ID: uc001gyx.5
GENE: C1orf37(6)
chr1:202989729-202989978+


(7)
B-CELL
(27)
BREAST
(41)
CELL-LINE
(1)
CERVIX
(4)
FIBROBLAST
(3)
HEART
(4)
HELA
(1)
KIDNEY
(5)
LIVER
(2)
OTHER
(2)
RRP40.ip
(61)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTCATCCAAATGTATTTACCCTTCTTTCAAAGGGTAGGTTTTCTTTGATCTCTGTATAGAAACATGTATAAAGAGAGAAGATAAAAGTGTATCTCACTAGCTTTAGTTGAGCCATAGGATTTTCTTTGGTGGACTCTTAGAGCCATATAATGTTTCTTCTAAGCCATTGGATTAATTCTCAGTTCTCTTCAGTCCCCTAGGTTAAAGAGCAAGTGTACAGGAGGATTGCAGCCTCCCGTTCAGTACGAAG
...............................................................................................................................((.(((((...((((.........(((...(((((....)))))..)))........))))..))))))).....................................................
................................................................................................................113....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR343335SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR038858(GSM458541)
MEL202. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR029127(GSM416756)
A549. (cell line)
SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040037(GSM532922)
G243T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................TTGGATTAATTCTCAGTTCTCTTCAG..........................................................261412.00412.0078.0025.0021.0017.0020.0011.009.0010.0011.008.005.007.005.003.004.005.005.008.006.005.003.003.006.003.006.002.005.002.004.004.003.00-4.002.002.004.004.002.004.00-4.001.002.001.003.001.002.002.001.003.002.00-1.001.00--2.003.004.004.001.002.001.001.002.002.001.003.003.00-2.001.003.001.003.00----1.001.00--2.00-2.00-1.002.00-1.00-1.002.00--1.00-1.00--1.00-1.00----------1.00-------1.00-----------1.001.00-----1.00-----1.00------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTCAG..........................................................251371.00371.0058.0022.0016.0018.0013.009.0012.0010.004.006.004.006.006.008.006.004.005.002.002.003.005.003.001.003.001.005.002.005.002.002.003.00-2.003.004.001.00-3.001.005.001.003.003.003.002.002.001.002.002.001.00-3.003.003.003.004.002.001.00--3.00-2.002.001.001.001.00---1.002.00-2.00--2.002.002.001.001.001.002.00-1.00-1.001.00-1.001.002.00--1.00-----1.00-1.00-1.001.00-1.001.001.001.001.00---1.001.00-1.001.001.001.00-1.001.001.00-1.001.001.001.001.001.001.00---1.00--1.00-1.001.00-1.00--1.00-1.00-1.00-------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTT.............................................................2219.009.003.00------------------------------5.00--------------------------------------------------------------------------1.00-----------------------------------------------------
.....................................................................................................................................................................ATTGGATTAATTCTCAGTTCTCTTCAG..........................................................2716.006.002.00-1.00------------------------------------------2.00-----1.00------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCTCTTCA...........................................................2515.005.001.00-----------1.00----------1.00---------1.00--1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTT..................................................................1814.004.00----------3.00----------------------------------------------------------------------------------------1.00------------------------------------------------------------
........................................................................................................................................................................GGATTAATTCTCAGTTCTCTTCAG..........................................................2413.003.00--2.00--------------------------------------------------------------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCT................................................................2013.003.00----------2.00------------------------------------------------------------------------------------------------------------------------------------------1.00----------
...............................................................................................................................................................TAAGCCATTGGATTAATTCTCAGTTC.................................................................2612.002.002.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTCA...........................................................2412.002.00---------1.00-------------------------------1.00----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTCAGA.........................................................2612.00371.00-1.00--------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTCAT..........................................................2512.002.00----------------------------------------------1.00----------------------------------------------------------------------1.00------------------------------------------
.............................................................................................................................................................................AATTCTCAGTTCTCTTCAGTCCCCTAGA.................................................282.000.002.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCTCTT.............................................................2312.002.00-------------------------------1.00---------------------------------------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTC............................................................2312.002.00---1.00--------------------------------------------1.00---------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCTCTTCAGA.........................................................2711.00412.00---------------------1.00------------------------------------------------------------------------------------------------------------------------------------------
..........................TCAAAGGGTAGGTTTTCTGGTA..........................................................................................................................................................................................................221.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00---------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTC...............................................................2011.001.00------------------------------------------------------------------------------------------------------------------------------------------------1.00---------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCTCTTC............................................................2411.001.00---------------1.00------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGATC.................................................................191.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................GATTTTCTTTGGTGGCGGT..................................................................................................................191.000.00---------------------------------------------------------------------------------1.00------------------------------------------------------------------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTCAA..........................................................2511.002.00------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------
........................................................................................................................................................................................................................ACAGGAGGATTGCAGCCAGGC.............211.000.00-------------------------------------------------------------------------------------------------------------------------------------------------------1.00--------
..........................TCAAAGGGTAGGTTTTCTGTTC..........................................................................................................................................................................................................221.000.00-------------------------------------------------------------------------------------------------------------------------------------------1.00--------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTTCAT............................................................231.000.00-------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCG................................................................201.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TTTAGTTGAGCCATAGGATTTTCTTTGGTGGAC....................................................................................................................3311.001.00------------------------------------------------------------------------------------------------------------------------------1.00---------------------------------
.........................................................................................................................................................................GATTAATTCTCAGTTCTCTTCAG..........................................................2311.001.00-------------------------------------------------------------------------------------------------1.00--------------------------------------------------------------
.......................................................................................................................................................................TGGATTAATTCTCAGTTCTCTTCAGAA........................................................2711.00371.00------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................ATTAATTCTCAGTTCTCTTCAG..........................................................2211.001.00-----------------------------------------------------------------------------------------1.00----------------------------------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTTCAG..............................................................2211.004.00--------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------
.....................................................................................................................................................................................................TAGGTTAAAGAGCAAGTGTACAGTAGG..........................271.000.00-------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TAGGTTAAAGAGCAAGTGTACAGGAGGA.........................2831.001.00---------------------------------------------------------------------------1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................................................AAGTGTACAGGAGGATTA......................181.000.00--------------------------------------------------------------------------------------------------------------------------------------------------1.00-------------
..........................TCAAAGGGTAGGTTTTCCTGT...........................................................................................................................................................................................................211.000.00--------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------
..............................................................................................................................................................................ATTCTCAGTTCTCTTCAG..........................................................1811.001.00----------------------------------------------------------------------------------------------------------------------------------------1.00-----------------------
.........................................................................................................................................................................................................................CAGGAGGATTGCAGCTCAG..............191.000.00----------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------
......................................................................................................................................................................TTGGATTAATTCTCAGTTCTCTTCAGAA........................................................2811.00412.00------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AGAGCAAGTGTACAGGAGGATT.......................2240.500.50-------------------------------------------------------------------------------------------------------------------------------------------------------------0.250.25-
...............................................................................................................................................................................................................................GATTGCAGCCTCCCGTTCAGTAC....2320.500.50----------------------------------------------------------------------------------------------------------------------------------------------------------0.50-----
...................................................................................................................................................................................................CCTAGGTTAAAGAGCAAGTGTACAGG.............................2620.500.50-----------------------------------0.50----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TAAAGAGCAAGTGTACAGGAGGATTGCAGCCTCCCG............3620.500.50------------------------------------------------------------------------------------------------------------------------------------------------------------0.50---
.....................................................................................................................................................................................................................TGTACAGGAGGATTGCAGCC.................2030.330.33---------------------------------------------------------------------------------------------------------------------------------------------------------0.33------
.......................................................................................................................................................................................................................TACAGGAGGATTGCAGCC.................1830.330.33----------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CTAGGTTAAAGAGCAAGTGTACAGGAG...........................2730.330.33---------------------------------------------------------------------------0.33------------------------------------------------------------------------------------
.................................................................................................................................................................................................CCCCTAGGTTAAAGAG.........................................1630.330.33---------------------------------------------------------------------------0.33------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TAGGTTAAAGAGCAAGTGTACAGGAGG..........................2730.330.33---------------------------------------------------------------------------0.33------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AGAGCAAGTGTACAGGAGGATTG......................2340.250.25-----------------------------------------------------------------------------------------------------------------------------------------------------------0.25----
..........................................................................................................................................................................................................TAAAGAGCAAGTGTACAGGAGG..........................2240.250.25---------------------------------------------------------------------------0.25------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TTAAAGAGCAAGTGTACAGGAGGATTGCAG...................3040.250.25---------------------------------------------------------------------------0.25------------------------------------------------------------------------------------
......................................................................................................................ATTTTCTTTGGTGGACT...................................................................................................................1740.250.25---------------------------------------------------------------------------------------------------------------------------------------------------------------0.25
......................................................................................................................................................................................................AGGTTAAAGAGCAAGTGTACAGGAGGATT.......................2940.250.25---------------------------------------------------------------------------------------------------------------------------------------------------------0.25------
...............................................................................................................................................................................................................AGCAAGTGTACAGGAGGATTG......................2140.250.25-----------------------------------------------------------------------------------------------------------------------------------------------------------0.25----
.............................................................................................................................................................................................................AGAGCAAGTGTACAGGAGGATTGCA....................2540.250.25---------------------------------------------------------------------------------------------------------------------------------------------------------0.25------
............................................................................................................................................................................................................AAGAGCAAGTGTACAG..............................1670.140.14---------------------------------------------------------------------------0.14------------------------------------------------------------------------------------

Antisense strand
CTCATCCAAATGTATTTACCCTTCTTTCAAAGGGTAGGTTTTCTTTGATCTCTGTATAGAAACATGTATAAAGAGAGAAGATAAAAGTGTATCTCACTAGCTTTAGTTGAGCCATAGGATTTTCTTTGGTGGACTCTTAGAGCCATATAATGTTTCTTCTAAGCCATTGGATTAATTCTCAGTTCTCTTCAGTCCCCTAGGTTAAAGAGCAAGTGTACAGGAGGATTGCAGCCTCCCGTTCAGTACGAAG
...............................................................................................................................((.(((((...((((.........(((...(((((....)))))..)))........))))..))))))).....................................................
................................................................................................................113....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR343335SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR038858(GSM458541)
MEL202. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR029127(GSM416756)
A549. (cell line)
SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040037(GSM532922)
G243T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.....................................................................AAAGAGAGAAGATAAAAGTTGA............................................................................................................................................................... 222.000.00---------------------------------------------------------------------2.00------------------------------------------------------------------------------------------
........................................................................................................................................................TTTCTTCTAAGCCATTAGA............................................................................... 192.000.00--------------------------------------------------2.00-------------------------------------------------------------------------------------------------------------
............TATTTACCCTTCTTTTAC............................................................................................................................................................................................................................ 181.000.00-----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................AGAGAGAAGATAAAAGTGGTG.............................................................................................................................................................. 211.000.00---------------------------------------------------------------------1.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TCCTCCTGTACACTTGCTCT......................... 2040.250.25---------------------------------------------------------------------------0.25------------------------------------------------------------------------------------