| (1) AGO2.ip | (2) BRAIN | (6) BREAST | (12) CELL-LINE | (4) CERVIX | (1) HEART | (1) HELA | (2) LIVER | (1) OTHER | (1) RRP40.ip | (4) SKIN | (1) UTERUS |
| CCCCACGCAGAGGAGCAGAGCAGTTATGCTCACCCCTTGGAGTGCAGCAGGTACAGGGAAGGTTAAGGCTTAAAAATCCATTTCTGTTGTTGTCACCGTGAGTTCATGATTGCCCAACATTGCTTATAAAGTTATAGAATTTTGGGGCTGAAGCTCCATTCAGGATGAAAGTGTGGTATAACATTATTCATCTCTGTTACTGGAGACTTGCTGACTTTTCTGCATCTAGTTTTCACTGAATCATTTCAGATGAGCAAAAGTACCTACTTTCAGAGAAGTTAGAAAATTAAGGTTTATGTGGTTTCCTTAGTTTTTGGTAGATAGGCTGTTTGATAATGACCATTTATATCTGTACACTGCCCCCCCCCCCCCACCTTTAGAAAGGATAGTGTGCTACGTGCAAAAGACGTGGAGGCAAATTGGGGAAGTATGGCCTAGTAACTTTATTTTTTATTTCAGTGTTTTGGAAGAATCGTCATCTTCCCAAGGATGGGGAAAAATAGTTGCAC ....................................................(((((((.((...............)).)))))))....(((.(((.((((((((((((..................)))))).))))))))))))......................................................................................................................................................................................................................................................................................................................................................................... ..................................................51.................................................................................................150..................................................................................................................................................................................................................................................................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR029128(GSM416757) H520. (cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | GSM532876(GSM532876) G547T. (cervix) | SRR189784 | TAX577580(Rovira) total RNA. (breast) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR037937(GSM510475) 293cand2. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR444061(SRX128909) Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin) | GSM450606(GSM450606) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR040019(GSM532904) G701T. (cervix) | SRR094130(GSM651906) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR040037(GSM532922) G243T. (cervix) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR189785 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | TAX577579(Rovira) total RNA. (breast) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR040024(GSM532909) G613N. (cervix) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................AAAGTTATAGAATTTAGAG........................................................................................................................................................................................................................................................................................................................................................................... | 19 | 25.00 | 0.00 | 4.00 | 6.00 | 6.00 | 5.00 | - | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................AAAGTTATAGAATTTAGA............................................................................................................................................................................................................................................................................................................................................................................ | 18 | 19.00 | 0.00 | 10.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATGGGGAAAAATAGT..... | 19 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................TAAAGTTATAGAATTTAGAG........................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................TTGGTAGATAGGCTGTT................................................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAATCGTCATCCTG.......................... | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................ATAGAATTTTGGGGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................GCCCCCCCCCCCCCACCAGGG.................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCCCCCCCCCCCCCGGC...................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTATTTTTTATTTCTGAG................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATTTTTTATTTCCTTG................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..........................................................................................................................................................TCCATTCAGGATGAAAGTGTGGTA........................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCCCCCCCCCCCCCAGGA..................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................GTGCAGCAGGTACAGGTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAAATTGGGGAAGTA............................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGGGAAGTATGGC........................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................TGGAGTGCAGCAGGTACAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................GTTTATGTGGTTTCCCTCC....................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................GTTTCCTTAGTTTTTAGGT.............................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................................................................................CCCCCCCCCACCTTTTATC............................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................AGGGAAGGTTAAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |
| CCCCACGCAGAGGAGCAGAGCAGTTATGCTCACCCCTTGGAGTGCAGCAGGTACAGGGAAGGTTAAGGCTTAAAAATCCATTTCTGTTGTTGTCACCGTGAGTTCATGATTGCCCAACATTGCTTATAAAGTTATAGAATTTTGGGGCTGAAGCTCCATTCAGGATGAAAGTGTGGTATAACATTATTCATCTCTGTTACTGGAGACTTGCTGACTTTTCTGCATCTAGTTTTCACTGAATCATTTCAGATGAGCAAAAGTACCTACTTTCAGAGAAGTTAGAAAATTAAGGTTTATGTGGTTTCCTTAGTTTTTGGTAGATAGGCTGTTTGATAATGACCATTTATATCTGTACACTGCCCCCCCCCCCCCACCTTTAGAAAGGATAGTGTGCTACGTGCAAAAGACGTGGAGGCAAATTGGGGAAGTATGGCCTAGTAACTTTATTTTTTATTTCAGTGTTTTGGAAGAATCGTCATCTTCCCAAGGATGGGGAAAAATAGTTGCAC ....................................................(((((((.((...............)).)))))))....(((.(((.((((((((((((..................)))))).))))))))))))......................................................................................................................................................................................................................................................................................................................................................................... ..................................................51.................................................................................................150..................................................................................................................................................................................................................................................................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR029128(GSM416757) H520. (cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | GSM532876(GSM532876) G547T. (cervix) | SRR189784 | TAX577580(Rovira) total RNA. (breast) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR037937(GSM510475) 293cand2. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR444061(SRX128909) Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin) | GSM450606(GSM450606) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR040019(GSM532904) G701T. (cervix) | SRR094130(GSM651906) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR040037(GSM532922) G243T. (cervix) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR189785 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | TAX577579(Rovira) total RNA. (breast) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR040024(GSM532909) G613N. (cervix) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................................................................................................................................................................GCCCCCCCCCCCCCACCGCC................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCCCCCCCCCCCCCCCCC..................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................................................................................ACACTGCCCCCCCCCCCCTTTT...................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................................................................................ACACTGCCCCCCCCCCCCTGGT...................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................AAAAATCCATTTCTGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................TGAGTTCATGATTGCTCT......................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................................................................................................ACTGCCCCCCCCCCCCA......................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................TTGATAATGACCATTGGC.................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................................................................................................ACTGCCCCCCCCCCCCCG........................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................TTGATAATGACCATTGGCT................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................TTAGAAAATTAAGGTAATG.................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................................................................................................................................AGAAAGGATAGTGTGTAC................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .......................................................................AAAAATCCATTTCTGGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................AGCAAAAGTACCTACTATGT............................................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .................................................................................................................CCAACATTGCTTATAAAAA......................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................................................................................................GCCCCCCCCCCCCCATGGG.................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................................................................................................CACTGCCCCCCCCCCCCAATA...................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |