| (3) B-CELL | (1) BRAIN | (7) BREAST | (14) CELL-LINE | (1) CERVIX | (4) HELA | (1) LIVER | (1) OTHER | (1) RRP40.ip | (10) SKIN | (1) XRN.ip |
| TGCGAAGACACAACATAAATATAGGAATTACAAATGTTGATGTTAAAGCTGTAAGTAATATTTTTATGATTATACTGTTGAGAAGTATGTATAGAATAAATGTGAAACCATATTTTTTTATTTAGCTATTTTTCTCCCGAGTCAACTGTTGATCTGTTATAATAGGATATGCCAGATGCTATACATTTTTAATCTTCTGATTGTTTTTATAGATACCAGCTGACAGTCCCACAGACCAAGAACCAAAAACGGTTATGTTGTC ............................................................................................................((((((((.(((((((((.....(((....)))......)))))......)))).)))))))).......(((((......(((((....)))))....))))).................................................. ...........................................................................................................108.....................................................................................................212................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | SRR191589(GSM715699) 69genomic small RNA (size selected RNA from t. (breast) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR191427(GSM715537) 153genomic small RNA (size selected RNA from . (breast) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR191586(GSM715696) 197genomic small RNA (size selected RNA from . (breast) | SRR040028(GSM532913) G026N. (cervix) | GSM359175(GSM359175) hela_5_pct. (hela) | SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin) | SRR191434(GSM715544) 171genomic small RNA (size selected RNA from . (breast) | SRR191611(GSM715721) 57genomic small RNA (size selected RNA from t. (breast) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR330871(SRX091709) tissue: skin psoriatic involveddisease state:. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | TAX577738(Rovira) total RNA. (breast) | SRR033714(GSM497059) Burkitt Lymphoma (BL134). (B cell) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | GSM359203(GSM359203) hepg2_untreated_b. (cell line) | TAX577745(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR029124(GSM416753) HeLa. (hela) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATAGA................................................. | 21 | 1 | 34.00 | 34.00 | 24.00 | 4.00 | - | - | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................................................ATCTTCTGATTGTTTTTATAGA................................................. | 22 | 1 | 15.00 | 15.00 | 8.00 | 2.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................ATCTTCTGATTGTTTTTATAG.................................................. | 21 | 1 | 12.00 | 12.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATAG.................................................. | 20 | 1 | 9.00 | 9.00 | 3.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATAGT................................................. | 21 | 1 | 6.00 | 9.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................CTCCCGAGTCAACTGTTGATCTGTTATAATAGGATATGCCAGATGCTATACATTTTTAATCTTCTGATTGTTTTTATAGT................................................. | 80 | 6.00 | 0.00 | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................CCCGAGTCAACTGTTGATCTGTTATAATAGGATATGCCAGATGCTATACATTTTTAATCTTCTGATTGTTTTTATA................................................... | 76 | 1 | 4.00 | 4.00 | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATAGAA................................................ | 22 | 1 | 3.00 | 34.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................ATCTTCTGATTGTTTTTATAGC................................................. | 22 | 1 | 2.00 | 12.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATAAGA................................................ | 22 | 1 | 2.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TTATAGATACCAGCTGACAGTCCCAC.............................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TTTTTTTATTTAGCTATATG.................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ......................................................................................................................................................................ATATGCCAGATGCTATACATTTTTAA...................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....AGACACAACATAAATATAGGAATTACAAATG.................................................................................................................................................................................................................................. | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................ACTGTTGAGAAGTATGTATAGAATAAATAA............................................................................................................................................................... | 30 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................ATCTTCTGATTGTTTTTATATT................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ....................................................AAGTAATATTTTTATGAACT.............................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................ATCTTCTGATTGTTTTTATATA................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................CCACAGACCAAGAACTCTG............... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACCATATTTTTTTATCG........................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................CCATATTTTTTTATTTTTTT....................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATATA................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................TAATCTTCTGATTGTTTTTATAG.................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTATA................................................... | 19 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................CTCCCGAGTCAACTGTTGATCTGTTATAATAGGATATGCCAGATGCTATACATTTTTAATCTTCTGATTGTTTTTATGGT................................................. | 80 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................AATCTTCTGATTGTTTTTATAGA................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................TATACTGTTGAGAAGTATGTA........................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......ACACAACATAAATATAGGA............................................................................................................................................................................................................................................ | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTAT.................................................... | 18 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - |
| ................................................................................................................................................................................................TCTTCTGATTGTTTTTA..................................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - |
| ....................................................................................................................................................................................................CTGATTGTTTTTATAG.................................................. | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| TGCGAAGACACAACATAAATATAGGAATTACAAATGTTGATGTTAAAGCTGTAAGTAATATTTTTATGATTATACTGTTGAGAAGTATGTATAGAATAAATGTGAAACCATATTTTTTTATTTAGCTATTTTTCTCCCGAGTCAACTGTTGATCTGTTATAATAGGATATGCCAGATGCTATACATTTTTAATCTTCTGATTGTTTTTATAGATACCAGCTGACAGTCCCACAGACCAAGAACCAAAAACGGTTATGTTGTC ............................................................................................................((((((((.(((((((((.....(((....)))......)))))......)))).)))))))).......(((((......(((((....)))))....))))).................................................. ...........................................................................................................108.....................................................................................................212................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | SRR191589(GSM715699) 69genomic small RNA (size selected RNA from t. (breast) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR191427(GSM715537) 153genomic small RNA (size selected RNA from . (breast) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR191586(GSM715696) 197genomic small RNA (size selected RNA from . (breast) | SRR040028(GSM532913) G026N. (cervix) | GSM359175(GSM359175) hela_5_pct. (hela) | SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin) | SRR191434(GSM715544) 171genomic small RNA (size selected RNA from . (breast) | SRR191611(GSM715721) 57genomic small RNA (size selected RNA from t. (breast) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR330871(SRX091709) tissue: skin psoriatic involveddisease state:. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | TAX577738(Rovira) total RNA. (breast) | SRR033714(GSM497059) Burkitt Lymphoma (BL134). (B cell) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | GSM359203(GSM359203) hepg2_untreated_b. (cell line) | TAX577745(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR029124(GSM416753) HeLa. (hela) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..CGAAGACACAACATATTAA................................................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................AGCTGACAGTCCCACACTG.......................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................TTTAATCTTCTGATTGGC......................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |