ID: uc001hau.2_intron_19_0_chr1_204237441_r.5p
GENE: (3)
chr1:204242554-204242803-


(1)
AGO1.ip
(1)
B-CELL
(4)
BREAST
(3)
CELL-LINE
(2)
CERVIX
(3)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
CCAACCACAACATGGTGTCCGAGGTCCCTCCAGAGCGGCCCAGCGTCCGGGTAAGTCCAGCCCTCAAGGCAAGCTGTTGGGCTGGAAACGTCTTCAGTGCATGTTTAGTGGGATCTCTGGGAATCCTAGGAAATTGTAGCCTGTCCAGCTATTTCTGCAGGCTCCAAGAGTAGGCAAGGTGACCCAGGAAGAGAGTGGAGAGTAGGAAGGGAAGAGGGCTCAGATCAGAACCTCGTAGAAGACCAACATC
............................................................(((((...((((((...((.((((((......)))))).)).)))).))....((.(((((...(((......(((.((((((..(((......))))))))).))).........)))...)))))))...))).))....................................................
...........................................................60..................................................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................CAAGGCAAGCTGTTGGTTCA......................................................................................................................................................................2055.000.0041.0014.00---------------
...............................................................TCAAGGCAAGCTGTTGGTTCA......................................................................................................................................................................2111.000.007.004.00---------------
.................................................................AAGGCAAGCTGTTGGTTCA......................................................................................................................................................................199.000.008.001.00---------------
.................................................................AAGGCAAGCTGTTGGTTC.......................................................................................................................................................................183.000.003.00----------------
................................................................CAAGGCAAGCTGTTGGT.........................................................................................................................................................................172.000.002.00----------------
..................................................................................................................CTCTGGGAATCCTAGG........................................................................................................................1612.002.00--2.00--------------
................................................................CAAGGCAAGCTGTTGGTTC.......................................................................................................................................................................192.000.002.00----------------
.................................................................AAGGCAAGCTGTTGGTTTA......................................................................................................................................................................191.000.001.00----------------
................................................................CAAGGCAAGCTGTTGGTTTT......................................................................................................................................................................201.000.001.00----------------
.................................................................AAGGCAAGCTGTTGGTT........................................................................................................................................................................171.000.001.00----------------
..........................................................................TGTTGGGCTGGAAACGTCTTTA..........................................................................................................................................................221.000.00----1.00------------
................................................................CAAGGCAAGCTGTTGGGTCA......................................................................................................................................................................201.000.001.00----------------
...........ATGGTGTCCGAGGTCCCT.............................................................................................................................................................................................................................1811.001.00-------------1.00---
................................................................CAAGGCAAGCTGTTGGTTTA......................................................................................................................................................................201.000.001.00----------------
...............................................................TCAAGGCAAGCTGTTGTTCA.......................................................................................................................................................................201.000.00-1.00---------------
...............................AGAGCGGCCCAGCGTCCGG........................................................................................................................................................................................................1911.001.00-----1.00-----------
................................................................................................................................................................................AGGTGACCCAGGAAGAGAGTGGAGAGCAGG............................................301.000.00----------1.00------
.........................................................................................................................................................................................AGGAAGAGAGTGGAGCTGA..............................................191.000.00--------------1.00--
..........................................................................................................................................................................................................TAGGAAGGGAAGAGGGC...............................1750.400.40---------------0.200.20

Antisense strand
CCAACCACAACATGGTGTCCGAGGTCCCTCCAGAGCGGCCCAGCGTCCGGGTAAGTCCAGCCCTCAAGGCAAGCTGTTGGGCTGGAAACGTCTTCAGTGCATGTTTAGTGGGATCTCTGGGAATCCTAGGAAATTGTAGCCTGTCCAGCTATTTCTGCAGGCTCCAAGAGTAGGCAAGGTGACCCAGGAAGAGAGTGGAGAGTAGGAAGGGAAGAGGGCTCAGATCAGAACCTCGTAGAAGACCAACATC
............................................................(((((...((((((...((.((((((......)))))).)).)))).))....((.(((((...(((......(((.((((((..(((......))))))))).))).........)))...)))))))...))).))....................................................
...........................................................60..................................................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................CTCTGGGAATCCTAGGTAA..................................................................................................................... 1912.000.00---2.00-------------
......................................................GTCCAGCCCTCAAGGCAAGGGT.............................................................................................................................................................................. 221.000.00---------1.00-------
.........................CCCTCCAGAGCGGCCCTCT.............................................................................................................................................................................................................. 191.000.00-------1.00---------
.......................GTCCCTCCAGAGCGGCCCAGTGT............................................................................................................................................................................................................ 231.000.00------------1.00----
...............................................................................................AGTGCATGTTTAGTGAAG......................................................................................................................................... 181.000.00--------1.00--------
.........................................................................................................................................................................................................................GCTCAGATCAGAACCTCTG.............. 191.000.00-----------1.00-----
....................................................................................................................................................................................................GGAGAGTAGGAAGGGAACGGC................................. 211.000.00------1.00----------