ID: uc001hau.2_intron_5_0_chr1_204199715_r.5p
GENE: (17)
chr1:204210303-204210552-


(1)
B-CELL 		(7)
BRAIN 		(11)
BREAST 		(5)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(4)
UTERUS

Sense strand
CAGTGGTAAGAAGGAATGCCAGTGGGCTCACCAATGGACTCTCCTCCCAGGTGGGTACCTCTGCAAGCTCATGCAGGCCTGAGCTGGGCTGCGAGCCCAGGGGCCTGTGTGTGTACCTACTCATCTCCCTCTGCTGTTCAAGAAATTCAGGGCTGGAGAGGAAGGTGGAACACGTGAGAGGAGGGGCAAGAGCCCCACTGGAGGAGGAGCTCTCCTGCAGGGAGATGTGTCAGGGGATGAGGAAGCTATG
...................................................................................................................................((((.(((......((((....)))).......(((...))).......))).))))..............................................................
...................................................................................................................................132..........................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189787SRR189786SRR189783SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577739(Rovira)
total RNA. (breast)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR040030(GSM532915)
G013N. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................TTCAAGAAATTCAGGATAG...............................................................................................1991.000.0047.008.004.002.002.002.00--2.00-2.001.00-2.002.001.002.00-1.001.001.00-1.001.001.001.00---1.00--------1.001.00--1.001.00-1.001.00-----
........................................................................................................................................TTCAAGAAATTCAGGAAAG...............................................................................................197.000.005.00--1.00---1.00--------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGACAG...............................................................................................196.000.001.003.00-1.00-1.00----------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGATAT...............................................................................................194.000.001.00---1.00-----------------------1.00--------1.00--------------
........................................................................................................................................TTCAAGAAATTCAGGATTG...............................................................................................192.000.001.00----------------1.00----------------------------------
........................................................................................................................................TTCAAGAAATTCAGGATTT...............................................................................................192.000.00---------------1.00-----------1.00------------------------
.......................................................................................................................................................................................................................................AGGGGATGAGGAAGCTAT.1812.002.00---------2.00------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGCG.................................................................................................171.000.00--1.00-------------------------------------------------
.....................................................................................................................................................................TGGAACACGTGAGAGGAGGGGCAA.............................................................2411.001.00-----------------1.00----------------------------------
........................................................................................................................................TTCAAGAAATTCAGGTTAG...............................................................................................191.000.001.00---------------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGTTTG...............................................................................................191.000.001.00---------------------------------------------------
.................................ATGGACTCTCCTCCCAGCAGG....................................................................................................................................................................................................211.000.00----------------------------------1.00-----------------
........................................................................................................................................TTCAAGAAATTCAGGACAA...............................................................................................191.000.001.00---------------------------------------------------
................................................................................................CCAGGGGCCTGTGTGTTT........................................................................................................................................181.000.00-----------1.00----------------------------------------
..................................................................................................................................................................AGGTGGAACACGTGAGCAC.....................................................................191.000.00-------1.00--------------------------------------------
....GGTAAGAAGGAATGCCAGTGGGCTCA............................................................................................................................................................................................................................2611.001.00----------------------------------------1.00-----------
................................AATGGACTCTCCTCCCAGGAA.....................................................................................................................................................................................................211.000.00---------------------1.00------------------------------
........................................................................................................................................TTCAAGAAATTCAGGTTAT...............................................................................................191.000.001.00---------------------------------------------------
................................AATGGACTCTCCTCCCAGGAAC....................................................................................................................................................................................................221.000.00------------1.00---------------------------------------
................................AATGGACTCTCCTCCCAGC.......................................................................................................................................................................................................191.000.00------1.00---------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGGCAG...............................................................................................191.000.00---1.00------------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGACTG...............................................................................................191.000.00-1.00--------------------------------------------------
...........................................................................................................................................AAGAAATTCAGGGCTGGAGAGGAAGGCGG..................................................................................291.000.00-------------------------------1.00--------------------
..............................................................................CTGAGCTGGGCTGCGAGGGCG.......................................................................................................................................................211.000.00---------------------------------1.00------------------
........................................................................................................................................TTCAAGAAATTCAGGTTAA...............................................................................................191.000.00--------------------------1.00-------------------------
..............................................................................................................................................................AGGAAGGTGGAACACGTGAGAGGAGGAG................................................................281.000.00------------1.00---------------------------------------
..............................................................................CTGAGCTGGGCTGCGAGGGC........................................................................................................................................................201.000.00-----------------------------------------------1.00----
........................................................................................................................................TTCAAGAAATTCAGGATGT...............................................................................................191.000.00------------------------------1.00---------------------
.........GAAGGAATGCCAGTGGGCTCAC...........................................................................................................................................................................................................................2211.001.00------1.00---------------------------------------------
...................................................................................................................................................................................................CACTGGAGGAGGAGCGGGC....................................191.000.00-----------------------------------1.00----------------
........................................................................................................................................TTCAAGAAATTCAGGTTG................................................................................................181.000.00---1.00------------------------------------------------
......................................................................................................................................................................................................................................CAGGGGATGAGGAAGCTA..1811.001.00-----------------------------------------1.00----------
......................TGGGCTCACCAATGGACTCTCCTCCCAG........................................................................................................................................................................................................2811.001.00------------------------------------1.00---------------
........AGAAGGAATGCCAGTGGGCTCAC...........................................................................................................................................................................................................................2311.001.00------1.00---------------------------------------------
...............................CAATGGACTCTCCTCCCATGAG.....................................................................................................................................................................................................221.000.00-1.00--------------------------------------------------
........................................................................................................................................TTCAAGAAATTCAGGCTAG...............................................................................................191.000.00--1.00-------------------------------------------------
......................................................................................................................................................................................................................................CAGGGGATGAGGAAGC....1680.250.25-------------------------------------------------0.25--
........................................................ACCTCTGCAAGCTCATG.................................................................................................................................................................................1750.200.20--------------------------------------------------0.20-

Antisense strand
CAGTGGTAAGAAGGAATGCCAGTGGGCTCACCAATGGACTCTCCTCCCAGGTGGGTACCTCTGCAAGCTCATGCAGGCCTGAGCTGGGCTGCGAGCCCAGGGGCCTGTGTGTGTACCTACTCATCTCCCTCTGCTGTTCAAGAAATTCAGGGCTGGAGAGGAAGGTGGAACACGTGAGAGGAGGGGCAAGAGCCCCACTGGAGGAGGAGCTCTCCTGCAGGGAGATGTGTCAGGGGATGAGGAAGCTATG
...................................................................................................................................((((.(((......((((....)))).......(((...))).......))).))))..............................................................
...................................................................................................................................132..........................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189787SRR189786SRR189783SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577739(Rovira)
total RNA. (breast)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR040030(GSM532915)
G013N. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................TCCCTCTGCTGTTCACGG........................................................................................................... 181.000.00--------------------------------1.00-------------------
.......................................................................................................................................GTTCAAGAAATTCAGTCTG................................................................................................ 191.000.00--------------------------------------------1.00-------
.................................................................................................................GAGGGAGATGAGTAGGTA....................................................................................................................... 1820.500.50------------------------------------------------0.50---
.........................................................................................................................................................................................CAGTGGGGCTCTTGC.................................................. 1580.120.12---------------------------------------------------0.12