ID: uc001hku.1_intron_4_0_chr1_215814077_r.3p
GENE: USH2A(67)
chr1:215814027-215814276-


(2)
BRAIN 		(1)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(2)
LIVER 		(5)
OTHER 		(1)
SKIN

Sense strand
CTTTTCACCCCTGATACTGGTTGTTTCGTAATACTGAGGAAAAAGTGAAGGATTCTAGCAATGTTGGTTTTCTTTTTTTTTTTTTTTTTTGTTTGGATTGGTTCGGTTTGATTTTGCTCATATTTTTTTTTTTTAAAGTGCACACCTGCACTCCTTCAAAGAGGTTACCCTTTTTAGAACATACAACTTTCTCCCCACAGTGCCTCAGTACCGAGCCCCATTTTCGGTGGACAGCAATTTGTCTGTGGTG
.........................................................................................(((..(((..((((..((((...........................((((((....)))))).....(((((((....))))))).))))....))))...)))..)))...................................................
..........................................................59...........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR343334SRR037937(GSM510475)
293cand2. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM532930(GSM532930)
G702T. (cervix)		GSM532929(GSM532929)
G702N. (cervix)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR189785SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................TTGGTTTTCTTTTTTTTTTTGGC....................................................................................................................................................................2311.000.003.008.00-----------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTGGC..........................................................................................................................................................2510.000.0010.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTGGC..........................................................................................................................................................2610.000.009.001.00-----------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGGG........................................................................................................................................................267.000.006.00--1.00---------------------
..........................................................................TTTTTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................247.000.002.002.001.002.00---------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................266.000.005.00--1.00---------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTAAAC.................................................................................................................................................................266.000.003.002.001.00----------------------
.................................................................................................................................................................................AACATACAACTTTCTTCT.......................................................186.000.00------4.00-----2.00------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTGGC..........................................................................................................................................................275.000.004.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCC.................................................................................................................................................................255.000.004.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTTTCC............................................................................................................................................................305.000.004.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTGGC....................................................................................................................................................................224.000.001.003.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................254.000.004.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTGGC..................................................................................................................................................................244.000.003.001.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTGGCT...................................................................................................................................................................244.000.00-4.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTGGC...................................................................................................................................................................244.000.002.002.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTCC...............................................................................................................................................................274.000.004.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTTCCC............................................................................................................................................................304.000.004.00------------------------
............................................................................TTTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................223.000.003.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTA.....................................................................................................................................................................243.000.002.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTGGC.......................................................................................................................................................................193.000.002.001.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTAAT......................................................................................................................................................................213.000.00--3.00----------------------
................................................................TGGTTTTCTTTTTTTTTTTGGCT...................................................................................................................................................................233.000.00-3.00-----------------------
..............................................................................TTTTTTTTTTTTGTTTGGCG........................................................................................................................................................203.000.001.001.00--1.00--------------------
...............................................................TTGGTTTTCTTTTTTTTTTTAAAC...................................................................................................................................................................243.000.00-2.001.00----------------------
..........................................................................TTTTTTTTTTTTTTTTGTTTGGC.........................................................................................................................................................233.000.002.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTGCC................................................................................................................................................................263.000.003.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTGGC..................................................................................................................................................................253.000.002.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTGGCT.............................................................................................................................................................293.000.001.002.00-----------------------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTTGGC..........................................................................................................................................................283.000.001.002.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGG........................................................................................................................................................253.000.002.00--1.00---------------------
.............................................................................TTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................213.000.001.00---2.00--------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGCG.........................................................................................................................................................272.000.001.00-------1.00----------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTAGGG..........................................................................................................................................................292.000.002.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTG......................................................................................................................................................................212.000.00-2.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTAAA...............................................................................................................................................................282.000.00-2.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTGGCT..................................................................................................................................................................252.000.00-2.00-----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTGGGG.........................................................................................................................................................272.000.002.00------------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTAAG.........................................................................................................................................................262.000.00---1.001.00--------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTAAC...................................................................................................................................................................262.000.001.001.00-----------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTGGCT.........................................................................................................................................................282.000.00-2.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTAAC.................................................................................................................................................................262.000.001.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTGGCT...............................................................................................................................................................272.000.002.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGCA........................................................................................................................................................252.000.00---2.00---------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTCTCC............................................................................................................................................................302.000.002.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTAAAC...............................................................................................................................................................282.000.002.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTAAAC..................................................................................................................................................................252.000.002.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTAC...................................................................................................................................................................232.000.002.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGAC...............................................................................................................................................................272.000.001.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTAAAC...............................................................................................................................................................272.000.002.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTGGCT................................................................................................................................................................262.000.002.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................232.000.001.00--1.00---------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTGGCT.........................................................................................................................................................272.000.001.001.00-----------------------
................................................................TGGTTTTCTTTTTTTTTCCC......................................................................................................................................................................202.000.002.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGCC........................................................................................................................................................232.000.002.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTAGCC..................................................................................................................................................................241.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTCGG........................................................................................................................................................281.000.001.00------------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGAAGG......................................................................................................................................................281.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGTTGT......................................................................................................................................................251.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTAAGC.................................................................................................................................................................251.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTAAC................................................................................................................................................................271.000.00-1.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTGGCT.....................................................................................................................................................................221.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTAAAC..................................................................................................................................................................241.000.001.00------------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTTTTCC........................................................................................................................................................291.000.001.00------------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGCGCC.......................................................................................................................................................271.000.00-1.00-----------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTGGC.........................................................................................................................................................261.000.00-1.00-----------------------
..............................................................................TTTTTTTTTTTTGTTTGGAGC.......................................................................................................................................................211.000.001.00------------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTTGGCT........................................................................................................................................................291.000.00-1.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGACC......................................................................................................................................................271.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTGTTC.........................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTTGGC............................................................................................................................................................301.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGGCGG......................................................................................................................................................251.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTGCC.............................................................................................................................................................291.000.001.00------------------------
..........................................................................TTTTTTTTTTTTTTTTGTTTGGTGC.......................................................................................................................................................251.000.001.00------------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGCGGG.......................................................................................................................................................271.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTGCC...................................................................................................................................................................241.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGTG........................................................................................................................................................251.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTCAT...........................................................................................................................................................281.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTTTTGCT........................................................................................................................................................311.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGGTC..............................................................................................................................................................281.000.001.00------------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGTGGA......................................................................................................................................................281.000.001.00------------------------
..........................................................................TTTTTTTTTTTTTTTTGTTTGGCT........................................................................................................................................................241.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTGGCC...............................................................................................................................................................271.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTGGC.................................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGGCT..............................................................................................................................................................281.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTTAAC.............................................................................................................................................................301.000.00-1.00-----------------------
.....................................................................................................................TCATATTTTTTTTTTTTATTAT...............................................................................................................221.000.00---1.00---------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGTTT......................................................................................................................................................271.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGC........................................................................................................................................................251.000.00-1.00-----------------------
......................................................................................................................CATATTTTTTTTTTTTAATTG...............................................................................................................211.000.00----1.00--------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTGGCT.................................................................................................................................................................261.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTAAC..............................................................................................................................................................291.000.001.00------------------------
..................................................................GTTTTCTTTTTTTTTTTTTTTCTCG...............................................................................................................................................................251.000.001.00------------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTTCG.........................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTGGT.................................................................................................................................................................251.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGCG........................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTGGGA.............................................................................................................................................................291.000.001.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTCT.....................................................................................................................................................................241.000.00-1.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGCTCG.......................................................................................................................................................261.000.00-1.00-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTTTTTA..............................................................................................................................................................311.000.001.00------------------------
............................................................................TTTTTTTTTTTTTTGTTTGGCCG.......................................................................................................................................................231.000.00-1.00-----------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTATTG..........................................................................................................................................................291.000.00--1.00----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTAACT...............................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTAAGG..................................................................................................................................................................241.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTAAA...................................................................................................................................................................241.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTGGCT......................................................................................................................................................................211.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTCTCC...................................................................................................................................................................231.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTGAC....................................................................................................................................................................221.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTGGCT.................................................................................................................................................................251.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTTTTTA............................................................................................................................................................311.000.001.00------------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGTTA........................................................................................................................................................261.000.00-1.00-----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGAGC........................................................................................................................................................281.000.00-1.00-----------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGCTTG...........................................................................................................................................................281.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGCAG......................................................................................................................................................271.000.00-1.00-----------------------
.................................................................GGTTTTCTTTTTTTTTTTTTTTGGGC...............................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGGGT..............................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTGGCC...................................................................................................................................................................231.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTGGAC...................................................................................................................................................................231.000.00-1.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGCCCT......................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTGTTG...............................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTAGTC...............................................................................................................................................................271.000.001.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTCTC.....................................................................................................................................................................241.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................................................301.000.001.00------------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTGCTT.........................................................................................................................................................281.000.00-1.00-----------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGGACT......................................................................................................................................................281.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTCCCC..........................................................................................................................................................261.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGGTT.......................................................................................................................................................241.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCCCT...............................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTGTA.................................................................................................................................................................251.000.001.00------------------------
.....................................................................................................................TCATATTTTTTTTTTTACTG.................................................................................................................201.000.00----1.00--------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTTGGG..........................................................................................................................................................291.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTAAG.........................................................................................................................................................271.000.00--1.00----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTAAC.................................................................................................................................................................251.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGACG......................................................................................................................................................271.000.001.00------------------------
..........................................................................TTTTTTTTTTTTTTTTGTTTGGAGCTG.....................................................................................................................................................271.000.00---1.00---------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTTTGCC............................................................................................................................................................311.000.001.00------------------------
.....................................................................................................................TCATATTTTTTTTTTTCGGC.................................................................................................................201.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTTTGTCG........................................................................................................................................................311.000.00---1.00---------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTGCC..............................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGCC...............................................................................................................................................................271.000.001.00------------------------
..................................................................GTTTTCTTTTTTTTTTTTTTTTTTGGC.............................................................................................................................................................271.000.001.00------------------------
.................................................................GGTTTTCTTTTTTTTTTTGGC....................................................................................................................................................................211.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTCCCC............................................................................................................................................................301.000.001.00------------------------
.................................................................GGTTTTCTTTTTTTTTTTGCC....................................................................................................................................................................211.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTC..........................................................................................................................................................261.000.00-1.00-----------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGGGTT......................................................................................................................................................251.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTGGGA...................................................................................................................................................................231.000.00-1.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGCGGT.......................................................................................................................................................261.000.001.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTAAAC..................................................................................................................................................................271.000.00-1.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTGG.....................................................................................................................................................................221.000.00-1.00-----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTCC.........................................................................................................................................................271.000.001.00------------------------
................................................................................TTTTTTTTTTGTTTGGATTTGG....................................................................................................................................................221.000.00-1.00-----------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGCA........................................................................................................................................................231.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCGCC...............................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTCGGC.............................................................................................................................................................291.000.001.00------------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTGGCT.........................................................................................................................................................261.000.001.00------------------------
................................................................................TTTTTTTTTTGTTTGGATAGCT....................................................................................................................................................221.000.00---------------1.00---------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTTTGG..........................................................................................................................................................2811.001.001.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTCTTA....................................................................................................................................................................251.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTCTG.................................................................................................................................................................251.000.00-1.00-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTC......................................................................................................................................................................231.000.00-1.00-----------------------
.................................................................GGTTTTCTTTTTTTTTTTTTTTTTCAA..............................................................................................................................................................271.000.00-1.00-----------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTGGGT.........................................................................................................................................................281.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTGGC................................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCAAC...............................................................................................................................................................271.000.001.00------------------------
..............................................................................TTTTTTTTTTTTGTTTGGCTGG......................................................................................................................................................221.000.00-1.00-----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTAAG..........................................................................................................................................................261.000.00----1.00--------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTAACC................................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTGC.....................................................................................................................................................................211.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTGGCT......................................................................................................................................................................201.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTCTC.................................................................................................................................................................251.000.00-1.00-----------------------
..............................................................................TTTTTTTTTTTTGTTTGCGG........................................................................................................................................................201.000.00--------1.00----------------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTCTCA..........................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTCTG.....................................................................................................................................................................211.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTCGGC...............................................................................................................................................................281.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTTTGG..........................................................................................................................................................2911.001.00--1.00----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTTAT........................................................................................................................................................281.000.00--1.00----------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGCAGT.......................................................................................................................................................271.000.001.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTCCTC.......................................................................................................................................................................221.000.001.00------------------------
..............................................................GTTGGTTTTCTTTTTTTTTTTTTTTTTCCC..............................................................................................................................................................301.000.00-1.00-----------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGATCCC.....................................................................................................................................................281.000.00-1.00-----------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTTCTC..........................................................................................................................................................291.000.00-1.00-----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGTC........................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTGGA................................................................................................................................................................261.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTCTCG.............................................................................................................................................................291.000.00--1.00----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTCGG...........................................................................................................................................................251.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGGC...............................................................................................................................................................271.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTCGGC.................................................................................................................................................................261.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTGCC.......................................................................................................................................................................191.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTCGG...........................................................................................................................................................281.000.00-1.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTAAAC.............................................................................................................................................................301.000.001.00------------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGCCT.......................................................................................................................................................271.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTGGT..................................................................................................................................................................251.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTGAGG...................................................................................................................................................................231.000.00-1.00-----------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGCA........................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTGCGC...................................................................................................................................................................231.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTCTT..............................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTTGAC............................................................................................................................................................301.000.001.00------------------------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTTGCC..........................................................................................................................................................281.000.00-1.00-----------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTCTGG..........................................................................................................................................................271.000.00-1.00-----------------------
.....................................................................................................................TCATATTTTTTTTTTTCTGG.................................................................................................................201.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTGTTGTTG.........................................................................................................................................................331.000.00-1.00-----------------------
.................................................................GGTTTTCTTTTTTTTTTTATC....................................................................................................................................................................211.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGAGG......................................................................................................................................................271.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTTAG........................................................................................................................................................281.000.00--1.00----------------------
............................................................................TTTTTTTTTTTTTTGTTTGCGGC.......................................................................................................................................................231.000.001.00------------------------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTTTTAG.........................................................................................................................................................291.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGC.........................................................................................................................................................241.000.00-1.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTAAC...............................................................................................................................................................281.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTAAC...............................................................................................................................................................271.000.001.00------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTTTTA...............................................................................................................................................................301.000.001.00------------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTTTTC.........................................................................................................................................................281.000.001.00------------------------
.............................................................................TTTTTTTTTTTTTGTTTGCGG........................................................................................................................................................211.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTAAA..................................................................................................................................................................251.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTAAA...................................................................................................................................................................231.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGGCC..............................................................................................................................................................281.000.001.00------------------------
............................................................................TTTTTTTTTTTTTTGTTTGCATG.......................................................................................................................................................231.000.001.00------------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTGTAG........................................................................................................................................................271.000.00--------1.00----------------
..........................................................................TTTTTTTTTTTTTTTTGTTTGGCC........................................................................................................................................................241.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGCCTC......................................................................................................................................................301.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTCTC........................................................................................................................................................281.000.00-1.00-----------------------
.....................................................................................................................TCATATTTTTTTTTTTTATT.................................................................................................................201.000.00----1.00--------------------
................................................................TGGTTTTCTTTTTTTTTTCCC.....................................................................................................................................................................211.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTAT.........................................................................................................................................................271.000.001.00------------------------
..............................................................................TTTTTTTTTTTTGTTTGGGGG.......................................................................................................................................................211.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTTCCTG.........................................................................................................................................................301.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCGGC...............................................................................................................................................................271.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGGGT.......................................................................................................................................................241.000.00-1.00-----------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTGTC..........................................................................................................................................................251.000.001.00------------------------
...................................................................TTTTCTTTTTTTTTTTTTTTTTTGTCCGA..........................................................................................................................................................291.000.00----1.00--------------------
.............................................................................TTTTTTTTTTTTTGTTTGGCTG.......................................................................................................................................................221.000.001.00------------------------
.....................................................................TTCTTTTTTTTTTTTTTTTTTGTTGGCG.........................................................................................................................................................281.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTATTC........................................................................................................................................................281.000.001.00------------------------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTCTGC..........................................................................................................................................................281.000.00-1.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTGTTT...................................................................................................................................................................241.000.00-1.00-----------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTTCC.........................................................................................................................................................261.000.00----1.00--------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGGG...............................................................................................................................................................271.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTAC..........................................................................................................................................................261.000.00-1.00-----------------------
....................................................................................TTTTTTGTTTGGATTGGTTCGAAC..............................................................................................................................................241.000.00-------------1.00-----------
..................................................................GTTTTCTTTTTTTTTTTTTTTTTTGGGG............................................................................................................................................................281.000.001.00------------------------
......................................................................................................................CATATTTTTTTTTTTATTT.................................................................................................................191.000.00---1.00---------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTGTG........................................................................................................................................................281.000.00-1.00-----------------------
............................................................................TTTTTTTTTTTTTTGTTTGGGC........................................................................................................................................................221.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGCT........................................................................................................................................................231.000.00-1.00-----------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTTCAC........................................................................................................................................................271.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTGC................................................................................................................................................................261.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTGGC.......................................................................................................................................................................201.000.001.00------------------------
....................................................................TTTCTTTTTTTTTTTTTTTTTTGTTGGCT.........................................................................................................................................................291.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCCT................................................................................................................................................................261.000.001.00------------------------
..................................................................GTTTTCTTTTTTTTTTTTTTTTTTGTAGT...........................................................................................................................................................291.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTTA.........................................................................................................................................................271.000.00--1.00----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTCCG.................................................................................................................................................................251.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTCTCC.............................................................................................................................................................291.000.001.00------------------------
.........................................................................................................................................GTGCACACCTGCACTATTG..............................................................................................191.000.00------------------1.00------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGC.........................................................................................................................................................271.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTAAAA.............................................................................................................................................................291.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGG.........................................................................................................................................................271.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGGG.......................................................................................................................................................261.000.001.00------------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGGA........................................................................................................................................................251.000.001.00------------------------
............................................................................TTTTTTTTTTTTTTGTTTGGTCGT......................................................................................................................................................241.000.001.00------------------------
.........................................................................................................................ATTTTTTTTTTTTAAAGTGCACATCT.......................................................................................................261.000.00-------------1.00-----------
...............................................................TTGGTTTTCTTTTTTTTTGGC......................................................................................................................................................................211.000.00-1.00-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTAAAC...................................................................................................................................................................261.000.001.00------------------------
.......................................................................CTTTTTTTTTTTTTTTTTTGTTTTGGG........................................................................................................................................................271.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTGTA........................................................................................................................................................281.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTGGC.............................................................................................................................................................291.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGGGC.......................................................................................................................................................241.000.00-1.00-----------------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGCATT......................................................................................................................................................281.000.00--------1.00----------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGGCTCC......................................................................................................................................................281.000.00-1.00-----------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTTCT........................................................................................................................................................281.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTGGT......................................................................................................................................................................211.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTCCCC...............................................................................................................................................................271.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGCC........................................................................................................................................................281.000.001.00------------------------
...........................................................................TTTTTTTTTTTTTTTGTTTGGGTTA......................................................................................................................................................251.000.00-1.00-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTTAAAT............................................................................................................................................................311.000.00-1.00-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTGGC.....................................................................................................................................................................241.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTGG...............................................................................................................................................................271.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTGGCTG.......................................................................................................................................................291.000.001.00------------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTCCAG..................................................................................................................................................................251.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTTTTTGGTTA...........................................................................................................................................................311.000.00-1.00-----------------------
................................................................TGGTTTTCTTTTTTTTTTTTTTGGTA................................................................................................................................................................261.000.001.00------------------------
................................................................TGGTTTTCTTTTTTTTTTTTTGAGG.................................................................................................................................................................251.000.00-1.00-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTAA....................................................................................................................................................................251.000.001.00------------------------
......................................................................TCTTTTTTTTTTTTTTTTTTGTTTTATT........................................................................................................................................................281.000.00--1.00----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTT..................................................................................................................................................................2770.570.570.290.29-----------------------
......................................................................................................................CATATTTTTTTTTTTTAAAG................................................................................................................2020.500.50-----------------------0.50-
.................................................................................................TTGGTTCGGTTTGATT.........................................................................................................................................1620.500.500.50------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTA..................................................................................................................................................................2770.430.290.290.14-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTTAAC...............................................................................................................................................................3070.430.570.43------------------------
..............................................................................TTTTTTTTTTTTGTTTGGAT........................................................................................................................................................2060.330.33--0.33----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTAAAC...............................................................................................................................................................3070.290.290.29------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTT...................................................................................................................................................................2670.290.29-0.29-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTA....................................................................................................................................................................2590.220.22-0.22-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTT.....................................................................................................................................................................2490.220.22-0.22-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTAAAC.................................................................................................................................................................2890.220.220.110.11-----------------------
...............................................................TTGGTTTTCTTTTTTTTTTTTTTTTTTG...............................................................................................................................................................2850.200.200.20------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTGAC................................................................................................................................................................2970.140.29-0.14-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTTTAAAC..............................................................................................................................................................3170.140.570.14------------------------
.........................................................GCAATGTTGGTTTTC..................................................................................................................................................................................1580.120.12--0.12----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTT....................................................................................................................................................................2590.110.11-0.11-----------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTAAAC................................................................................................................................................................2990.110.110.11------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTAAC..................................................................................................................................................................2790.110.220.11------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTAACT.................................................................................................................................................................2890.110.220.11------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTAAA..................................................................................................................................................................2790.110.220.11------------------------
.............................................................TGTTGGTTTTCTTTTTTTTTTTTTTAAC.................................................................................................................................................................2890.110.11-0.11-----------------------

Antisense strand
CTTTTCACCCCTGATACTGGTTGTTTCGTAATACTGAGGAAAAAGTGAAGGATTCTAGCAATGTTGGTTTTCTTTTTTTTTTTTTTTTTTGTTTGGATTGGTTCGGTTTGATTTTGCTCATATTTTTTTTTTTTAAAGTGCACACCTGCACTCCTTCAAAGAGGTTACCCTTTTTAGAACATACAACTTTCTCCCCACAGTGCCTCAGTACCGAGCCCCATTTTCGGTGGACAGCAATTTGTCTGTGGTG
.........................................................................................(((..(((..((((..((((...........................((((((....)))))).....(((((((....))))))).))))....))))...)))..)))...................................................
..........................................................59...........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR343334SRR037937(GSM510475)
293cand2. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM532930(GSM532930)
G702T. (cervix)		GSM532929(GSM532929)
G702N. (cervix)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR189785SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................TTTTTTTTTTTTTTTGTTTTGT......................................................................................................................................................... 228.000.00-----8.00-------------------
...........................................................................TTTTTTTTTTTTTTTGTTTTAA......................................................................................................................................................... 222.000.00--------------1.00-1.00--------
..........................................................................................................................TTTTTTTTTTTTAAAGTGCAG........................................................................................................... 211.000.00---------1.00---------------
.............................................................................................................................TTTTTTTTTAAAGTGCCAG.......................................................................................................... 191.000.00---------1.00---------------
...........................................................................TTTTTTTTTTTTTTTGTTTTCT......................................................................................................................................................... 221.000.00-------1.00-----------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTCATA........................................................................................................................................................ 261.000.00----------1.00--------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTCA.......................................................................................................................................................... 231.000.00-------1.00-----------------
........................................................................TTTTTTTTTTTTTTTTTTGTTCG........................................................................................................................................................... 231.000.00-------1.00-----------------
........................................................................AAACAAAAAAAAAAAAAAAAAA............................................................................................................................................................ 2201.001.00-----------------1.00-------
........................................................................TTTTTTTTTTTTTTTTTTGTTTGCACA....................................................................................................................................................... 271.000.00-----------1.00-------------
........................................................................TTTTTTTTTTTTTTTTTTGTTTCAAC........................................................................................................................................................ 261.000.00----------1.00--------------
................................................................................................................TTTGCTCATATTTTTTTTTTTTTA.................................................................................................................. 241.000.00----------------------1.00--
......................................................................................................................................................................................ACAACTTTCTCCCCAGAGT................................................. 191.000.00--------------------1.00----
.............................................................................................................................................ACACCTGCACTCCTTCACTTT........................................................................................ 211.000.00---------------------1.00---
....................................................................................TTTTTTGTTTGGATTCTG.................................................................................................................................................... 181.000.00-------------------1.00-----
..................................TGAGGAAAAAGTGAAGCTTG.................................................................................................................................................................................................... 201.000.00------1.00------------------
.........................................................................TTTTTTTTTTTTTTTTTGTTTGGCGA....................................................................................................................................................... 261.000.00-----------1.00-------------
.........................................................................TTTTTTTTTTTTTTTTTGTTCCGT......................................................................................................................................................... 241.000.00-------1.00-----------------
.......................................................................................................................................................................CCCTTTTTAGAACATCA.................................................................. 171.000.001.00------------------------
...............................................................................................................TTTTGCTCATATTTTTTTTTTA..................................................................................................................... 221.000.00--------------1.00----------
.........................................................................TTTTTTTTTTTTTTTTTGTTTAA.......................................................................................................................................................... 231.000.00-------1.00-----------------
................................................................................................................................................TTGAAGGAGTGCAGG........................................................................................... 1550.200.20------------------------0.20
...........................................................................................................................................AGGAGTGCAGGTGTGC............................................................................................... 1680.120.120.12------------------------