC....................................................261.000.001.00-------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCCAT................................................271.000.001.00-------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTAGTTTACC............................................281.000.00-----1.00--------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTAG......................................................241.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTG....................................................261.000.00-----------1.00--------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTAATG..................................................281.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTTCCCG................................................301.000.001.00-------------------------
............................................ACCAGCACTAAATTTCTC............................................................................................................................................................................................181.000.00------1.00-------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCTGC................................................271.000.00-1.00------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTAAAGG...............................................281.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTCT........................................................221.000.00-1.00------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCAC.................................................261.000.001.00-------------------------
................................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC.................................................251.000.001.00-------------------------
...........................................................................................................................................................................TACGTGTCTTTTTTTTTTTTTTTTTTTAGGTGT..............................................331.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTGT...................................................271.000.00-1.00------------------------
....................................................................................................................................................................................TTTTTTTTTTTTTTTTTTAGTTTATTTCC.........................................291.000.00-1.00------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTGCC...........................................................191.000.001.00-------------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTAGTTCATC............................................291.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTAATG....................................................261.000.001.00-------------------------
..............................................................................................................................................................................................................ATTGGACCATTAATGGATGC........................2011.001.00------------------1.00-------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTTC...................................................271.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTCCC.....................................................251.000.001.00-------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTTTTTTTTTTTTTC.................................................291.000.001.00-------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCCCG................................................271.000.001.00-------------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTAGTTTGTG............................................291.000.00-1.00------------------------
............................................................................................................................................................................ACGTGTCTTTTTTTTTAATG..........................................................201.000.00---1.00----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTAGTTAG..............................................271.000.001.00-------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTATT.................................................261.000.00-1.00------------------------
.........................................................................................................................................................................ATTACGTGTCTTTTTTTTTTTTTTTTTTTA...................................................3011.001.001.00-------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTAGTTTATTTTAT........................................311.000.00---1.00----------------------
...................................................................................................TTCTGTAAGCCTGTGA.......................................................................................................................................161.000.00-------------------1.00------
.........................................................................................................................................................................ATTACGTGTCTTTTTTTTTTTTTTTTTTAG...................................................301.000.001.00-------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTAGTTGAG.............................................271.000.001.00-------------------------
.........................................................................................................................................................................ATTACGTGTCTTTTTTTTTTTTTTTTTA.....................................................281.000.001.00-------------------------
......................................................................................................TGTAAGCCTGTGTAGGCGTC................................................................................................................................201.000.00-----1.00--------------------
........................................................................................................................................................................................................TTTATTATTGGACCATT.................................1711.001.00----------------1.00---------
...........................................................................................................................................................................TACGTGTCTTTTTTTTTTTTTTTAG......................................................251.000.001.00-------------------------
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTAAATG...............................................281.000.00-----1.00--------------------
.............................................................................................................................................................................CGTGTCTTTTTTTTTTTTTTTTTTTTGGG................................................291.000.00-1.00------------------------
..................................................................................................................................GGAAACTGACTTCAAAA.......................................................................................................1740.250.25-----------------------0.25--
...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTAGTT................................................2740.250.250.25-------------------------
.........TTGTTTTTCTGGTAGAA................................................................................................................................................................................................................................1770.140.14-------------------------0.14

Antisense strand
GTACTTACTTTGTTTTTCTGGTAGAATTAAGCTTCCCCTCCAGGACCAGCACTAAATTTAGCCTGCAGCGTAAGAGATCAGCTTTGCTTATAGCAGGTCTTCTGTAAGCCTGTGTAGGATGTTCAATCAGGGAAACTGACTTCAAAATTGTATTTACAACTAAGTTTCAATTACGTGTCTTTTTTTTTTTTTTTTTTTAGTTTATTATTGGACCATTAATGGATGCGCTTTCAGAGAGCTCTCTGTATAG
..............................................................................................(((.(((....))))))....(((((......((((.....))))......(((((.(((((....)))))..)))))....))))).....................................................................
..............................................................................................95.......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343337SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189785SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................CCAGGACCAGCACTAAACTC............................................................................................................................................................................................... 202.000.00-2.00------------------------
.............................................................................................................................................................................CGTGTCTTTTTTTTTTGCGA......................................................... 201.000.00-------------1.00------------
.............................................................................................................................................................................CGTGTCTTTTTTTTTTTCGGA........................................................ 211.000.00--------1.00-----------------
...................................................................................................................................................................................AACTAAAAAAAAAAAAAAAAAAA................................................ 2301.001.00---------------1.00----------
...................................................................................................CACAGGCTTACAGAA........................................................................................................................................ 1560.170.17------------------------0.17-