ID: uc001hfe.1_intron_0_0_chr1_207223069_r.3p
GENE: YOD1(1)
chr1:207223019-207223268-


(1)
AGO2.ip 		(1)
B-CELL 		(7)
CELL-LINE 		(1)
HEART 		(8)
HELA 		(2)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
TTTTTTGTTCTTTTTTCATCTTTATGAAAATTCAGTGAACAAAGATTCTTACTGGTAACTTACTTGCAAAACTGTATTCTCCTTAGTAACCCCAGTTTATGCTTTAACTCCTTCAGTTTGTAATTTACAGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAGGTGACATGCTGATCATTGAAGAAGACCAAACCAGGCCCAGAAGTTCACCT
............................................................................................................................................(((((((((((.....(((((((.....))))))))))))...)))))).............................................................
......................................................................................................................................135......................................................192........................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189782DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783
................................................................................................................................AGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................72113.0013.004.008.00---1.00--------------------------
....................................................................................................................................TTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................68112.0012.008.004.00------------------------------
.................................................................................................................................GACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................7119.009.009.00-------------------------------
...................................................................................................................................CTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAT..................................................698.000.008.00-------------------------------
...............................................................................................................................CAGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................7317.007.00-6.00---1.00--------------------------
....................................................................................................................................TTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAGT.................................................6915.0012.005.00-------------------------------
.............................................................................................................................TACAGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................7515.005.00-4.00-------1.00----------------------
....................................................................................................................................TTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAGTT................................................7014.0012.004.00-------------------------------
.........................................................................................................................................TAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................6313.003.00-3.00------------------------------
.........CTTTTTTCATCTTTATTTTG.............................................................................................................................................................................................................................202.000.00----2.00---------------------------
...................................................................................................................................................................................................................................AAACCAGGCCCAGAAGTTC....1912.002.00--2.00-----------------------------
......................................................................................................................TGTAATTTACAGACTTGGCTAGAGAACACT......................................................................................................3012.002.00-------2.00------------------------
...............................................................................................................................................................................................................GCTGATCATTGAAGAAGA.........................1812.002.00------2.00-------------------------
....................................................................................................................................................CGGTTTCTTCTGTAATTTCTTTGCAGATCGG.......................................................................3112.002.00------------2.00-------------------
..........................................................................................................................................................................GCAGATCGGGATTTGTTT..............................................................1812.002.00--1.00--------------1.00--------------
................................................................................................................................AGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAATAG..................................................721.000.001.00-------------------------------
................................................................................................................................................................................CGGGATTTGTTTTATTTTTAACAG..................................................2411.001.00-----------------------1.00--------
.............................................................ACTTGCAAAACTGTATTCTCCTTAGTAAC................................................................................................................................................................2911.001.00-----------1.00--------------------
...........................................................................................................................................GAGAACACTCGGTTTTTA.............................................................................................181.000.00-------------------------1.00------
..............................................................................................................................................................................ATCGGGATTTGTTTTATTTTTAACAG..................................................2611.001.00---------------1.00----------------
..............................................................................................................................ACAGACTTGGCTAGAGAACACTCGGT..................................................................................................2611.001.00---------------------1.00----------
........................................................................................................................................................................TTGCAGATCGGGATTTGTTTTATTTTT.......................................................2711.001.00--1.00-----------------------------
...................................................................................................................................CTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAA.....................................................6611.001.00---1.00----------------------------
.................................................................................................................................GACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACA...................................................7011.001.00---------1.00----------------------
................................................................................................................................................................................CGGGATTTGTTTTATTTTT.......................................................1911.001.00--1.00-----------------------------
.................................................................................................................................GACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAAC....................................................6911.001.00---1.00----------------------------
.....................................................................................................................................................................TCTTTGCAGATCGGGATTTGTT...............................................................2211.001.00-------------------1.00------------
.........................................................................................................................................................................................................TGACATGCTGATCATTGAAGAAGACCAAAC...................3011.001.00--------------------------1.00-----
.......................................................................................................................................................................TTTGCAGATCGGGATT...................................................................1611.001.00----------------1.00---------------
.............................................................................................................................TACAGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAA.....................................................7211.001.00---1.00----------------------------
......................................................................................................................................................GTTTCTTCTGTAATTTCTTTGCAGATCGT.......................................................................291.000.00--------1.00-----------------------
............................................................................................................................................................................................................CATGCTGATCATTGAAGAAG..........................2011.001.00----------------------1.00---------
........................................................................................................................................................................TTGCAGATCGGGATTT..................................................................1611.001.00----------1.00---------------------
.....................................................................................................................................TGGCTAGAGAACACTCGGTTTCTTCT...........................................................................................2611.001.00----------1.00---------------------
.................................................................................................................................GACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAA.....................................................6811.001.00---1.00----------------------------
......................................................................................................................................................GTTTCTTCTGTAATTTCTTTGCAGATCGG.......................................................................2911.001.00--------1.00-----------------------
............................................................................................................................TTACAGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAG..................................................7611.001.00-1.00------------------------------
.............................................................................................................................TACAGACTTGGCTAGAGAACACTCGG...................................................................................................2611.001.00---------------------------1.00----
.............................................................................................................................TACAGACTTGGCTAGAGAACACTCGGT..................................................................................................2711.001.00--------------1.00-----------------
..............................................................................................................................................................TGTAATTTCTTTGCAGATCGGGATTTG.................................................................2711.001.00----------------------------1.00---
..............................................................................................................................................................................ATCGGGATTTGTTTTATTTTTAACAGG.................................................2711.001.00------------------1.00-------------
....................................................................................................................................................CGGTTTCTTCTGTAATTTCTTTGCAGATCGGG......................................................................3211.001.00------------------------1.00-------
........................................................................................................................................................................TTGCAGATCGGGATTTGTTTTATTTTTA......................................................2811.001.00--1.00-----------------------------
........................................................................................................................................................................................................................................AGGCCCAGAAGTTCACC.1740.250.25------------------------------0.25-
..................................................................................................................AGTTTGTAATTTACAG........................................................................................................................1690.110.11-------------------------------0.11

Antisense strand
TTTTTTGTTCTTTTTTCATCTTTATGAAAATTCAGTGAACAAAGATTCTTACTGGTAACTTACTTGCAAAACTGTATTCTCCTTAGTAACCCCAGTTTATGCTTTAACTCCTTCAGTTTGTAATTTACAGACTTGGCTAGAGAACACTCGGTTTCTTCTGTAATTTCTTTGCAGATCGGGATTTGTTTTATTTTTAACAGGTGACATGCTGATCATTGAAGAAGACCAAACCAGGCCCAGAAGTTCACCT
............................................................................................................................................(((((((((((.....(((((((.....))))))))))))...)))))).............................................................
......................................................................................................................................135......................................................192........................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189782DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783
...........................................................TTACTTGCAAAACTGTACAG........................................................................................................................................................................... 201.000.00----1.00---------------------------
..................................................................................................................................................CTCGGTTTCTTCTGTATA...................................................................................... 181.000.00-----------------------------1.00--
.........................................................................................................................................................................................................GGTCTTCTTCAATGATCAGCATGTCA....................... 2611.001.00-------------1.00------------------
.......................................................................................................................................................TTTCTTCTGTAATTTCTTACCA............................................................................. 221.000.00-----------1.00--------------------