ID: uc001hoi.2_intron_1_0_chr1_224378022_f.3p
GENE: (2)
chr1:224379834-224380083+


(2)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTGCTGCTGAAATGTAGACTGCTTTTTGTTTAGAATTCCCACAGCTGCTGCTGCTGCTGCTTTTTTTTTTTTTTAAGAGAGAGGAGGGAGGCAGGTCTCATGGTTTCCCTTCTCAGTGTTTGTGTCAACCATTCATCAGTCATCTTTGAAAGAACCTAGTAACACTCATTTTTCATCTTGCTGTATTTTTTCCCTTCTAGGTGAGGAAAATAGCAGCTGAATACTATGACAACCTCCCTCACTACAATTC
......................................................((.((((...(((((((...((((..((((((((((((..........)))))))))))).(((..((.......))..)))......)))).)))))))...)))).))......................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343337SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................TGCTGCTGCTTTTTTTCCG....................................................................................................................................................................................1935.000.0022.0010.00--3.00--------------------------------------------
..................................................CTGCTGCTGCTTTTTTTCCG....................................................................................................................................................................................209.000.003.006.00-----------------------------------------------
.....................................................................................................................................................................................................................CAGCTGAATACTATGACAACCTC..............2315.005.00------2.002.00---------1.00-------------------------------
...................................................TGCTGCTGCTTTTTTTTCCG...................................................................................................................................................................................203.000.002.001.00-----------------------------------------------
...................................................................................................................................................GAAAGAACCTAGTAACACT....................................................................................1913.003.00-----3.00-------------------------------------------
...................................................TGCTGCTGCTTTTTTTTTTTTTTCGAG............................................................................................................................................................................272.000.00---2.00---------------------------------------------
.........................................................................................................................................................................................................TGAGGAAAATAGCAGCTGAATA...........................2212.002.00---------1.00------------1.00--------------------------
..................................................CTGCTGCTGCTTTTTTTTTTTTTTAAG.............................................................................................................................................................................2712.002.00--1.00------------------1.00---------------------------
............................................................................................................................................................................TCATCTTGCTGTATTTTTTCC.........................................................2112.002.00-------------2.00-----------------------------------
...................................................................................................................................................................................................................AGCAGCTGAATACTATGACAACCTCCCTC..........2912.002.00------------2.00------------------------------------
............................................................................................................................................................................TCATCTTGCTGTATTTTTTCCCTTCTAG..................................................2812.002.00-------1.00--------1.00--------------------------------
.........................................................................................................................................................................................................TGAGGAAAATAGCAGCTGA..............................1911.001.00---------------------------------------------1.00---
.......................................................................................................................................................................................................GGTGAGGAAAATAGCAGCTGAATAC..........................2511.001.00-----------------------------------1.00-------------
..................................................................................................................................................................................................................................TGACAACCTCCCTCACTACAATTCCTGA281.000.00----1.00--------------------------------------------
.........................................................................................................................................................................................................................TGAATACTATGACAACC................1711.001.00-------------------------------1.00-----------------
..........................................................................AAGAGAGAGGAGGGAGGCAGGGCTC.......................................................................................................................................................251.000.00--1.00----------------------------------------------
...........................................................................................................................................................................................................AGGAAAATAGCAGCTGAATACTATGACAA..................2911.001.00-------------------------------------1.00-----------
.........................................................................................................................................................................................................................TGAATACTATGACAACCTCCCTCACTACA....2911.001.00-----------------------1.00-------------------------
.......................................................................................................................................................................................................GGTGAGGAAAATAGCAGCTGATT............................231.000.00--------------------------------------------1.00----
.....................................................CTGCTGCTTTTTTTTTTTATTG...............................................................................................................................................................................221.000.00--------------------1.00----------------------------
.........................................................................................................................................................................................................................TGAATACTATGACAACCTCCCTCACT.......2611.001.00--------1.00----------------------------------------
.....................................................................................................................................................................TCATTTTTCATCTTGCTGAGTT...............................................................221.000.00----------------------------1.00--------------------
...................................................................................................................................................................ACTCATTTTTCATCTCATT....................................................................191.000.00--------------------1.00----------------------------
.....................................................CTGCTGCTTTTTTTTTTATTG................................................................................................................................................................................211.000.00--------------------------1.00----------------------
.........................................................................................................................................................................................................................TGAATACTATGACAACCTCCCCACT........251.000.00---------------------------------------1.00---------
..................................................................................................................................................................................................................TAGCAGCTGAATACTATGACA...................2111.001.00-----------------------------------------1.00-------
.............................................................................AGAGAGGAGGGAGGCAGGTCTCACGG...................................................................................................................................................261.000.00--1.00----------------------------------------------
...................................................TGCTGCTGCTTTTTTTTTTTTTTCCGG............................................................................................................................................................................271.000.00---1.00---------------------------------------------
.......TGAAATGTAGACTGCTT..................................................................................................................................................................................................................................1711.001.00--------------------------------------1.00----------
.............................................................................................................................................................................................................GAAAATAGCAGCTGAATA...........................1811.001.00------------------------------1.00------------------
.................................................................................................................................................................................................................ATAGCAGCTGAATACTATGAA....................211.000.00----------------------------------1.00--------------
.......................................................................................................................................................................................................GGTGAGGAAAATAGCAGCTG...............................2011.001.00-----------------------------1.00-------------------
...............................................................................................................................................................................................................AAATAGCAGCTGAATACTA........................1911.001.00-----------1.00-------------------------------------
..................................................CTGCTGCTGCTTTTTTTTTTTTTCGA..............................................................................................................................................................................261.000.00--1.00----------------------------------------------
..................................................................................................................................................................................................................TAGCAGCTGAATACTATGACAACCTCCC............2811.001.00--------1.00----------------------------------------
..................................................CTGCTGCTGCTTTTTTTCCT....................................................................................................................................................................................201.000.00-1.00-----------------------------------------------
..................................................CTGCTGCTGCTTTTTTTTTTTTTAAG..............................................................................................................................................................................261.000.00--1.00----------------------------------------------
.....................................................CTGCTGCTTTTTTTTTTTTTAAAG.............................................................................................................................................................................241.000.00---------------------1.00---------------------------
.................................................................................................................................................................................TTGCTGTATTTTTTCCCTTCTAG..................................................2311.001.00------------------------------------------1.00------
...........................GTTTAGAATTCCCACAGCTG...........................................................................................................................................................................................................2011.001.00----------------------------------------1.00--------
......................TTTTTGTTTAGAATTCCCACAGCTGCTGC.......................................................................................................................................................................................................2911.001.00----------1.00--------------------------------------
.........................................................................................................................................................................................................................TGAATACTATGACAACCTCCCTC..........2311.001.00--------1.00----------------------------------------
.......................................................GCTGCTTTTTTTTTTTCGAT...............................................................................................................................................................................201.000.00---------------------------------1.00---------------
.................................................................................................................................................................................TTGCTGTATTTTTTCCCTTCTAGA.................................................2411.001.00----------1.00--------------------------------------
................................................................................................................................................................................................................AATAGCAGCTGAATACTATGACAAAC................261.000.00--1.00----------------------------------------------
...................................................TGCTGCTGCTTTTTTTTTTTTTACAC.............................................................................................................................................................................261.000.00---1.00---------------------------------------------
......................................................................................................................................................................................................................AGCTGAATACTATGAGGA..................181.000.00---------------1.00---------------------------------
......................................................TGCTGCTTTTTTTTTTTTGGGA..............................................................................................................................................................................221.000.00---1.00---------------------------------------------
...........................................................CTTTTTTTTTTTTTTAAGAGGTAG.......................................................................................................................................................................241.000.00------------------1.00------------------------------
..........................................................................................................................................................................................................GAGGAAAATAGCAGCTGAATACTA........................2411.001.00--------------------------------1.00----------------
..................................................CTGCTGCTGCTTTTTTTTTTTCC.................................................................................................................................................................................231.000.00---1.00---------------------------------------------
...........................................................................................................................................................................................................AGGAAAATAGCAGCTGAATACTATGACAAC.................3011.001.00---------1.00---------------------------------------
......................................................................................................................................................................................................................................AACCTCCCTCACTACACT..181.000.00-----------------------------------------------1.00-
...............................................................................................................................................................................................................AAATAGCAGCTGAATACTG........................191.000.00-----------1.00-------------------------------------
...............AGACTGCTTTTTGTTTAGATCCC....................................................................................................................................................................................................................231.000.00--1.00----------------------------------------------
...................................................................................................................................................................................................................AGCAGCTGAATACTATGACAACCTC..............2511.001.00---------------------------1.00---------------------
.....................................................CTGCTGCTTTTTTTTTTTTTGT...............................................................................................................................................................................221.000.00--1.00----------------------------------------------
.....................................................CTGCTGCTTTTTTTTTTATTT................................................................................................................................................................................211.000.00------------------1.00------------------------------
................................................................................................................................................................................CTTGCTGTATTTTTTCCCTTCTAG..................................................2411.001.00--------------1.00----------------------------------
................................................TGCTGCTGCTGCTTTTTTTTTTGC..................................................................................................................................................................................241.000.00---1.00---------------------------------------------
..................................................CTGCTGCTGCTTTTTTTTTTTTCTTT..............................................................................................................................................................................261.000.00--1.00----------------------------------------------
........................................................................................................................................................................TTTTTCATCTTGCTGTATTTTCTCC.........................................................251.000.00--1.00----------------------------------------------
.........AAATGTAGACTGCTTTGTTT.............................................................................................................................................................................................................................201.000.00--1.00----------------------------------------------
.....................................................................................................................................................................................................................CAGCTGAATACTATGACAATCTC..............231.000.00------1.00------------------------------------------
...............................................................................................................CTCAGTGTTTGTGTCAACCATTCATCAGTCATCTTTGAAAGAACCTAGTAACACTCATTTTTCATCTTGCTGTA.................................................................7411.001.00------------------------1.00------------------------
........................................................................................................................................................................................................GTGAGGAAAATAGCAGCTGAATACTATGACAAC.................3311.001.00----------------1.00--------------------------------
.........................................................................................................................................................ACCTAGTAACACTCATTTTTCATCTTGCTGTATTTTTTCCCTTCTAG..................................................4711.001.00-------------------1.00-----------------------------
...........................................................................................................................................................................................................AGGAAAATAGCAGCTGAATACT.........................2211.001.00--------------1.00----------------------------------
..................................................................................GGAGGGAGGCAGGTCTGAAA....................................................................................................................................................201.000.00------------------------------------1.00------------
...................................................TGCTGCTGCTTTTTTTTTTTCTGA...............................................................................................................................................................................241.000.00---1.00---------------------------------------------
......................................................TGCTGCTTTTTTTTTTTTTTAATTGC..........................................................................................................................................................................261.000.00---1.00---------------------------------------------
..............................................................................................................................................................................................................AAAATAGCAGCTGAATAC..........................1811.001.00-------------------------1.00-----------------------
....................................................................................................................................TCATCAGTCATCTTTGAAAGAACCTAGTAACACTCATTTTTCATCTTGCTGTATTTTTTCCCTTCTAG..................................................6811.001.00-------------------1.00-----------------------------
...........................................................................................................................................................................................................AGGAAAATAGCAGCTGA..............................1750.600.60---------0.200.20-----------0.20--------------------------
.......................................................................................................................................................................ATTTTTCATCTTGCTGTAT................................................................1920.500.50-----------------------0.50-------------------------
..............................................................................................................................................................................................................AAAATAGCAGCTGAATA...........................1730.330.33----------------------0.33--------------------------
............................................................................GAGAGAGGAGGGAGGCAGG...........................................................................................................................................................1950.200.20------------------------------------------------0.20

Antisense strand
CTGCTGCTGAAATGTAGACTGCTTTTTGTTTAGAATTCCCACAGCTGCTGCTGCTGCTGCTTTTTTTTTTTTTTAAGAGAGAGGAGGGAGGCAGGTCTCATGGTTTCCCTTCTCAGTGTTTGTGTCAACCATTCATCAGTCATCTTTGAAAGAACCTAGTAACACTCATTTTTCATCTTGCTGTATTTTTTCCCTTCTAGGTGAGGAAAATAGCAGCTGAATACTATGACAACCTCCCTCACTACAATTC
......................................................((.((((...(((((((...((((..((((((((((((..........)))))))))))).(((..((.......))..)))......)))).)))))))...)))).))......................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343337SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
...........................GTTTAGAATTCCCACTCTG............................................................................................................................................................................................................ 192.000.00-------------------------------------------1.00--1.00--
.........................................................................................................................................................................................TTTTTTCCCTTCTAGGTC............................................... 181.000.00---------------1.00---------------------------------
......................................CCACAGCTGCTGCTGCCACC................................................................................................................................................................................................ 201.000.00-----------------1.00-------------------------------
......................................................................................GGAGGCAGGTCTCATACTT................................................................................................................................................. 191.000.00--1.00----------------------------------------------