ID: uc001hsn.2_intron_2_0_chr1_228401412_f
GENE: (3)
chr1:228401362-228401924+


(1)
AGO1.ip
(2)
AGO2.ip
(4)
B-CELL
(3)
BRAIN
(7)
BREAST
(23)
CELL-LINE
(8)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(5)
LIVER
(1)
OTHER
(19)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTGCGAGACGCCAGAGGGCAGCCGCACGGTGGCGGAGCTCGCAGTCCAAGGCAGGCGGGGCGGGGCACGGGGCGGGGCACAGGGCGGCTTCGGGGAGGTAGCGGGGGCAAGGAGGCACCGAGAAGGGAGCCGGGGGCGGGGGAGGGGGGAGCCAGGCCGCACGGGCTGGGCGGGCACGGGGGCGGGCAGGGTGCAGACGGACTGGGCTTGCGAGGTACGAGTTGGGACTGGGGCAGGCAGGGGCGGGACTGGGGCGGGAAGGGCAGGTAAGGTGGGGGCGGAGGAGCAAGCTCGGGCCGGGCACGGGGTGGTGATTAGGGGGAAGGGGAGACGGAGTGGGCAGGGGTCTTGTGGGACCGAGCTGGGACTTGGGCCGGCGGGACAGGTAAGGGGTTGCGCGGGGGAGTGAATCGGAGGCAGTTGGGAACCGGGAGACAGGGGGCAAGCGGAGGAGCGAGTCTGGAGCGGGGCGTGCAGGGGCTGGTCTGACTGGCCCGGCTCCCTCCACCCCAGGAAACCTCCTCCGAAAGCTCCCTCGGAAGACGGCGGTGCGCGTGGGCGAC
..................................................((.(((...((...((.((..((...((.....)).))..)).....)).)).((.((......)).)).........)))....))..........................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...........................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040018(GSM532903)
G701N. (cervix)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040041(GSM532926)
G612T. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................GGGGCACGGGGCGGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1719.000.0019.00------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................TGGGGCGGGAAGGGCCGGG.......................................................................................................................................................................................................................................................................................................196.000.00--------3.00-----1.00-----------1.00-------------------------------------1.00--------------------
..................CAGCCGCACGGTGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................173.000.00--3.00----------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................CTGGGGCGGGAAGGGCCGGG.......................................................................................................................................................................................................................................................................................................203.000.00---------1.00---1.00------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................GTCTTGTGGGACCGAGCTGG......................................................................................................................................................................................................2012.002.00-----2.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................AGGGGCGGGACTGGGGC....................................................................................................................................................................................................................................................................................................................1731.331.33--------------------------------------------------------------------0.67-0.33--0.33-----------
.....................................................................................................................................................................................................................GGTACGAGTTGGGACTGTGG..........................................................................................................................................................................................................................................................................................................................................201.000.00---------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCTGACTGGCCCGG.................................................................1911.001.00----1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................GGGGGAAGGGGAGACGAAA...................................................................................................................................................................................................................................191.000.00------------------------1.00------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGCGGGGCGTGCA.......................................................................................1811.001.00--------------------1.00----------------------------------------------------------------
.......................................................................................................................................................................GGGCGGGCACGGGGGCGGTG........................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------------1.00-----------------------------------------------
.....................................................................................................................................GGGCGGGGGAGGGGGGTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------------1.00-------------------------------------------------------------------
.............................................................................................................................................................................................................................TTGGGACTGGGGCAGGCACCAG................................................................................................................................................................................................................................................................................................................................221.000.00-------1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGCGGGGCGTGCAG......................................................................................1911.001.00--------------------1.00----------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGGCTTGCGAGGAATT........................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------1.00-----------------------------------------------------
..............................................................................................................................................................................................................................................AGGGGCGGGACTGGGGCGGGTA...............................................................................................................................................................................................................................................................................................................221.000.00----1.00--------------------------------------------------------------------------------
.........GCCAGAGGGCAGCCGCACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------1.00--------------------------------------------------------
................................................................................................................................................................................................................................................................................................................GGGGTGGTGATTAGGGGG.................................................................................................................................................................................................................................................1811.001.00----------------1.00--------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................GGGGCGGAGGAGCAATGG...............................................................................................................................................................................................................................................................................181.000.00------------------1.00------------------------------------------------------------------
.............................................................GGGGCACGGGGCGGGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------1.00---------------------------------------
.........................................................................................................................................................................................................................................................TGGGGCGGGAAGGGCCGG........................................................................................................................................................................................................................................................................................................181.000.00----------------------------------------------1.00--------------------------------------
.........................................................................................TCGGGGAGGTAGCGGGGGCAAGGAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00-----------------------1.00-------------------------------------------------------------
....................................................................................................................................................................................................................AGGTACGAGTTGGGACTGG............................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------1.00------------------------------------------
..................................................................................................................................................................................................................................................GCGGGACTGGGGCGGGAAGGG............................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------1.00-----------------------------------
............................................................................................................................................................CCGCACGGGCTGGGCGGGCTC..................................................................................................................................................................................................................................................................................................................................................................................................211.000.00--------------------------------------------1.00----------------------------------------
...................................................................................................................................GGGGGCGGGGGAGGGGGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------1.00-------------------------------------------------
..................CAGCCGCACGGTGGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--1.00----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GGACTGGGGCGGGAAGTGG...........................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00-------------------------
.............................................................GGGGCACGGGGCGGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.001.00------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GAGGTACGAGTTGGGACTG.............................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00---------------------------------
...................................................................................................................................................................................................GACGGACTGGGCTTGCGAGGTACGAGTTG...................................................................................................................................................................................................................................................................................................................................................2911.001.00--------------------------------------------------------------1.00----------------------
.............................................................................................................................................................................................................................................................................................................................GGGGGAAGGGGAGACGTGA...................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00-------------------------------------------
.........................ACGGTGGCGGAGCTCGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------------------1.00------------------------------------------------------
...............................................................................................................................................................................................................................................GGGGCGGGACTGGGGCGGG.................................................................................................................................................................................................................................................................................................................1921.001.00-----------------------------------------------------------------------0.500.50------------
...........................................................GCGGGGCACGGGGCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--------------------------------------------------------1.00----------------------------
..............................................................................................................................................................................................................................................AGGGGCGGGACTGGGTAA...................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------------------------------1.00--------------------------
......................................................................................................................................GGCGGGGGAGGGGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2001.001.00------------------------------------------------------1.00------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGGGCTGGTCTAATA........................................................................191.000.00-1.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................CGGGCACGGGGGCGGGCAGGGA...................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----------------------------------------------------------------1.00-------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGGGCAAGCGGAGGAGC............................................................................................................2011.001.00----------------1.00--------------------------------------------------------------------
..............................................................GGGCACGGGGCGGGGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------1.00-------------------------------------
..........................................................................................................................................................................................................................GAGTTGGGACTGGGGCTGTT.....................................................................................................................................................................................................................................................................................................................................201.000.00---------------------1.00---------------------------------------------------------------
............................................................................................................................GGGAGCCGGGGGCGGGTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------
......................................................................................................................................GGCGGGGGAGGGGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................1701.001.00-------------------------------------------------------------1.00-----------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGGCAGTTGGGCA........................................................................................................................................171.000.00---------------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................GGGGCGGGACTGGGGC....................................................................................................................................................................................................................................................................................................................1651.001.00------------------------0.20--------------------------------------------0.60---------0.20-----
...................................................................................................................................GGGGGCGGGGGAGGGGGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGCGGGGCGTGCAGGGGCCGG...............................................................................261.000.00---------------------------------------------------------1.00---------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCGGAGGCAGTTGGGA.........................................................................................................................................2111.001.00-----1.00-------------------------------------------------------------------------------
..............................................................................................................................................................GCACGGGCTGGGCGGGACTG.................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------------------------------------------1.00---------------------
..........................................................................................CGGGGAGGTAGCGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------1.00-----------------------------------------------------------------------
..............................................................................................................................................................................................................................................AGGGGCGGGACTGGGGCGGGGA...............................................................................................................................................................................................................................................................................................................221.000.00---------------------------------1.00---------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGGAGCGGGGCACG.........................................................................................181.000.00-1.00-----------------------------------------------------------------------------------
..................................GAGCTCGCAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-----------1.00-------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGTGCGCGTGGGAAG.191.000.00------1.00------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGCAGTTGGGAACCGGGA..................................................................................................................................2211.001.00----1.00--------------------------------------------------------------------------------
.............................................................................................................................GGAGCCGGGGGCGGGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------1.00----------------------------------
..............................................................................................................................................................GCACGGGCTGGGCGGGCAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------------------------------------------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................................GCGGAGGAGCAAGCT...............................................................................................................................................................................................................................................................................1511.001.00------------------------------------------------------------1.00------------------------
.............................TGGCGGAGCTCGCAGTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------------------1.00---------------------------------------------
..........................................................................................CGGGGAGGTAGCGGGGGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------1.00---------------------------------------------------------------------------
.............................................................................................................................................................................GCACGGGGGCGGGCAGTTT...................................................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00------------------------------------------------------------------------------
.....................................................GGCGGGGCGGGGCACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................GGGGCGGAGGAGCAAGCGCC.............................................................................................................................................................................................................................................................................201.000.00--------------------------------------1.00----------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGGAGCGGGGCTGT.........................................................................................181.000.00-1.00-----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................GGGACTGGGGCGGGAAGAAA...........................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------1.00--------------------------------
...........................................................................................................................AGGGAGCCGGGGGCGGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------1.00--------------------------------------------------
............................................................................................................AAGGAGGCACCGAGAAGGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00-------------------------------
..............................................................................................................................................................GCACGGGCTGGGCGGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00---------------------------------------------------------------------
............................................................................................................................GGGAGCCGGGGGCGGGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------1.00--------------------------------------------
..................CAGCCGCACGGTGGCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--1.00----------------------------------------------------------------------------------
..........................CGGTGGCGGAGCTCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------------------1.00---------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGGCGTGCAGGC....................................................................................161.000.00-1.00-----------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................CTGGGGCGGGAAGGGCCG.........................................................................................................................................................................................................................................................................................................181.000.00------------1.00------------------------------------------------------------------------
.....................CCGCACGGTGGCGGAGCTCGCAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-------------------1.00-----------------------------------------------------------------
.....AGACGCCAGAGGGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-------------------------1.00-----------------------------------------------------------
..............................................................................................................................................................................................................................................AGGGGCGGGACTGGGG.....................................................................................................................................................................................................................................................................................................................1680.880.88----------------------------------------------------------------------0.25-----0.120.25---0.12-0.12-
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAAGCGGAGGAGC............................................................................................................1630.670.67-----------------------0.33---------------------------------------------------0.33---------
.............................................................GGGGCACGGGGCGGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1750.600.600.60------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GGGACTTGGGCCGGCGG.......................................................................................................................................................................................1720.500.500.50------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................GCGGGACTGGGGCGGGA................................................................................................................................................................................................................................................................................................................1730.330.33----0.33--------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTCTGACTGG......................................................................1590.220.22------------------------------------------------------------------------------0.22------
..........................................................................................................................................................................CGGGCACGGGGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................1560.170.17----------------------------------------------------------------------------0.17--------
..........................................................................................................................................................................CGGGCACGGGGGCGGTTCT......................................................................................................................................................................................................................................................................................................................................................................................1960.170.170.17------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................AGGGGCGGGACTGGGGA....................................................................................................................................................................................................................................................................................................................1780.120.88----------------------------------------------------------------------------------0.12--

Antisense strand
CTGCGAGACGCCAGAGGGCAGCCGCACGGTGGCGGAGCTCGCAGTCCAAGGCAGGCGGGGCGGGGCACGGGGCGGGGCACAGGGCGGCTTCGGGGAGGTAGCGGGGGCAAGGAGGCACCGAGAAGGGAGCCGGGGGCGGGGGAGGGGGGAGCCAGGCCGCACGGGCTGGGCGGGCACGGGGGCGGGCAGGGTGCAGACGGACTGGGCTTGCGAGGTACGAGTTGGGACTGGGGCAGGCAGGGGCGGGACTGGGGCGGGAAGGGCAGGTAAGGTGGGGGCGGAGGAGCAAGCTCGGGCCGGGCACGGGGTGGTGATTAGGGGGAAGGGGAGACGGAGTGGGCAGGGGTCTTGTGGGACCGAGCTGGGACTTGGGCCGGCGGGACAGGTAAGGGGTTGCGCGGGGGAGTGAATCGGAGGCAGTTGGGAACCGGGAGACAGGGGGCAAGCGGAGGAGCGAGTCTGGAGCGGGGCGTGCAGGGGCTGGTCTGACTGGCCCGGCTCCCTCCACCCCAGGAAACCTCCTCCGAAAGCTCCCTCGGAAGACGGCGGTGCGCGTGGGCGAC
..................................................((.(((...((...((.((..((...((.....)).))..)).....)).)).((.((......)).)).........)))....))..........................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...........................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040018(GSM532903)
G701N. (cervix)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040041(GSM532926)
G612T. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................GCCGGGGGCGGGGGAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................ 196.000.00---4.00---2.00-----------------------------------------------------------------------------
............................................................................................GGGAGGTAGCGGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 162.000.00----------1.00--------------------------------------------1.00-----------------------------
................................................................................................................................GCCGGGGGCGGGGGAGGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................... 202.000.00------------1.00-----------------------------------------------------1.00------------------
...........................................................................................................................AGGGAGCCGGGGGCGGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------1.00--------------------------------------------------------------
...........ACCGTGCGGCTGCCCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00-----------1.00-------------------------------------------------------------------------
.................TGGACTGCGAGCTCCGCCACCGTGCGGCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 3111.001.00-------------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGAAACCTCCTCCAG.................................... 191.000.00--------------1.00----------------------------------------------------------------------
.............................................................................................................................GGAGCCGGGGGCGGGGGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00----------------------1.00--------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................GGGAAGGGGAGACGGAATCG................................................................................................................................................................................................................................ 201.000.00-----------------1.00-------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCCACCCCAGGAAAG............................................. 181.000.00----------1.00--------------------------------------------------------------------------
..............................................................GGGCACGGGGCGGGGCAAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00-1.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCTCCCTCCACCCAAT.................................................. 201.000.001.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACTGGCCCGGCGTAG............................................................ 191.000.00-------------------------------------------1.00-----------------------------------------
.......................................................................................................................................................................GGGCGGGCACGGGGGCGT.......................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------1.00------------------------------------------------------------------------------
................................................................................................................................GCCGGGGGCGGGGGAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00-----------------------------1.00-------------------------------------------------------
.............................................................................................................................GGAGCCGGGGGCGGGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------1.00------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................GGACTTGGGCCGGCGTTC..................................................................................................................................................................................... 181.000.00------------------------------------1.00------------------------------------------------
............................................................................................................................CCCCCGCCCCCGGCTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................... 1860.330.33--------------------------------------------------------------------------0.33----------
.................................................................................................................................................................................................................................CCCTGCCTGCCCCAGTC................................................................................................................................................................................................................................................................................................................................. 1760.170.17--------------------------------------------------------------------------------0.17----
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTGCACGCCCCG................................................................................... 1590.110.11------------------------------------------------------------------------------------0.11