ID: uc001hsm.1_intron_1_0_chr1_228397466_r.3p
GENE: AK056556(2)
chr1:228397416-228397665-


(5)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(2)
BREAST
(17)
CELL-LINE
(1)
CERVIX
(2)
HEART
(2)
HELA
(2)
LIVER
(2)
OTHER
(6)
SKIN

Sense strand
GAGCTCTGGGCTGTCCCCAGCACTCTCCAAAGTCATACAGTCAGGCCAGGTGTGGTGGCAAGCACATGTAATCCCAGCACTGTGGGAGGCAGAGGTGGGAGGATCCCTTGAGCCCAGGAGTTCGAGGCCAGCCTGGGCAACATGTGAGACCCCCATCTCTACAAAAACAATTAAAACAAATTAACTCGACATGGTGGCAGGTGCCTGCTGTCCCAGCTACTCAAGAGACTGAAGCAGGAGGATGGCTTGA
........................................................................................((..((((.((......((((((((......)))))))))).))))..))................................................................................................................
.......................................................................................88..................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037936(GSM510474)
293cand1. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................AGTTCGAGGCCAGCCTGG..................................................................................................................18014.0014.00--5.002.00-1.002.00-1.003.00-------------------------------
.....................................................................................................................GAGTTCGAGGCCAGCCTG...................................................................................................................1806.006.00--4.00---1.001.00---------------------------------
.................CAGCACTCTCCAAAGACGA......................................................................................................................................................................................................................195.000.00----5.00------------------------------------
.........................................................................................................................................................................................................................TACTCAAGAGACTGAAGAGGA............214.000.00---3.00--1.00----------------------------------
..............................................................................................GTGGGAGGATCCCTTGAGCCCAGGATTCC...............................................................................................................................292.000.00---------------2.00-------------------------
......................................................................................................................AGTTCGAGGCCAGCCTGGGCAACGGC..........................................................................................................262.000.00-2.00---------------------------------------
.....................................................................................................................GAGTTCGAGGCCAGCCTGG..................................................................................................................1902.002.00--1.00----1.00---------------------------------
............................................................................................................TGAGCCCAGGAGTTCGAGGCCAGCTGGG..................................................................................................................282.000.002.00----------------------------------------
......................................................................................................................AGTTCGAGGCCAGCCTGTT.................................................................................................................1902.001.00--------------2.00--------------------------
....TCTGGGCTGTCCCCATTC....................................................................................................................................................................................................................................181.000.00------------------------1.00----------------
......................................................................................................................AGTTCGAGGCCAGCCTG...................................................................................................................1701.001.00---------------------1.00-------------------
...........................................GGCCAGGTGTGGTGGCGGT............................................................................................................................................................................................191.000.00-----------1.00-----------------------------
...................................................................................................................................................................................................................................ACTGAAGCAGGAGGACCCC....191.000.00-1.00---------------------------------------
....................................................................TAATCCCAGCACTGTGGGAGGCAGAT............................................................................................................................................................261.000.00-1.00---------------------------------------
............................................................................................AGGTGGGAGGATCCCTTGAGCCCAG.....................................................................................................................................2501.001.00--------1.00--------------------------------
.........................................................................................................................TCGAGGCCAGCCTGGGCAACATCGCA.......................................................................................................261.000.00-1.00---------------------------------------
...............................................................................................TGGGAGGATCCCTTGAGCCCAGTTAT.................................................................................................................................261.000.00--------------------------------1.00--------
.........................................................................................................................TCGAGGCCAGCCTGGGCGTAG............................................................................................................211.000.001.00----------------------------------------
...............................................................................................................................................................................ACAAATTAACTCGACATG.........................................................1811.001.00-----------------------------1.00-----------
............................................................................................................TGAGCCCAGGAGTTCGAGGCCACAGC....................................................................................................................261.000.001.00----------------------------------------
.................................................................................................................................................................................................................................AGACTGAAGCAGGAGGATAA.....201.000.00-----------------------1.00-----------------
...............................................................................................TGGGAGGATCCCTTGAGCCCGAAG...................................................................................................................................241.000.001.00----------------------------------------
...........................................................................AGCACTGTGGGAGGCAGAGTAA.........................................................................................................................................................221.000.00------------------1.00----------------------
..............................................................................................................AGCCCAGGAGTTCGAGGCCAGCCGAGC.................................................................................................................271.000.001.00----------------------------------------
...........................................................................................................TTGAGCCCAGGAGTTCGAGGCCAGCCGGGC.................................................................................................................301.000.001.00----------------------------------------
.....................................................................AATCCCAGCACTGTGGGAGGCAGAGGTAGG.......................................................................................................................................................301.000.001.00----------------------------------------
......................................................................................................................AGTTCGAGGCCAGCCTGGAATA..............................................................................................................2201.0014.00----------1.00------------------------------
.........................................................................................................................................................................................................................TACTCAAGAGACTGAAGGG..............191.000.00--------1.00--------------------------------
...........................................................................................................TTGAGCCCAGGAGTTCGAGGCCAGCCTGGCA................................................................................................................311.000.00-1.00---------------------------------------
.......................................................................................................................GTTCGAGGCCAGCCTTTT.................................................................................................................181.000.00----------1.00------------------------------
.........................................................................................................................TCGAGGCCAGCCTGGGCAACGGTG.........................................................................................................241.000.001.00----------------------------------------
..............................................................................................................AGCCCAGGAGTTCGAGGCCAGCCGGGC.................................................................................................................271.000.001.00----------------------------------------
......................................................................................................................AGTTCGAGGCCAGCCTGGA.................................................................................................................1901.0014.00-------1.00---------------------------------
.........................................................................................................................TCGAGGCCAGCCTGGGCAACGGCG.........................................................................................................241.000.001.00----------------------------------------
.......................................................................................................................................................................................................................GCTACTCAAGAGACTGAAGCAGGAGGATG......2930.670.67---------------------------------0.67-------
..........................................................................CAGCACTGTGGGAGGCAGAGGTGGGAG.....................................................................................................................................................2730.330.33----------------------------------0.33------
.............................................................................................................................................................................................................................CAAGAGACTGAAGCAGGAGGATG......2330.330.33------------------------------------0.33----
.............................AAGTCATACAGTCAGGC............................................................................................................................................................................................................1730.330.33-----------------------------------0.33-----
..............................................................................................................................................................................................................................AAGAGACTGAAGCAGGAGG.........1950.200.20---------------------------------------0.20-
..........................................................................................................................................................................................................................ACTCAAGAGACTGAAGCAGGAGG.........2350.200.20-------------------------------------0.20---
...........................................................................................................................................................................................GACATGGTGGCAGGTGCCTGC..........................................2150.200.20--------------------------------------0.20--

Antisense strand
GAGCTCTGGGCTGTCCCCAGCACTCTCCAAAGTCATACAGTCAGGCCAGGTGTGGTGGCAAGCACATGTAATCCCAGCACTGTGGGAGGCAGAGGTGGGAGGATCCCTTGAGCCCAGGAGTTCGAGGCCAGCCTGGGCAACATGTGAGACCCCCATCTCTACAAAAACAATTAAAACAAATTAACTCGACATGGTGGCAGGTGCCTGCTGTCCCAGCTACTCAAGAGACTGAAGCAGGAGGATGGCTTGA
........................................................................................((..((((.((......((((((((......)))))))))).))))..))................................................................................................................
.......................................................................................88..................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037936(GSM510474)
293cand1. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
............................................................................................................TGAGCCCAGGAGTTCGAGGCCAGCCTGGGG................................................................................................................ 303.000.003.00----------------------------------------
.................................................................................................................CCAGGAGTTCGAGGCCAGCCTGGGCAACATAT......................................................................................................... 322.000.00-2.00---------------------------------------
.................................................................................................................AGGCTGGCCTCGAACTCCTGG.................................................................................................................... 2101.001.00------------1.00----------------------------
......................................................................................................................AGTTCGAGGCCAGCCTGACTT............................................................................................................... 2101.000.00-------------1.00---------------------------
....................................................................................................................GGAGTTCGAGGCCAGCCTGGGCAACAAGCC........................................................................................................ 301.000.001.00----------------------------------------
..........................................................................................................................................................................................................GCCTGCTGTCCCAGCTACGCA........................... 211.000.00--------------------1.00--------------------
..................................................................................................................CAGGAGTTCGAGGCCAGCCTGGGCAACAACCC........................................................................................................ 321.000.001.00----------------------------------------
...................................................................................................................AGGCTGGCCTCGAACTCCT.................................................................................................................... 1901.001.00------------1.00----------------------------
......................CTCTCCAAAGTCATAAGT.................................................................................................................................................................................................................. 181.000.00--------------------------1.00--------------
...........................................................................................................................................................................................GACATGGTGGCAGGTGCCTGCTCAAC..................................... 261.000.001.00----------------------------------------
.................................................................................................................CTGGCCTCGAACTCCTGG....................................................................................................................... 1801.001.00-----1.00-----------------------------------
..............................................................................................................................GCCAGCCTGGGCAACATGTTCCG..................................................................................................... 231.000.00-1.00---------------------------------------
....................................................................................................................GGAGTTCGAGGCCAGCCTGGGCAGTCC........................................................................................................... 271.000.001.00----------------------------------------
.................................................................................................................................................................................................................CTTGAGTAGCTGGGAC......................... 1601.001.00----------------------------1.00------------
................................................................................................................AGGCTGGCCTCGAACTCCTGGG.................................................................................................................... 2201.001.00-----1.00-----------------------------------
.....................................................................................................................................................CCCCCATCTCTACAAACCCC................................................................................. 201.000.00-1.00---------------------------------------
....................................................................................................................GGAGTTCGAGGCCAGCCTGGCT................................................................................................................ 221.000.00-1.00---------------------------------------
....................................................................................................................GGAGTTCGAGGCCAGCCTGGGCAACAGGAC........................................................................................................ 301.000.001.00----------------------------------------
.......................................................................................................................................................................................................GGTGCCTGCTGTCCCAGCTACTGCC.......................... 251.000.001.00----------------------------------------
.....................................................................................................................................................CCCCCATCTCTACAAAACCCC................................................................................ 211.000.001.00----------------------------------------
.........................................................................................................................................................................................................TGCCTGCTGTCCCAGCTACTAGCG......................... 241.000.00-1.00---------------------------------------
.............................................................................................GGTGGGAGGATCCCTTGAGCCCAGGCATG................................................................................................................................ 291.000.00-------------1.00---------------------------
.......................................................................................................................................................................................................GGTGCCTGCTGTCCCAGCTC............................... 201.000.00-1.00---------------------------------------
.................................................................................................................................................GAGACCCCCATCTCTACATAAT................................................................................... 221.000.00---------------------------1.00-------------
...............................................................................................................................................................................................................CTGTCCCAGCTACTCAAGCGC...................... 211.000.001.00----------------------------------------
..................................................................................................................................................AGACCCCCATCTCTACAAAGCC.................................................................................. 221.000.001.00----------------------------------------
....................................................................................................................GGAGTTCGAGGCCAGCCTGACC................................................................................................................ 221.000.00-1.00---------------------------------------
....................................................................................................................GGAGTTCGAGGCCAGCCTGGGCAACAGAGC........................................................................................................ 301.000.00-1.00---------------------------------------
.......................................................................................................................................................................................................GGTGCCTGCTGTCCCAGCTACGCC........................... 241.000.00-1.00---------------------------------------
......................................................................................................ATCCCTTGAGCCCAGGAGTTCGTTCC.......................................................................................................................... 261.000.00-------------------------1.00---------------
.......................................................................................................................................................................................................GGTGCCTGCTGTCCCAGCTACACC........................... 241.000.00-1.00---------------------------------------
..............................................................................................................................................................................................................GCTGTCCCAGCTACTGCCC......................... 191.000.001.00----------------------------------------
................................................................................................................................CAGCCTGGGCAACATGTCCTC..................................................................................................... 211.000.001.00----------------------------------------
.....................................................................................................................................................CCCCCATCTCTACAAAAACGCT............................................................................... 221.000.00------------------------------1.00----------
.....................................................................................................................CCAGGCTGGCCTCGAACTC.................................................................................................................. 1901.001.00-----1.00-----------------------------------
.....................................................................................................................................................CCCCCATCTCTACAAAAGATC................................................................................ 211.000.001.00----------------------------------------
........................................................................................................................TTCGAGGCCAGCCTGGGCAACAA........................................................................................................... 231.000.00----------------1.00------------------------
..................................................................................................GAGGATCCCTTGAGCCCATAT................................................................................................................................... 211.000.00-------------------1.00---------------------
...................................................................................................................AGGAGTTCGAGGCCAGCCTAG.................................................................................................................. 211.000.00----------------------1.00------------------
................................................GGTGTGGTGGCAAGCACATGTCGGC................................................................................................................................................................................. 251.000.001.00----------------------------------------
..................................................................................................................................................TTTTTGTAGAGATGGGGGTCT................................................................................... 2101.001.00-----------------1.00-----------------------
..................................................................................................................................................AGACCCCCATCTCTACAGCTC................................................................................... 211.000.00-1.00---------------------------------------
...............................................................................................................................................................TACAAAAACAATTAAAACACCA..................................................................... 221.000.001.00----------------------------------------
........................................................................................................................................................CCATCTCTACAAAAACACGTG............................................................................. 211.000.00-------------------------------1.00---------
........................................................................................GCAGAGGTGGGAGGATCATAT............................................................................................................................................. 211.000.00-----------1.00-----------------------------
................................................................................................................................................................................................ACAGCAGGCACCTGCCACC....................................... 1930.330.330.33----------------------------------------
........................................................................ATCCTCCCACCTCTGCCTCCCACAGTGCTGGG.................................................................................................................................................. 3230.330.33-0.33---------------------------------------
..............................................................CCACAGTGCTGGGATTACATGTG..................................................................................................................................................................... 2370.140.14----------------------------------0.14------
..........................................................................................CCTGGGCTCAAGGGATCCTCCCACCTCT.................................................................................................................................... 2880.120.12----------------------------------------0.12