ID: uc001hac.2_intron_1_0_chr1_203765625_f.3p
GENE: (2)
chr1:203770503-203770752+


(1)
AGO2.ip 		(2)
B-CELL 		(4)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(2)
XRN.ip

Sense strand
GCAGTCGGTATTTTTATGTGTTAGGAATCATTGGTGAAATGAGTGAATTGATCTCATTTTAAGATCCCTTTCTACTCTGAAAGTATGTTTCTGAGATTGAGTAGGAGGCCAGAAAATGATGACTTTTAGTAAAAGTCTATTAAAAGTTTCAGACTGAATAACTAATGTGAGATCCCAATTTTTCCTTTTTTTCATTTTAGATTTGGGGATATTCCCTGCCCAAAAAATTCCTGGAAAATTGACTAGTATT
..........................................................................................((((((.((((.((((((.(((....(((.(((((((((((......))))))))))))))..)))....((....))...............)))))).))))))))))..................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189785RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTTTAG..................................................29128.0028.009.009.00-3.00-2.00---4.00-1.00--------------------------------------------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTTCAG..................................................2926.000.0012.0011.00---3.00--------------------------------------------------
..................................................................................GTATGTTTCTGAGATTGAG.....................................................................................................................................................1914.004.00----4.00---------------------------------------------------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTTAG...................................................284.000.001.00--2.00-----1.00----------------------------------------------
.................................................................................AGTATGTTTCTGAGATTGAGTAGGAG...............................................................................................................................................2613.003.00----3.00---------------------------------------------------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTCTAG..................................................293.000.002.001.00------------------------------------------------------
..........................................................................................CTGAGATTGAGTAGGAGGCCAGAAAATTTTT.................................................................................................................................313.000.00-------------3.00------------------------------------------
.........................................................................................TCTGAGATTGAGTAGGAGGCCAGAA........................................................................................................................................2513.003.00-----------------1.00-2.00------------------------------------
...............................................................................................ATTGAGTAGGAGGCCAGAAAATG....................................................................................................................................2313.003.00------3.00-------------------------------------------------
....................................................................................ATGTTTCTGAGATTGAGTAGGAGGCC............................................................................................................................................2613.003.00--------3.00-----------------------------------------------
..............................................................................................GATTGAGTAGGAGGCCAGAAAATGATG.................................................................................................................................2712.002.00--1.00-----------------------------------1.00-----------------
...........................................................................................TGAGATTGAGTAGGAGGCCA...........................................................................................................................................2012.002.00-------2.00------------------------------------------------
...............................................................................................................................................................................CAATTTTTCCTTTTTTTCATTTTAG..................................................2512.002.00-----1.00-----1.00--------------------------------------------
...............................................................................AAAGTATGTTTCTGAGATTGAGTAGGA................................................................................................................................................2712.002.00----------------------2.00---------------------------------
....................................................................................................................TGATGACTTTTAGTAAAA....................................................................................................................1812.002.00-------2.00------------------------------------------------
...........................................................................................TGAGATTGAGTAGGAGGC.............................................................................................................................................1812.002.00-------1.00---------------------------------------1.00--------
.....................................................................................................TAGGAGGCCAGAAAATGATGAC...............................................................................................................................2212.002.00---------------------2.00----------------------------------
...........................................................................................TGAGATTGAGTAGGAGGCCAGAA........................................................................................................................................2312.002.00----------2.00---------------------------------------------
.............................ATTGGTGAAATGAGTGAATTGATCTCATTTTAAGA..........................................................................................................................................................................................3512.002.00------------------2.00-------------------------------------
................................................................................AAGTATGTTTCTGAGATTGAGTAGG.................................................................................................................................................2511.001.00--------------------1.00-----------------------------------
................................................................................................................................................................................AATTTTTCCTTTTTTTAG........................................................181.000.00---1.00----------------------------------------------------
....................TTAGGAATCATTGGTGAAATGA................................................................................................................................................................................................................2211.001.00----------------------------------------------1.00---------
.............................................................................TGAAAGTATGTTTCTGAGATTGAGTAGGA................................................................................................................................................2911.001.00------------1.00-------------------------------------------
............................................................................................GAGATTGAGTAGGAGGCCAGA.........................................................................................................................................2111.001.00------------1.00-------------------------------------------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCTTAG.....................................................261.000.001.00-------------------------------------------------------
....................................................................................................................................................................................TTTCCTTTTTTTCATTAG....................................................181.000.001.00-------------------------------------------------------
............................................................................................................................................................AATAACTAATGTGAGATCCCAATTTTTCCTT...............................................................3111.001.00--------------------------1.00-----------------------------
..........................................................................................................................................................TGAATAACTAATGTGAGATC............................................................................2011.001.00-------------------------1.00------------------------------
................................................................................................TTGAGTAGGAGGCCAGAAAA......................................................................................................................................2011.001.00-----------------------------1.00--------------------------
..................................................................................................................................................................................TTTTTCCTTTTTTTCAAGT.....................................................191.000.00-----1.00--------------------------------------------------
..........................................................................................................................................................................................TTTTTTCATTTTAGATTTGGGGAT........................................2411.001.00--------1.00-----------------------------------------------
............................................................................................GAGATTGAGTAGGAGGCCAGAA........................................................................................................................................2211.001.00--1.00-----------------------------------------------------
..................................................................................................................................................................................................................................ATTCCTGGAAAATTGACTAGTATCAAG271.000.00--------1.00-----------------------------------------------
...................................................................................................................................................TTCAGACTGAATAACTAATGTGAG...............................................................................2411.001.00---------------1.00----------------------------------------
............................................................................................................................................................................TCCCAATTTTTCCTTTTTTTCATTTTAG..................................................2811.001.001.00-------------------------------------------------------
...............................................................................AAAGTATGTTTCTGAGAT.........................................................................................................................................................1811.001.00--------------1.00-----------------------------------------
..............TATGTGTTAGGAATCATTGG........................................................................................................................................................................................................................2011.001.00--------------------------------------------------1.00-----
....................................................................................................................................................TCAGACTGAATAACTAATGTGAGATCCCAATT......................................................................3211.001.00-------------------------------1.00------------------------
........................................................................................TTCTGAGATTGAGTAGGAGGCCA...........................................................................................................................................2311.001.00------------------------------------------1.00-------------
..................................................................................................GAGTAGGAGGCCAGAAAATG....................................................................................................................................2011.001.00------------------------1.00-------------------------------
...................................................................................................................................................................................TTTTCCTTTTTTTCATTTTCTG.................................................221.000.00-1.00------------------------------------------------------
..................................................................................................GAGTAGGAGGCCAGAAAATA....................................................................................................................................201.000.00--1.00-----------------------------------------------------
....TCGGTATTTTTATGTGTTAGGAATCATTGGTG......................................................................................................................................................................................................................3211.001.00--------1.00-----------------------------------------------
................................................................................................................................................AGTTTCAGACTGAATAACTAATGTGAGATCCCAA........................................................................3411.001.00----------------------------------------1.00---------------
...........................................................................................TGAGATTGAGTAGGATTT.............................................................................................................................................181.000.00------1.00-------------------------------------------------
.................................................................................................TGAGTAGGAGGCCAGAAAATGAT..................................................................................................................................2311.001.00----------1.00---------------------------------------------
...........................................................................................TGAGATTGAGTAGGAGGCC............................................................................................................................................1911.001.00---------------------------------------1.00----------------
......................................................................................................AGGAGGCCAGAAAATGATG.................................................................................................................................1911.001.00----------1.00---------------------------------------------
.........................................................................................TCTGAGATTGAGTAGGAGGC.............................................................................................................................................2011.001.00--------------1.00-----------------------------------------
...............................................................................................................................................................................CAATTTTTCCTTTTTGACT........................................................191.000.00----------------------------------1.00---------------------
.................................................................................................................................................GTTTCAGACTGAATAACTAATGTGAGATC............................................................................2911.001.00-----------------------------------------1.00--------------
...........................................................TAAGATCCCTTTCTACTCTGAAAGT......................................................................................................................................................................2511.001.00-------------------------------------------1.00------------
...........................................................................................TGAGATTGAGTAGGAGGCCAGAAAA......................................................................................................................................2511.001.00-------1.00------------------------------------------------
................................................................................AAGTATGTTTCTGAGATTGT......................................................................................................................................................201.000.00------1.00-------------------------------------------------
................................GGTGAAATGAGTGAATTGA.......................................................................................................................................................................................................1911.001.00-----------------------1.00--------------------------------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTTCAT..................................................291.000.00-1.00------------------------------------------------------
...............................................................................AAAGTATGTTTCTGAGATTGAGTAGG.................................................................................................................................................2611.001.00--------------------------------------------1.00-----------
................................................................................................TTGAGTAGGAGGCCAGAAAATG....................................................................................................................................2211.001.00-----------------1.00--------------------------------------
........................................................................................TTCTGAGATTGAGTAGA.................................................................................................................................................171.000.00--------------------------------1.00-----------------------
.......................................................................................................GGAGGCCAGAAAATGATGACTTT............................................................................................................................2311.001.00--1.00-----------------------------------------------------
....................................................................................................................................................TCAGACTGAATAACTAATGTGAGATC............................................................................2611.001.00---------------------------------------------1.00----------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTTTA...................................................2811.001.00---1.00----------------------------------------------------
..................................................................................GTATGTTTCTGAGATTGAGTAGGAGGCCAGAA........................................................................................................................................3211.001.00---------------1.00----------------------------------------
............................................................................CTGAAAGTATGTTTCTGAGATTGAGTAGG.................................................................................................................................................2911.001.00-----------------------------------1.00--------------------
............................................................................................GAGATTGAGTAGGAGGCCAGAAAATG....................................................................................................................................2611.001.00--1.00-----------------------------------------------------
.....................................................................................TGTTTCTGAGATTGAGTAGGA................................................................................................................................................2111.001.00---------------------------1.00----------------------------
................................................................................................TTGAGTAGGAGGCCAGAAAATGATG.................................................................................................................................2511.001.00---------------------------------------------------1.00----
.....................................................................................................................................................CAGACTGAATAACTAATGTGAGATCCC..........................................................................2711.001.00------------------------------------1.00-------------------
......................................................................................................................................................AGACTGAATAACTAATGTGAG...............................................................................2111.001.00---------------------------------1.00----------------------
..........................................................TTAAGATCCCTTTCTACTCTGAAAGT......................................................................................................................................................................2611.001.00------------------------------1.00-------------------------
...............................................................................................................................................................................CAATTTTTCCTTTTTTTCATTTCAG..................................................251.000.001.00-------------------------------------------------------
............................................................................................................................................................................TCCCAATTTTTCCTTTTTTTCATTTTAGATTTGG............................................3411.001.00------------1.00-------------------------------------------
.....................................................................................................................................................CAGACTGAATAACTAATGT..................................................................................1911.001.00------1.00-------------------------------------------------
...................................................................................................................................................................................TTTTCCTTTTTTTCATTTGAG..................................................211.000.00--------------------1.00-----------------------------------
..............................................................................................................................................................................CCAATTTTTCCTTTTTTTCATTTTAG..................................................2611.001.00-1.00------------------------------------------------------
...................................................................................................AGTAGGAGGCCAGAAAATCATG.................................................................................................................................221.000.00--1.00-----------------------------------------------------
..........................................................................................CTGAGATTGAGTAGGAGGCCA...........................................................................................................................................2111.001.00--1.00-----------------------------------------------------
.....................................................................................................................................................................................................TAGATTTGGGGATATTCC...................................1811.001.00----------1.00---------------------------------------------
...........................................................................................................................................................................ATCCCAATTTTTCCTTTTTTTCATTTTAA..................................................2911.001.001.00-------------------------------------------------------
......................AGGAATCATTGGTGAAATGAGTGAAT..........................................................................................................................................................................................................2611.001.00----------------------------------------------------1.00---
............................................GAATTGATCTCATTTTAAGAT.........................................................................................................................................................................................2111.001.00-------------------------------------------------1.00------
...............................................................................................................................................AAGTTTCAGACTGAATAACTAATGTGAGA..............................................................................2911.001.00------------------------------------------------1.00-------
............................................................................................GAGATTGAGTAGGAGGC.............................................................................................................................................1720.500.50-----------------------------------------------------0.50--
.......................................................................................TTTCTGAGATTGAGTAGG.................................................................................................................................................1820.500.50------0.50-------------------------------------------------
...................................................................................................................................................................................TTTTCCTTTTTTTCATTTTAG..................................................2130.330.33-----------0.33--------------------------------------------
..................................................................................................................................................................................................TTTTAGATTTGGGGATATT.....................................1930.330.33--0.33-----------------------------------------------------
.....................................................................................................................................................................................................................CCCTGCCCAAAAAATTCCTGGAA..............2330.330.33------------------------0.33-------------------------------
.......................................................................................................................................................................................................................................TGGAAAATTGACTAGTATT1930.330.33--------------------------0.33-----------------------------
..............................................................................................................................................................................................................GGATATTCCCTGCCCAAAAAATTCC...................2530.330.33-------------------------0.33------------------------------
................................................................................................................................................................................................CATTTTAGATTTGGGGATA.......................................1930.330.33------------------------------------------------------0.33-
.................................................................................................................................................................................................................................AATTCCTGGAAAATTGA........1740.250.25-------------------------------------------------------0.25

Antisense strand
GCAGTCGGTATTTTTATGTGTTAGGAATCATTGGTGAAATGAGTGAATTGATCTCATTTTAAGATCCCTTTCTACTCTGAAAGTATGTTTCTGAGATTGAGTAGGAGGCCAGAAAATGATGACTTTTAGTAAAAGTCTATTAAAAGTTTCAGACTGAATAACTAATGTGAGATCCCAATTTTTCCTTTTTTTCATTTTAGATTTGGGGATATTCCCTGCCCAAAAAATTCCTGGAAAATTGACTAGTATT
..........................................................................................((((((.((((.((((((.(((....(((.(((((((((((......))))))))))))))..)))....((....))...............)))))).))))))))))..................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189785RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................................................TTCCCTGCCCAAAAAATA..................... 181.000.00-------------------------------------1.00------------------
...................................................................................................................................................TTCAGACTGAATAACTGATA................................................................................... 201.000.00-----------1.00--------------------------------------------
.....CGGTATTTTTATGTGTTTCA................................................................................................................................................................................................................................. 201.000.00----------------1.00---------------------------------------
...........................................................................................TGAGATTGAGTAGGACCC............................................................................................................................................. 181.000.00----------------1.00---------------------------------------
...................................................................................................................................................................................................................TTCCCTGCCCAAAAAATAAAG.................. 211.000.00----------------------------1.00---------------------------
................................................................................................................................................................................AAATGAAAAAAAGGAAAAATT..................................................... 2120.500.50-----------------------0.50--------------------------------