ID: uc001hku.1_intron_26_0_chr1_216017839_r.3p
GENE: USH2A(45)
chr1:216017789-216018038-


(4)
B-CELL 		(4)
BRAIN 		(7)
BREAST 		(6)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(6)
LIVER 		(2)
OTHER 		(16)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTTACCACCAATTCTTATGGTTTCTAACTGAGAGTATAATAAGCCAATTTACAGAGGACTACAGACTGTGATAACTTCATCAGCGAAAAGCAGATAAGCGAGGAACCCTTTGCTAAACCTAAATACTAATCTGCATTTAGCTTAACATGTGCTTTTTCAGAGACAGCTGGAGTTTATTCAGTTTCTTCCTTTAATTCTAGAGCCTCAGGGCATGCTTCCTCCAGAGGTTGTCATCATCAACAGTACAGCT
....................................................((((.((........((((.....)))).(((.(((.((((((.(((((((....)))))))..............)))))).))).)))......)).))))...............................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)		SRR343336SRR553576(SRX182782)
source: Testis. (testes)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................TACAGACTGTGATAACTGAAG..........................................................................................................................................................................21118.002.004.00--1.00----1.001.00-1.00---1.00----1.00--1.00---------1.001.001.00----1.00--1.00--1.001.00-
...........................................................TACAGACTGTGATAACTGAA...........................................................................................................................................................................2018.002.00--1.00---2.00---1.00--1.00---------------1.001.00-----------1.00------
...........................................................TACAGACTGTGATAACTGA............................................................................................................................................................................1918.002.00---1.00-----1.00-------1.00-------1.00-----1.001.00---1.00-------1.00----
...........................................................TACAGACTGTGATAACTGAAA..........................................................................................................................................................................2115.002.00--1.00---------1.00------1.00------1.00--------------1.00-------
................................................................................................................................................ACATGTGCTTTTTCACACG.......................................................................................193.000.00-3.00-----------------------------------------------
...........................................................TACAGACTGTGATAACTGAAT..........................................................................................................................................................................2113.002.00--------1.00------------1.00-----------------------1.00---
...........................................................TACAGACTGTGATAACT..............................................................................................................................................................................1712.002.00--------------1.00-------1.00--------------------------
...........................................................TACAGACTGTGATAACTGACC..........................................................................................................................................................................2112.002.00----2.00--------------------------------------------
...........................................................TACAGACTGTGATAACTG.............................................................................................................................................................................1811.002.00------------------------1.00------------------------
...........................................................TACAGACTGTGATAACTGAG...........................................................................................................................................................................2011.002.00--------------1.00----------------------------------
..........................................................CTACAGACTGTGATAACTGAAG..........................................................................................................................................................................221.000.00------------1.00------------------------------------
..........................................................CTACAGACTGTGATATTG..............................................................................................................................................................................181.000.00-1.00-----------------------------------------------
...........................................................TACAGACTGTGATAACTTAAAA.........................................................................................................................................................................221.000.00-------------------------------------1.00-----------
...........................................................TACAGACTGTGATAACCGA............................................................................................................................................................................191.000.00-------------1.00-----------------------------------
..................................................ACAGAGGACTACAGACTCTG....................................................................................................................................................................................201.000.00-----1.00-------------------------------------------
...........................................................TACAGACTGTGATAACTGT............................................................................................................................................................................1911.002.00----------1.00--------------------------------------
...........................................................TACAGACTGTGATAACTGACT..........................................................................................................................................................................2111.002.00--1.00----------------------------------------------
....................................................................................................................................................GTGCTTTTTCAGAGAAG.....................................................................................171.000.00----------------1.00--------------------------------
............................................CAATTTACAGAGGACTACAGACTCTG....................................................................................................................................................................................261.000.00---------------------------------------1.00---------

Antisense strand
TTTACCACCAATTCTTATGGTTTCTAACTGAGAGTATAATAAGCCAATTTACAGAGGACTACAGACTGTGATAACTTCATCAGCGAAAAGCAGATAAGCGAGGAACCCTTTGCTAAACCTAAATACTAATCTGCATTTAGCTTAACATGTGCTTTTTCAGAGACAGCTGGAGTTTATTCAGTTTCTTCCTTTAATTCTAGAGCCTCAGGGCATGCTTCCTCCAGAGGTTGTCATCATCAACAGTACAGCT
....................................................((((.((........((((.....)))).(((.(((.((((((.(((((((....)))))))..............)))))).))).)))......)).))))...............................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)		SRR343336SRR553576(SRX182782)
source: Testis. (testes)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................TTTTTCAGAGACAGCTGGAA.............................................................................. 202.000.00-------1.00------------------------------1.00----------
........................................................................................................................................................TTTTTCAGAGACAGCTGGAAA............................................................................. 211.000.00-------1.00-----------------------------------------
...............................GAGTATAATAAGCCACTTC........................................................................................................................................................................................................ 191.000.00---------------------------1.00---------------------
..................................................CAGTCTGTAGTCCTCTGT...................................................................................................................................................................................... 1811.001.00-----------1.00-------------------------------------
...................................................TATCACAGTCTGTAGTCCTCTG................................................................................................................................................................................. 2211.001.00-----1.00-------------------------------------------
..................................................................................................................................................................................................................CATGCTTCCTCCAGAACTG..................... 191.000.00------------------1.00------------------------------
.........................................................................................................................................TAGCTTAACATGTGCGTGT.............................................................................................. 191.000.00----------------------------1.00--------------------
...................................................GTCTGTAGTCCTCTG........................................................................................................................................................................................ 1550.200.20------------------------------------------------0.20