ID: uc001hly.1_intron_30_0_chr1_220213612_r.5p
GENE: EPRS(1)
chr1:220219485-220219734-


(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(20)
CELL-LINE 		(6)
CERVIX 		(5)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
XRN.ip

Sense strand
GGAGATGGCGACGCTCTCTCTGACCGTGAATTCAGGAGACCCTCCGCTAGGTAAGGGGCCGAGACCAATGACCTGTGTGGGTTGCATCAGCCAGGGAGGGTGCAGGGCGTGGAAGGTCGCTGCGCCCCGGCTTTGCGCAGTGGTGGTCACCATCTGGGATGTTGGACCTGCCCCTCGCCCCAGAATTGTACGTGGAGGAGGCTCCGCACCCCTCGCCCCGTGTCCCCGGCAGGTGCATCTGCTCCTGAAG
.................................................................................................(((((((((((.......))).)))))))).((((..((......))))))......................................................................................................
..............................................................................................95.....................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		TAX577588(Rovira)
total RNA. (breast)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................GGCTTTGCGCAGTGGCAG........................................................................................................1811.000.00-6.003.00----1.001.00---------------------------------------------------
................................................................................................................................GGCTTTGCGCAGTGGCAGT.......................................................................................................198.000.00-1.003.00--------2.00---------------------1.00---1.00----------------------
...................................................................................................GTGCAGGGCGTGGAAGGT.....................................................................................................................................1817.007.005.00-------------1.00-1.00-------------------------------------------
................................................................................................................................GGCTTTGCGCAGTGGCA.........................................................................................................176.000.00-------1.002.00-----------------1.00--------1.00--------------1.00---------
.............................................................................................................................................................GATGTTGGACCTGCCCC............................................................................1716.006.006.00-----------------------------------------------------------
.............................................................................................................................................................GATGTTGGACCTGCCCCT...........................................................................1814.004.00---3.001.00-------------------------------------------------------
...........................................................................................................................................................GGGATGTTGGACCTGCTTGG...........................................................................202.000.00---------------2.00--------------------------------------------
...................................................................................................GTGCAGGGCGTGGAAGG......................................................................................................................................1712.002.00----2.00-------------------------------------------------------
.............................................................................................................TGGAAGGTCGCTGCGCCCCGGC.......................................................................................................................2212.002.00-------------------------1.00--------------1.00-------------------
......................ACCGTGAATTCAGGAGACCCTC..............................................................................................................................................................................................................2211.001.00-------------------------------------------------------1.00----
.....................GACCGTGAATTCAGGAGACCC................................................................................................................................................................................................................2111.001.00-------------------1.00----------------------------------------
...............................................................................................................................CGGCTTTGCGCAGTGGC..........................................................................................................171.000.00-------------------------------------------1.00----------------
......................ACCGTGAATTCAGGAGACCCTCC.............................................................................................................................................................................................................2311.001.00----------------------------1.00-------------------------------
.....TGGCGACGCTCTCTCTG....................................................................................................................................................................................................................................1711.001.00------------------------------1.00-----------------------------
........................................................................................................................................................................................ATTGTACGTGGAGGAGGC................................................1811.001.00-----------------------------1.00------------------------------
..........................TGAATTCAGGAGACCCTCCGCTAGGAGC....................................................................................................................................................................................................281.000.00-----------------------------------------------------1.00------
......GGCGACGCTCTCTCTGACCGAGAA............................................................................................................................................................................................................................241.000.00----------------------------------------------1.00-------------
.......................................................................................................................................................ATCTGGGATGTTGGACCTG................................................................................1911.001.00---------------------------------------------------1.00--------
..........................TGAATTCAGGAGACCCTCCGC...........................................................................................................................................................................................................2111.001.00-------------------------------------------------1.00----------
.......................................................................................................AGGGCGTGGAAGGTCGCTG................................................................................................................................1911.001.00----------------1.00-------------------------------------------
...................CTGACCGTGAATTCAGGAGAC..................................................................................................................................................................................................................2111.001.00----1.00-------------------------------------------------------
................................................................................................................................GGCTTTGCGCAGTGGCG.........................................................................................................171.000.00----------------------1.00-------------------------------------
..AGATGGCGACGCTCTCTCTGACCGCG..............................................................................................................................................................................................................................261.000.00-------------1.00----------------------------------------------
..........................................................................................................................................................................................................................CGTGTCCCCGGCAGGTGCATCTGCTCC.....2711.001.00----------------------------------1.00-------------------------
......................ACCGTGAATTCAGGAGAC..................................................................................................................................................................................................................1811.001.001.00-----------------------------------------------------------
.....TGGCGACGCTCTCTCTGAC..................................................................................................................................................................................................................................1911.001.00-------------------------------1.00----------------------------
.GAGATGGCGACGCTCTCTCTGAC..................................................................................................................................................................................................................................2311.001.00-----1.00------------------------------------------------------
.....TGGCGACGCTCTCTCTGA...................................................................................................................................................................................................................................1811.001.00---------1.00--------------------------------------------------
....................TGACCGTGAATTCAGGAGACCCT...............................................................................................................................................................................................................2311.001.00---------------------------------------------------------1.00--
......................ACCGTGAATTCAGGAGACCCTCCGCTAGGA......................................................................................................................................................................................................301.000.00----------1.00-------------------------------------------------
....................TGACCGTGAATTCAGGAGACCCTC..............................................................................................................................................................................................................2411.001.00---------------------------1.00--------------------------------
...........................................CCGCTAGGTAAGGGGCCG.............................................................................................................................................................................................1811.001.00---------------------1.00--------------------------------------
.....TGGCGACGCTCTCTCTGACCG................................................................................................................................................................................................................................2111.001.00----------1.00-------------------------------------------------
.....................................................AGGGGCCGAGACCAATGA...................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------
..............................................................................................GGAGGGTGCAGGGCGAGGA.........................................................................................................................................191.000.00------------1.00-----------------------------------------------
..............................................................................................................GGAAGGTCGCTGCGCCCAGG........................................................................................................................201.000.00----------------------------------------------------1.00-------
..................................................................................................GGTGCAGGGCGTGGAAGGTC....................................................................................................................................2011.001.00------------------1.00-----------------------------------------
...................CTGACCGTGAATTCAGGAGACC.................................................................................................................................................................................................................2211.001.00-------1.00----------------------------------------------------
..........................TGAATTCAGGAGACCCTC..............................................................................................................................................................................................................1811.001.00---------1.00--------------------------------------------------
................................................................................................................................GGCTTTGCGCAGTGGCAA........................................................................................................181.000.00-1.00----------------------------------------------------------
...................................................................................................GTGCAGGGCGTGGAAGGC.....................................................................................................................................1811.002.001.00-----------------------------------------------------------
..........ACGCTCTCTCTGACCGTG..............................................................................................................................................................................................................................1811.001.00--------------------------------------------------------1.00---
..AGATGGCGACGCTCTCTCT.....................................................................................................................................................................................................................................1911.001.00------------------------1.00-----------------------------------
....................................................AAGGGGCCGAGACCAATGA...................................................................................................................................................................................1911.001.00------1.00-----------------------------------------------------
..................TCTGACCGTGAATTCAGGAGA...................................................................................................................................................................................................................2111.001.00------------------------------------------------1.00-----------
......................................................................................................................................................CATCTGGGATGTTGGACCTG................................................................................2011.001.00--------------------------------1.00---------------------------
........................................................................................................................................................................................ATTGTACGTGGAGGAGGCCCCC............................................2211.001.00------------------------------------1.00-----------------------
.....TGGCGACGCTCTCTCTGAA..................................................................................................................................................................................................................................1911.001.00-----1.00------------------------------------------------------
.............................................................................................................................................................GATGTTGGACCTGCCC.............................................................................1611.001.00---1.00--------------------------------------------------------
.......................CCGTGAATTCAGGAGACCCTCCGCTAG........................................................................................................................................................................................................2711.001.00-----------------------1.00------------------------------------
.....TGGCGACGCTCTCTCTGC...................................................................................................................................................................................................................................1811.001.00------------------------------------------------------1.00-----
..............................................................................................GGAGGGTGCAGGGCGTTGA.........................................................................................................................................191.000.00------------1.00-----------------------------------------------
....................................................................................................TGCAGGGCGTGGAAGGTC....................................................................................................................................1811.001.00--------------1.00---------------------------------------------
.................CTCTGACCGTGAATTCAGGAGACCCTCCGCTAG........................................................................................................................................................................................................3311.001.00--------------------------------------------1.00---------------
...................CTGACCGTGAATTCAGGA.....................................................................................................................................................................................................................1811.001.00-----1.00------------------------------------------------------
.....................................................AGGGGCCGAGACCAATGACCGTG..............................................................................................................................................................................231.000.00---------------------------------------1.00--------------------
................................................................................................AGGGTGCAGGGCGTGGAATT......................................................................................................................................201.000.00------1.00-----------------------------------------------------
......................ACCGTGAATTCAGGAGACCC................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00------------------
...................................................................................................GTGCAGGGCGTGGAAGGTC....................................................................................................................................1911.001.00---------------------------------------------1.00--------------
..................TCTGACCGTGAATTCAGGAGACCCT...............................................................................................................................................................................................................2511.001.00--------------------------------------1.00---------------------
...............................TCAGGAGACCCTCCGCTAGG.......................................................................................................................................................................................................2011.001.00------------------------------------------1.00-----------------
..............................................................................................................................................................ATGTTGGACCTGCCC.............................................................................1570.140.14-----------------------------------------------------------0.14

Antisense strand
GGAGATGGCGACGCTCTCTCTGACCGTGAATTCAGGAGACCCTCCGCTAGGTAAGGGGCCGAGACCAATGACCTGTGTGGGTTGCATCAGCCAGGGAGGGTGCAGGGCGTGGAAGGTCGCTGCGCCCCGGCTTTGCGCAGTGGTGGTCACCATCTGGGATGTTGGACCTGCCCCTCGCCCCAGAATTGTACGTGGAGGAGGCTCCGCACCCCTCGCCCCGTGTCCCCGGCAGGTGCATCTGCTCCTGAAG
.................................................................................................(((((((((((.......))).)))))))).((((..((......))))))......................................................................................................
..............................................................................................95.....................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		TAX577588(Rovira)
total RNA. (breast)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................................................CACGGGGCGAGGGGTGC............................ 1716.006.006.00-----------------------------------------------------------
..........................................................................................................................CACTGCGCAAAGCCGGGGCG............................................................................................................ 2011.001.00-----------------------------------------------1.00------------
..........................................................................................................................................................................CCCCTCGCCCCAGAAGG............................................................... 171.000.00-------------1.00----------------------------------------------
.....................................................................................................................................................................................................................CGCCCCGTGTCCCCGCGGC.................. 191.000.00-----------------1.00------------------------------------------
...........................................................................................................................................................................................................CCGCACCCCTCGCCCCC.............................. 171.000.00----------------------------------------------------------1.00-