ID: uc001had.2_intron_2_0_chr1_203770757_f.3p
GENE: (3)
chr1:203771580-203771829+


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BREAST 		(17)
CELL-LINE 		(4)
HEART 		(1)
KIDNEY 		(8)
LIVER 		(7)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTTAGTATATATCTGTATGTATATTATATACATAAAACACTATATTTTTACATACAAGTATGCTTTTATTATACAGATAATAAAGATGGGGGAAGGTTTCTGTTTTTTTCTTAATAGGTGAAGAAATCTTGAAGACCAGAAATTGGATCTTACTGAAAAACTGATGTTTTTTTGTTTTTTTTTTAAATTATATTGTTCAGCTATGGAAGATGGAGTTTTTTTTCATGATCCTTTAACTCTCAAGTTCATC
.................................................................................(((((..((((((.(((...(((((((.......((((......))))..((((((((...)))).))))...))))))).))).))))))..))))).......................................................................
.................................................................................82...........................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR343335SRR343334SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR343336SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAA...............................................................24150.0050.0047.001.002.00------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCC...........................................................................................................................................2613.000.00-4.009.00------------------------------------------------------
...................................................................................................................................................................................................................................ATCCTTTAACTCTCAAG......1719.009.00----8.00---------1.00------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTGTTCAG..................................................2417.007.007.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCTTAACAG.....................................................................................................................................327.000.007.00--------------------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTGTTCAGCTATG.............................................2917.007.007.00--------------------------------------------------------
.........................................................................................................................................................................TTTTGTTTTTTTTTTAAATTATATTGTTCAG..................................................3116.006.006.00--------------------------------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTGTTCAG..................................................2516.006.006.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTCTTC............................................................................................................................................276.000.00-5.001.00------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTCAAA...............................................................246.000.006.00--------------------------------------------------------
.................................................................................................................................................................................TTTTTTTAAATTATATTGTTCAG..................................................2316.006.005.00---------1.00----------------------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTGTTCAGCTATG.............................................3016.006.006.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTTCC...........................................................................................................................................286.000.00-3.003.00------------------------------------------------------
........................................................................................................................................................................TTTTTGTTTTTTTTTTAAATTATATTGTTCAG..................................................3215.005.005.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCTTAATAG.....................................................................................................................................3215.005.005.00--------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTCC............................................................................................................................................245.000.00-3.002.00------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTTTTCTC..........................................................................................................................................305.000.00-4.001.00------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTATATT........................................................2814.004.003.00-------------1.00------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTCTC............................................................................................................................................244.000.00-4.00-------------------------------------------------------
.................................AAAACACTATATTTTTACATACAAG................................................................................................................................................................................................2514.004.00--------1.003.00-----------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTCT.............................................................................................................................................234.000.00--4.00------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTTCC...........................................................................................................................................2514.001.00-2.002.00------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTATATC........................................................284.000.004.00--------------------------------------------------------
.......................................................................................................................................................................TTTTTTGTTTTTTTTTTAAATTATATTGTCCAG..................................................334.000.004.00--------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTCTT...............................................................................................................................................2514.002.00-4.00-------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTACATT........................................................284.000.004.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTTCTC..........................................................................................................................................2914.001.00-4.00-------------------------------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTGTTCAGCTATGG............................................3113.003.002.00---1.00----------------------------------------------------
.......................................................................................................................................................................TTTTTTGTTTTTTTTTTAAATTATATTGTTCAG..................................................3313.003.003.00--------------------------------------------------------
...................................................................................................................AGGTGAAGAAATCTTGAAGACCAGAAATCGG........................................................................................................313.000.00-3.00-------------------------------------------------------
.................................................................................................................................................................TGATGTTTTTTTGTTTTTTTTTTAAACT.............................................................283.000.00--3.00------------------------------------------------------
...................................................................................................................................................................................................................................ATCCTTTAACTCTCAAGTT....1913.003.00-------3.00-------------------------------------------------
..................................................................................................................TAGGTGAAGAAATCTTGAAGACCAGAAA............................................................................................................2813.003.00-3.00-------------------------------------------------------
.............................ACATAAAACACTATATTTTTACATACAAG................................................................................................................................................................................................2913.003.00------------2.00-----------------1.00--------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTT...............................................................................................................................................2413.003.00-------3.00-------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTTCCT..........................................................................................................................................293.000.00-1.002.00------------------------------------------------------
..............................................................................................................................................................................TTTTTTTTTTAAATTATATTGTTCAG..................................................2613.003.003.00--------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTCTTC............................................................................................................................................283.000.00-1.002.00------------------------------------------------------
......................................ACTATATTTTTACATACAAG................................................................................................................................................................................................2013.003.00------3.00--------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTCC............................................................................................................................................253.000.00-2.001.00------------------------------------------------------
.............................................................................................AGGTTTCTGTTTTTTTCTTAATAGGTGAAG...............................................................................................................................3013.003.00-1.00-----------2.00-------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTCCT...........................................................................................................................................283.000.00-2.001.00------------------------------------------------------
.................................................................................AAAGATGGGGGAAGGTTTCT.....................................................................................................................................................2013.003.00-------------------------1.00--1.00------1.00---------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTTTTCC...........................................................................................................................................2913.001.00--3.00------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTTCTC............................................................................................................................................283.000.00-3.00-------------------------------------------------------
......................................................................................................TTTTTTTCTTAATAGGTGAAG...............................................................................................................................2122.502.50---2.50-----------------------------------------------------
..............................................................................................................................................................................TTTTTTTTTTAAATTATATTG.......................................................2122.502.50----------2.00---0.50------------------------------------------
....................................................................................................................................................................................TTTTAAATTATATTGTTCAGCTATGGAAGA........................................3012.002.002.00--------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTCTTC............................................................................................................................................242.000.00-2.00-------------------------------------------------------
................................................................................................................AATAGGTGAAGAAATCTTGAAGAC..................................................................................................................2412.002.00-----------------2.00---------------------------------------
....................................................................................GATGGGGGAAGGTTTCTGTTTTTCTCT...........................................................................................................................................272.000.00-2.00-------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCTTAACA......................................................................................................................................312.000.002.00--------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTTCCT..........................................................................................................................................2612.001.00-2.00-------------------------------------------------------
...................................................................................................................................................................................TTTTTAAATTATATTGTTCAGCTATGGAAG.........................................3012.002.002.00--------------------------------------------------------
...........TCTGTATGTATATTATTTT............................................................................................................................................................................................................................192.000.00---2.00-----------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAATTATATT........................................................3112.002.002.00--------------------------------------------------------
.........................................................................................GGGAAGGTTTCTGTTTTTTTCTTAATAGGTG..................................................................................................................................3112.002.002.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTC.............................................................................................................................................262.000.00-2.00-------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTGGC...............................................................242.000.00--2.00------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTCCT...........................................................................................................................................252.000.00-2.00-------------------------------------------------------
.............................................................................................................................................................................................ATATTGTTCAGCTATGGAAGACGG.....................................242.000.00-2.00-------------------------------------------------------
..........................................................................AGATAATAAAGATGGGGGAAGGTTTCTG....................................................................................................................................................2812.002.00-------------------2.00-------------------------------------
..................................................................................................................................................................................TTTTTTAAATTATATTGTTCAGCTATGGAAG.........................................3112.002.002.00--------------------------------------------------------
................................................................TTTATTATACAGATAATAAAG.....................................................................................................................................................................2112.002.00--------1.001.00-----------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTACATC........................................................282.000.002.00--------------------------------------------------------
...............................ATAAAACACTATATTTTTACATAC...................................................................................................................................................................................................2412.002.002.00--------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTTCTC..........................................................................................................................................262.000.00-2.00-------------------------------------------------------
.................................................................................................................................................................................TTTTTTTAAATTATATTGTTCAGCTATG.............................................2812.002.002.00--------------------------------------------------------
..................................................................................................................................................................................TTTTTTAAATTATATTGTTCAGCTATG.............................................2712.002.002.00--------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTT..................................................................................................................................................2212.002.00---------------------------1.00---------------1.00-------------
...................................AACACTATATTTTTACATACAAGA...............................................................................................................................................................................................242.000.00------------2.00--------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTCTCT...............................................................................................................................................252.000.00-2.00-------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTTTCCT...........................................................................................................................................292.000.00-2.00-------------------------------------------------------
.......................................CTATATTTTTACATACAAG................................................................................................................................................................................................1912.002.00---1.00-----------1.00-----------------------------------------
............................................................................ATAATAAAGATGGGGGAAG...........................................................................................................................................................1912.002.00---1.00----1.00------------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTGTTCAGCCATG.............................................292.000.002.00--------------------------------------------------------
....GTATATATCTGTATGTATATTA................................................................................................................................................................................................................................2212.002.00------------------2.00--------------------------------------
.........................................................................................GGGAAGGTTTCTGTTTTTTTCTTAATA......................................................................................................................................2712.002.002.00--------------------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTGTTCAGCTATGGAAG.........................................3312.002.002.00--------------------------------------------------------
.............................................................................................AGGTTTCTGTTTTTTTCTTAGGTG.....................................................................................................................................2422.001.00--2.00------------------------------------------------------
.........................................................................................................................................AGAAATTGGATCTTACTGAAAAAC.........................................................................................2421.501.50-----1.50---------------------------------------------------
.........................................................................................................................................AGAAATTGGATCTTACTGAAAAACT........................................................................................2521.501.50-----0.50---------------0.50------------------------0.50----------
........................................................................................................TTTTTCTTAATAGGTGAAG...............................................................................................................................1921.501.50---1.50-----------------------------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTG.......................................................2021.501.50----------0.500.50--0.50------------------------------------------
.....................................................................................................................GTGAAGAAATCTTGAAGACC.................................................................................................................2031.331.33-----------------------1.00--------------------------0.33------
..................................................................................................................TAGGTGAAGAAATCTTGAAGAC..................................................................................................................2211.001.00--------------------1.00------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCCC..........................................................................................................................................271.000.00--1.00------------------------------------------------------
......................................................................................................................TGAAGAAATCTTGAAGA...................................................................................................................1731.001.00--------------------------1.00------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGCTC.................................................................................................................................................231.000.00-1.00-------------------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTG.......................................................1921.001.00----------0.500.50---------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTCAAA................................................................231.000.001.00--------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTTTTC............................................................................................................................................2811.001.00--1.00------------------------------------------------------
........................................................................................................................................................................TTTTTGTTTTTTTTTTAAATTATATTGTCCAA..................................................321.000.001.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTCTTT............................................................................................................................................251.000.00--1.00------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAATTACATT........................................................311.000.001.00--------------------------------------------------------
..................................................................................................................................................................................TTTTTTAAATTATATTGTTCAG..................................................2211.001.001.00--------------------------------------------------------
.................................................................................................................................................................................TTTTTTTAAATTATATTGTTCAA..................................................231.000.00----------1.00----------------------------------------------
.............................................................................................................................................................................GTTTTTTTTTTAAATTATATTGTTCAGCTATG.............................................3211.001.001.00--------------------------------------------------------
..................................................................................................................TAGGTGAAGAAATCTTGAAGACCAGAAATTGG........................................................................................................3211.001.00-----------------------------1.00---------------------------
...................................AACACTATATTTTTACATAC...................................................................................................................................................................................................2011.001.00--------1.00------------------------------------------------
.............................................................................................................................................ATTGGATCTTACTGAAAAACTGATGTTTCTTT.............................................................................321.000.00-1.00-------------------------------------------------------
....................................................................................................................GGTGAAGAAATCTTGAAGACC.................................................................................................................2111.001.00----------------1.00----------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTTC............................................................................................................................................2411.001.00-1.00-------------------------------------------------------
...............................................................................................................TAATAGGTGAAGAAATCTTGAAGA...................................................................................................................2411.001.00-------------------------------------1.00-------------------
........................................................................................................................................................................................AAATTATATTGTTCAGCTATGGAAGACGG.....................................291.000.00-1.00-------------------------------------------------------
.....TATATATCTGTATGTACC...................................................................................................................................................................................................................................181.000.00---1.00-----------------------------------------------------
...................................................................................................................................................................................TTTTTAAATTATATTGTTCAGCTATGGAAGACC......................................331.000.001.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTCT.............................................................................................................................................2611.003.00-1.00-------------------------------------------------------
.................................................................................................................................................................................................TGTTCAGCTATGGAAGATGGACT..................................231.000.00-1.00-------------------------------------------------------
.........................................................................................GGGAAGGTTTCTGTTTTTTTCTTATTAG.....................................................................................................................................281.000.001.00--------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTT.................................................................................................................................................2311.001.00-----1.00---------------------------------------------------
................................................................................TAAAGATGGGGGAAGGTTTCTGTTTTTTTCT...........................................................................................................................................3111.001.00-1.00-------------------------------------------------------
..............................CATAAAACACTATATTTTCTT.......................................................................................................................................................................................................211.000.00------1.00--------------------------------------------------
...............................................................................................................................................................ACTGATGTTTTTTTGTTTTTTTCTTA.................................................................261.000.00--1.00------------------------------------------------------
................................................................................................................AATAGGTGAAGAAATCTTG.......................................................................................................................1911.001.00----------------------------------1.00----------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAATT.............................................................2611.001.00--1.00------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTCC.............................................................................................................................................2611.003.00--1.00------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTCCTA..........................................................................................................................................291.000.00-1.00-------------------------------------------------------
........................................................................................................................................CAGAAATTGGATCTTACTGAAAAAC.........................................................................................2521.001.00--------------------1.00------------------------------------
.................................................................................AAAGATGGGGGAAGGTTTCTGTTTTTTCC............................................................................................................................................291.000.00-1.00-------------------------------------------------------
...................................................................................................................................................................................TTTTTAAATTATATTGTTCAG..................................................2111.001.001.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTCCT............................................................................................................................................251.000.00--1.00------------------------------------------------------
......ATATATCTGTATGTATATGTC...............................................................................................................................................................................................................................211.000.00---1.00-----------------------------------------------------
..............................................................................................................................................TTGGATCTTACTGAAAAACTGATGTTT.................................................................................2711.001.00---------------------------------------1.00-----------------
.................................................................................AAAGATGGGGGAAGGTTTCTGTTTC................................................................................................................................................251.000.00-1.00-------------------------------------------------------
...............................................................................................................................................................................................................AGATGGAGTTTTTTTTTCCC.......................201.000.00--1.00------------------------------------------------------
...........................................................................................................................AAATCTTGAAGACCAGAAATTGGACCT....................................................................................................271.000.00-1.00-------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTCTCC............................................................................................................................................241.000.00-1.00-------------------------------------------------------
.....................................CACTATATTTTTACATACAAG................................................................................................................................................................................................2111.001.00------------1.00--------------------------------------------
.......................................................................................................TTTTTTCTTAATAGGTGAAG...............................................................................................................................2021.001.00---1.00-----------------------------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTGTTCAGCTACGG............................................311.000.001.00--------------------------------------------------------
.................................................................................................................................................................................TTTTTTTAAATTATATTGTTCAGCTATGGAAG.........................................3211.001.001.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTC..............................................................................................................................................231.000.00--1.00------------------------------------------------------
........................................................................................................................................................................................AAATTATATTGTTCAGCTATGG............................................2211.001.00--------------------------------------1.00------------------
........................................................................................GGGGAAGGTTTCTGTTTTTTTCTTAACAG.....................................................................................................................................291.000.001.00--------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTCT............................................................................................................................................241.000.00--1.00------------------------------------------------------
.......................................................................................................................................................................TTTTTTGTTTTTTTTTTAAATTATATTG.......................................................2811.001.00-----------1.00---------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTGTTCAGCTATGG............................................3011.001.001.00--------------------------------------------------------
.................................AAAACACTATATTTTTACACAAG..................................................................................................................................................................................................231.000.00--------1.00------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTATA................................................................231.000.001.00--------------------------------------------------------
..............................................................................AATAAAGATGGGGGAAGGTTTCTGTTATTT..............................................................................................................................................301.000.001.00--------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTAAAA................................................................231.000.001.00--------------------------------------------------------
.................................................................................AAAGATGGGGGAAGGTTTC......................................................................................................................................................1911.001.00---------------------1.00-----------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTGTTCAGCTACG.............................................301.000.001.00--------------------------------------------------------
...............................................................................................................................................................ACTGATGTTTTTTTGTTTTTTTTTTAAACT.............................................................301.000.00--1.00------------------------------------------------------
.................................................................................................................................................................TGATGTTTTTTTGTTTTTTTTCTT.................................................................241.000.00-1.00-------------------------------------------------------
............................................................................ATAATAAAGATGGGGGAAGG..........................................................................................................................................................2011.001.00---------------------------------1.00-----------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCTTAACGG.....................................................................................................................................321.000.001.00--------------------------------------------------------
...........................................................................................................................................................................................TTATATTGTTCAGCTAGAG............................................191.000.00-------------------------------1.00-------------------------
........................................................................................................................................................................................................................TTTTTTTCATGATCCTTTAACTC...........2311.001.00--1.00------------------------------------------------------
...................................................................................................................................................................................TTTTTAAATTATATTGTTGAG..................................................211.000.001.00--------------------------------------------------------
.................................................................................................................................................................TGATGTTTTTTTGTTTTTTTTC...................................................................221.000.00--1.00------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTAAA.................................................................221.000.001.00--------------------------------------------------------
..............................................................................................................................................................................TTTTTTTTTTAAATTATATTGTTCAGCTATG.............................................3111.001.001.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTTTCTC.........................................................................................................................................301.000.00-1.00-------------------------------------------------------
..............................CATAAAACACTATATTTTTTG.......................................................................................................................................................................................................211.000.00-----------1.00---------------------------------------------
.........................................................................................GGGAAGGTTTCTGTTTTTTTCTTAATAGGTGAA................................................................................................................................3311.001.00-------------1.00-------------------------------------------
..........................................................................................................................................................................TTTGTTTTTTTTTTAAATTATATTGTTCAG..................................................3011.001.001.00--------------------------------------------------------
........................................TATATTTTTACATACAAG................................................................................................................................................................................................1831.001.00--------0.670.33-----------------------------------------------
........................................................................................................................................................................................AAATTATATTGTTCAAAGC...............................................191.000.00---------------1.00-----------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTTCTC..........................................................................................................................................271.000.00--1.00------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTATATTG.......................................................2911.001.001.00--------------------------------------------------------
..........................................................................................................................................................................................................................TTTTTCATGATCCTTTAAC.............1911.001.00------------------------------------------1.00--------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTCTC............................................................................................................................................2711.003.00--1.00------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTCTT............................................................................................................................................251.000.00--1.00------------------------------------------------------
.................................................................................AAAGATGGGGGAAGGTTTCTGTTTTTTCTT...........................................................................................................................................301.000.00--1.00------------------------------------------------------
...............................................................................................................................................................................TTTTTTTTTAAATTATATTGTTCAGCTAT..............................................2911.001.001.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTCTC............................................................................................................................................251.000.00--1.00------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTC...............................................................................................................................................251.000.00--1.00------------------------------------------------------
........................................................................ACAGATAATAAAGATGGGGGAAGGGT........................................................................................................................................................261.000.00-----1.00---------------------------------------------------
.........................................ATATTTTTACATACAAGTATG............................................................................................................................................................................................2111.001.00----------------1.00----------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTATACTG.......................................................291.000.001.00--------------------------------------------------------
..................................................................................................................................................................................TTTTTTAAATTATATTGTTCAGCTAT..............................................2611.001.001.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTTCT...........................................................................................................................................2811.001.00--1.00------------------------------------------------------
...........................................................................................................................................................................TTGTTTTTTTTTTAAATTATATTGTTCAG..................................................2911.001.001.00--------------------------------------------------------
...............................................................................................................................................................ACTGATGTTTTTTTGTTTTTTTTA...................................................................241.000.00-1.00-------------------------------------------------------
...............................................................................................................................................................ACTGATGTTTTTTTGTTTTTTTTTTAAATCAT...........................................................321.000.00-1.00-------------------------------------------------------
..............................................................................................................................................................................TTTTTTTTTTAAATTATATTGTTCAGCCATG.............................................311.000.001.00--------------------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTCCT...........................................................................................................................................261.000.00-1.00-------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTCTCT...........................................................................................................................................251.000.00-1.00-------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAATTACATC........................................................311.000.001.00--------------------------------------------------------
.....TATATATCTGTATGTGCG...................................................................................................................................................................................................................................181.000.00---1.00-----------------------------------------------------
............................................................................................................................................................................................................................TTTCATGATCCTTTAACTCT..........2011.001.00------------------------1.00--------------------------------
.....................................................................TATACAGATAATAAAATC...................................................................................................................................................................181.000.00---------1.00-----------------------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTCTTC............................................................................................................................................251.000.00-1.00-------------------------------------------------------
.....TATATATCTGTATGTATATTATATACAA.........................................................................................................................................................................................................................281.000.00------1.00--------------------------------------------------
............................................................................ATAATAAAGATGGGGGAAGGTTTCTGTTTT................................................................................................................................................3011.001.001.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTCCTT...........................................................................................................................................2811.003.00--1.00------------------------------------------------------
..............................................................................AATAAAGATGGGGGAAGGTGTC......................................................................................................................................................221.000.00----------------------------------------1.00----------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTTC.............................................................................................................................................241.000.00--1.00------------------------------------------------------
........................................................................................................................AAGAAATCTTGAAGACCAGAAATCGG........................................................................................................261.000.00-1.00-------------------------------------------------------
...............................................................................ATAAAGATGGGGGAAGGTTTCTG....................................................................................................................................................2311.001.00-1.00-------------------------------------------------------
...............................................................................................................TAATAGGTGAAGAAATCTTGAAGACC.................................................................................................................2611.001.00-----1.00---------------------------------------------------
.............................................................................................AGGTTTCTGTTTTTTTCTTA.........................................................................................................................................2021.001.00----------------1.00----------------------------------------
....................................................................................................................................................................................TTTTAAATTATATTGTTCAGCTAAG.............................................251.000.001.00--------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTACACT........................................................281.000.001.00--------------------------------------------------------
..............................CATAAAACACTATATTTTTG........................................................................................................................................................................................................201.000.00-----------1.00---------------------------------------------
................................................................................................................................................................................TTTTTTTTAAATTATATTGTTCAGCTAT..............................................2811.001.001.00--------------------------------------------------------
............................................................................................AAGGTTTCTGTTTTTTTCTTAATAGGTGAAGA..............................................................................................................................3211.001.00-------------1.00-------------------------------------------
.............................................................................................AGGTTTCTGTTTTTTTTTTG.........................................................................................................................................201.000.00-1.00-------------------------------------------------------
......................................................................................TGGGGGAAGGTTTCTGTTTTTTTCTT..........................................................................................................................................2611.001.00--1.00------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTACA...............................................................241.000.001.00--------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTCC............................................................................................................................................271.000.00--1.00------------------------------------------------------
.................................................................................AAAGATGGGGGAAGGTTTCTGTTTTTTTCT...........................................................................................................................................3011.001.00-1.00-------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAATTATA..........................................................2911.001.001.00--------------------------------------------------------
............................................................................................................................................AATTGGATCTTACTGAAAAACTGATG....................................................................................2611.001.00----------------------1.00----------------------------------
.....................................................................................ATGGGGGAAGGTTTCTGTTTTTCT.............................................................................................................................................241.000.00-1.00-------------------------------------------------------
.......................................................................................................................................................................TTTTTTGTTTTTTTTTTAAATTACATT........................................................271.000.001.00--------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTTTC..................................................................................................................................................221.000.00-1.00-------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTATATTGCCAG...................................................3311.001.001.00--------------------------------------------------------
...................TATATTATATACATAAAACACTATATTTCTAC.......................................................................................................................................................................................................321.000.00------1.00--------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTTCTCA.........................................................................................................................................3011.001.00--1.00------------------------------------------------------
.........................ATATACATAAAACACTATATTTTTACATACAAG................................................................................................................................................................................................3311.001.00---------------1.00-----------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTCT...............................................................................................................................................2511.001.00-1.00-------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTTGTT...................................................................................................................................................201.000.00-1.00-------------------------------------------------------
...........................................................................................................................AAATCTTGAAGACCAGAAATTGGATCTACTG................................................................................................311.000.001.00--------------------------------------------------------
.................................................................................................................ATAGGTGAAGAAATCTTGAAGACCAGAA.............................................................................................................2811.001.00--------------------------------1.00------------------------
.................................................................................................................................................................TGATGTTTTTTTGTTTTTTTTCT..................................................................231.000.00-1.00-------------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTCCTC..........................................................................................................................................291.000.00--1.00------------------------------------------------------
..................................................................................AAGATGGGGGAAGGTTTCTGTTTTTTCCTT..........................................................................................................................................301.000.00-1.00-------------------------------------------------------
........................................................................................................TTTTTCTTAATAGGTAAAG...............................................................................................................................191.000.00---1.00-----------------------------------------------------
...................................................................................AGATGGGGGAAGGTTTCTGTTTTTTCCC...........................................................................................................................................281.000.00--1.00------------------------------------------------------
......................................................................................................................................................................TTTTTTTGTTTTTTTTTTAAATTAGACT........................................................281.000.001.00--------------------------------------------------------
...............................................................................................................TAATAGGTGAAGAAATCTTGAAGATA.................................................................................................................2611.001.00-----1.00---------------------------------------------------
.................................................................................................................ATAGGTGAAGAAATCTTGAAGACC.................................................................................................................2411.001.00--1.00------------------------------------------------------
......................................................................ATACAGATAATAAAGATGGGGGAAGGTCTC......................................................................................................................................................301.000.00--1.00------------------------------------------------------
..............................................................................................................................................................................TTTTTTTTTTAAATTATATTGTTCAGCTAT..............................................3011.001.001.00--------------------------------------------------------
...............................................................................................................TAATAGGTGAAGAAATCTTGAAGACCAGAAT............................................................................................................311.000.00-----------------------------------------1.00---------------
.........................................................................................................................................................................................AATTATATTGTTCAGCTATGGAAGATGGATTT.................................321.000.00--1.00------------------------------------------------------
.........................................................................................................................................AGAAATTGGATCTTACTGAAAATA.........................................................................................241.000.00-----1.00---------------------------------------------------
..............................................................................................................................................................................TTTTTTTTTTAAATTATATTAAG.....................................................231.000.00----1.00----------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTATT...............................................................241.000.001.00--------------------------------------------------------
...................................................................................................................................................................ATGTTTTTTTGTTTTTTTTTTAAT...............................................................241.000.001.00--------------------------------------------------------
.............................................................................................AGGTTTCTGTTTTTTTGAC..........................................................................................................................................191.000.00--1.00------------------------------------------------------
....................................................................................................................................................................................................................................TCCTTTAACTCTCAAG......1640.750.75----------0.250.50---------------------------------------------
......................................................................................................................TGAAGAAATCTTGAAGACCAGAAATT..........................................................................................................2630.670.67-----------------0.67---------------------------------------
....................................................................................................................................................................................................TCAGCTATGGAAGATGGA....................................1830.670.67--------------------------------------------0.67------------
........................................................................................................................AAGAAATCTTGAAGACCAGAAA............................................................................................................2230.670.670.67--------------------------------------------------------
.......................................................................................................TTTTTTCTTAATAGGTGAA................................................................................................................................1920.500.50---0.50-----------------------------------------------------
........................................................................................................TTTTTCTTAATAGGTGAA................................................................................................................................1820.500.50---0.50-----------------------------------------------------
..........................................................................................................................................GAAATTGGATCTTACTGAAAAACT........................................................................................2420.500.50-----------------------------------------------0.50---------
......................................................................................................................................ACCAGAAATTGGATCTTACTGAAAAACTGAT.....................................................................................3120.500.500.50--------------------------------------------------------
.........................................................................................................TTTTCTTAATAGGTGAAG...............................................................................................................................1820.500.50------0.50--------------------------------------------------
.............................................................................................................................................ATTGGATCTTACTGAAAAACTG.......................................................................................2220.500.50---------------------------------------------0.50-----------
.............................................................................................................................................................................................ATATTGTTCAGCTATGGA...........................................1830.330.33----------------------0.33----------------------------------
.............................................................................................................................ATCTTGAAGACCAGAAATTGGA.......................................................................................................2230.330.33------------------------------------------------0.33--------
.....................................................................................................................GTGAAGAAATCTTGAAGACCAGAAATTGG........................................................................................................2930.330.33-----------------------------------------------------0.33---
........................................................................................................................AAGAAATCTTGAAGACCAGAAATTGGA.......................................................................................................2730.330.33-0.33-------------------------------------------------------
............................................................................................................................................................................................TATATTGTTCAGCTATGGAAGATG......................................2430.330.33---------------------------------------------------0.33-----
........................................................................................................................AAGAAATCTTGAAGACCAGAAATTGG........................................................................................................2630.330.33------------------0.33--------------------------------------
............................................................................................................................................................................................TATATTGTTCAGCTATG.............................................1730.330.33-----------0.33---------------------------------------------
............................................................................................................................AATCTTGAAGACCAGAAATT..........................................................................................................2030.330.33-----0.33---------------------------------------------------
.....................................................................................................................GTGAAGAAATCTTGAAGACCAGAAATTGGA.......................................................................................................3030.330.33-----------------------0.33---------------------------------
..........................................................................................................................................................................................ATTATATTGTTCAGCTATGGAAGATGG.....................................2730.330.33-0.33-------------------------------------------------------
......................................................................................................................................ACCAGAAATTGGATCTTACT................................................................................................2030.330.33----------------------------------------------------0.33----
.....................................................................................................................................................................................TTTAAATTATATTGTTCAG..................................................1930.330.33-----------0.33---------------------------------------------
.............................................................................................................................ATCTTGAAGACCAGAAATTGGATC.....................................................................................................2430.330.33-------------------------------------------------0.33-------
................................................................................................................................TTGAAGACCAGAAATTG.........................................................................................................1740.250.25------------------------------------------------------0.25--
.........................................................................................................................AGAAATCTTGAAGACCA................................................................................................................1750.200.20-------------------------------------------------------0.20-
...............................................................................................................................................TGGATCTTACTGAAAA...........................................................................................1670.140.14--------------------------------------------------------0.14

Antisense strand
GTTAGTATATATCTGTATGTATATTATATACATAAAACACTATATTTTTACATACAAGTATGCTTTTATTATACAGATAATAAAGATGGGGGAAGGTTTCTGTTTTTTTCTTAATAGGTGAAGAAATCTTGAAGACCAGAAATTGGATCTTACTGAAAAACTGATGTTTTTTTGTTTTTTTTTTAAATTATATTGTTCAGCTATGGAAGATGGAGTTTTTTTTCATGATCCTTTAACTCTCAAGTTCATC
.................................................................................(((((..((((((.(((...(((((((.......((((......))))..((((((((...)))).))))...))))))).))).))))))..))))).......................................................................
.................................................................................82...........................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR343335SRR343334SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR343336SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................................................GAAGACCAGAAATTGGG....................................................................................................... 171.000.00------------------------------------1.00--------------------
.....TATATATCTGTATGTATACG................................................................................................................................................................................................................................. 201.000.00---1.00-----------------------------------------------------
....GTATATATCTGTATGTAACAG................................................................................................................................................................................................................................. 211.000.00---1.00-----------------------------------------------------