ID: uc001hfp.3_intron_6_0_chr1_207510164_f.3p
GENE: (7)
chr1:207510474-207510723+


(2)
B-CELL 		(4)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(2)
HELA 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
XRN.ip

Sense strand
AAAGACCCCTTCTGCAGCTCAGAATCCCATGATGACAAATGCTTCTGCTACACAGGCCACACTAACAGCCCAAAAATTCACCACAGCAAAAGTTGCATTTACGCAGAGTCCTTCAGCAGCACGTAAGTCCACTAATGTACATTCCCCAGTGACTAATGGTCTCAAGAGTACACAAAGATTCCCTTCTGCTCATATTACAGCAACACGGAGTACACCTGTTTCCAGGACAACCAAGCATTTTCATGAAACA
..............................................................................................................(((.((..((.(((.(((.((((..............))))))).))))))).)))....................................................................................
............................................................................................................109..............................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
.................................................................................................................CAGCAGCACGTAAGTATTG......................................................................................................................1954.000.0052.00-1.00----------------1.00--------
.........................................................................................................................................................................................................................GTTTCCAGGACAACCAAGC..............1918.008.00-7.00--1.00-----------------------
.................................................................................................................CAGCAGCACGTAAGTACTG......................................................................................................................197.000.004.00-3.00-------------------------
.................................................................................................................CAGCAGCACGTAAGTTTTG......................................................................................................................196.000.006.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTGTTG......................................................................................................................195.000.004.00----1.00----------------------
.................................................................................................................CAGCAGCACGTAAGTAGTG......................................................................................................................194.000.004.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTATGG......................................................................................................................194.000.004.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTATT.......................................................................................................................183.000.003.00---------------------------
...............................................................................................................................................................................................................................AGGACAACCAAGCATTTTC........1913.003.00-------2.00-1.00------------------
.......................................................................................................................................................ACTAATGGTCTCAAGAGTA................................................................................1912.002.00---2.00------------------------
.................................................................................................................CAGCAGCACGTAAGTAATG......................................................................................................................192.000.00--2.00-------------------------
..............................................................................................................................................................................................................................CAGGACAACCAAGCATTTTCATGA....2412.002.00----2.00-----------------------
.................................................................................................................CAGCAGCACGTAAGTATAG......................................................................................................................192.000.002.00---------------------------
..........................................................................................................................GTAAGTCCACTAATGTAC..............................................................................................................1812.002.00------2.00---------------------
.................................................................................................................CAGCAGCACGTAAGTATTT......................................................................................................................192.000.002.00---------------------------
..................................................................................................................AGCAGCACGTAAGTCTTG......................................................................................................................181.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTCATG......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTAAT.......................................................................................................................181.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTCCTG......................................................................................................................191.000.001.00---------------------------
........................TCCCATGATGACAAACTGT...............................................................................................................................................................................................................191.000.00--------------1.00-------------
.................................................................................................................CAGCAGCACGTAAGTATAT......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTGTTC......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTTG........................................................................................................................171.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTTTT.......................................................................................................................181.000.001.00---------------------------
...................................................................................................................................................................................................................ACACCTGTTTCCAGGACAACCAAGCAT............2711.001.001.00---------------------------
..........................................................................................................................................................................................................................TTTCCAGGACAACCAAGCATT...........2111.001.00-----------------------1.00----
.................................................................................................................CAGCAGCACGTAAGTATAC......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTCGTG......................................................................................................................191.000.00-----1.00----------------------
.................................................................................................................CAGCAGCACGTAAGTATCA......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTACGG......................................................................................................................191.000.001.00---------------------------
.........................................................................................................................................................................................................................GTTTCCAGGACAACCAAGCA.............2011.001.00----1.00-----------------------
.........................................................................................................................................................................................................................GTTTCCAGGACAACCAAGCATTTTCA.......2611.001.00----------1.00-----------------
.................................................................................................................CAGCAGCACGTAAGTCTTG......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTCG........................................................................................................................171.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTG.........................................................................................................................161.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTACAG......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTTC........................................................................................................................171.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTCGTA......................................................................................................................191.000.001.00---------------------------
.................................................................................................................CAGCAGCACGTAAGTCTTC......................................................................................................................191.000.00-----1.00----------------------
.................................................................................................................................................................................................ATTACAGCAACACGGAGTA......................................1911.001.00--------------------1.00-------
.................................................................................................................CAGCAGCACGTAAGTCTTGA.....................................................................................................................201.000.00-------------1.00--------------
............................................................................................................................................................................................................ACGGAGTACACCTGTTTCCAGGACAACCA.................2911.001.00----------------------1.00-----
...........................................................................................................................................................................................................................TTCCAGGACAACCAAGCATTTTCAT......2511.001.00---------------------1.00------
..............................................................................................................................................................................................................................CAGGACAACCAAGCATTTTCA.......2111.001.00------------1.00---------------
.................................................................................................................CAGCAGCACGTAAGTGTAG......................................................................................................................191.000.001.00---------------------------
...........................CATGATGACAAATGCTGAGG...........................................................................................................................................................................................................201.000.00------------------1.00---------
...........................................................................................................................................CATTCCCCAGTGACTAATGG...........................................................................................2011.001.00--------------------------1.00-
.................................................................................................................CAGCAGCACGTAAGTATTA......................................................................................................................191.000.001.00---------------------------
............................................................................................................................................................................................................................TCCAGGACAACCAAGCA.............1720.500.50---------------------------0.50

Antisense strand
AAAGACCCCTTCTGCAGCTCAGAATCCCATGATGACAAATGCTTCTGCTACACAGGCCACACTAACAGCCCAAAAATTCACCACAGCAAAAGTTGCATTTACGCAGAGTCCTTCAGCAGCACGTAAGTCCACTAATGTACATTCCCCAGTGACTAATGGTCTCAAGAGTACACAAAGATTCCCTTCTGCTCATATTACAGCAACACGGAGTACACCTGTTTCCAGGACAACCAAGCATTTTCATGAAACA
..............................................................................................................(((.((..((.(((.(((.((((..............))))))).))))))).)))....................................................................................
............................................................................................................109..............................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
...........................................................................................................................TAAGTCCACTAATGTTGT............................................................................................................. 183.000.00---3.00------------------------
............................................................................................AAGGACTCTGCGTAAATGCAA......................................................................................................................................... 2111.001.00-----------1.00----------------
..................................GTGTAGCAGAAGCATTTGT..................................................................................................................................................................................................... 1911.001.00--------1.00-------------------
.............................................................................................................................................................................................................................CCAGGACAACCAAGCAGCTG......... 201.000.00-----------------1.00----------
.............................................................................TCACCACAGCAAAAGTGG........................................................................................................................................................... 181.000.00----------------1.00-----------
.CTGAGCTGCAGAAGGGGTCTT.................................................................................................................................................................................................................................... 2111.001.00------------------------1.00---
................................................................................................................AGTGGACTTACGTGCTGCTGA..................................................................................................................... 2111.001.00---------------1.00------------
........................................................CCACACTAACAGCCCAGG................................................................................................................................................................................ 181.000.00-------------------------1.00--