ID: uc001gys.3_intron_6_0_chr1_202920293_r.5p
GENE: (2)
chr1:202923169-202923418-


(1)
BRAIN 		(4)
BREAST 		(7)
CELL-LINE 		(4)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(22)
SKIN 		(1)
XRN.ip

Sense strand
GACAATGGACTTTGCTCACTATGATGACATGATCTCCATTGACCTCCATTGTATGTACTTTAATGCATGATGATATATTTTGTATGATGAGTTGTAGCTGATGGCTGGTTTGTGAGTTAACTGGGGTCTCAGGTTTTGGTGACTCTGGGTCTAGAAGATGTAGAGAGGTGGTATAGGAGCTAGTGATAGAGGAGCTAGAGGGAATCGGAAGAACTAATAGTAAATGATTTGGACTGAAAAAGGAAAAGAC
......................................................................................................................................((((((..(((((...((((....((((.........))))....))))...)))))..))))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785GSE20417(GSM514985)
Colon and lung cancer pool. 		TAX577589(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................................GGTTTTGGTGACTCTAGA.....................................................................................................1824.000.00-1.00-2.002.00-1.00--2.001.00-1.00-1.001.001.00----1.00--1.00-1.00--1.001.00--1.001.001.00-1.001.00--1.00-
...................................................................................................................................GGTTTTGGTGACTCTAG......................................................................................................176.000.00-1.00---1.00----1.00--1.00------1.00-1.00--------------------
...................................................................................................................................GGTTTTGGTGACTCTAGAT....................................................................................................196.000.00---1.00----2.00----------1.00-----1.00-------------1.00---
.....................................................................................................................................................TCTAGAAGATGTAGAGAGGTGGTAT............................................................................2514.004.00--4.00----------------------------------------
.................................................................................................................................................................AGAGAGGTGGTATAGTGG.......................................................................182.000.00-----------2.00-------------------------------
......................................................................................................................................TTTGGTGACTCTGGGTAACC................................................................................................202.000.00-----------------1.001.00------------------------
..............................................................................TTTGTATGATGAGTTGTAGCTGATGGC.................................................................................................................................................2711.001.00-----------------------1.00-------------------
.........................................................................................................................................................................................ATAGAGGAGCTAGAGGGAATCGGAAG.......................................2611.001.001.00------------------------------------------
...AATGGACTTTGCTCACTATGATGAC..............................................................................................................................................................................................................................2511.001.00------------------------------------1.00------
....................................................................................................................................GTTTTGGTGACTCTGGATAA..................................................................................................201.000.00-------1.00-----------------------------------
.............................................................................................................................................................................................AGGAGCTAGAGGGAATCGGAAGAACTAAT................................2911.001.001.00------------------------------------------
......................................................................................................................................TTTGGTGACTCTGGGTTCCC................................................................................................201.000.00----------------------------1.00--------------
....................................................................................................................................GTTTTGGTGACTCTGATAA...................................................................................................191.000.00------1.00------------------------------------
...............................................................................................................................................................................................GAGCTAGAGGGAATCGGAAGA......................................2111.001.00----------------------------------------1.00--
...................................................................................................................................................................AGAGGTGGTATAGGAGCTAGTGACAG.............................................................261.000.001.00------------------------------------------
.................................................................................................................................................................................................................AGAACTAATAGTAAATGATTTGGACTGAAAA..........3111.001.00-----1.00-------------------------------------
...............................................................................TTGTATGATGAGTTGTAG.........................................................................................................................................................1811.001.00-------------------------------1.00-----------
..............................................................................................................................................................TGTAGAGAGGTGGTATAGGAGCTAGCGA................................................................281.000.001.00------------------------------------------
..........................................................................................................................................................................GTATAGGAGCTAGTGATAGAGGAGC.......................................................2511.001.00-1.00-----------------------------------------
........................................................................................................................................TGGTGACTCTGGGTCTAGAAGATGT.........................................................................................2511.001.00---------------------------1.00---------------
...................................................................................................................................................................................................TAGAGGGAATCGGAAGAACT...................................2011.001.00--------------------------------1.00----------
........................................................................................................................................TGGTGACTCTGGGTCTAGAAGACGT.........................................................................................251.000.001.00------------------------------------------
.............................................CCATTGTATGTACTT..............................................................................................................................................................................................1590.110.11------------------------------------------0.11

Antisense strand
GACAATGGACTTTGCTCACTATGATGACATGATCTCCATTGACCTCCATTGTATGTACTTTAATGCATGATGATATATTTTGTATGATGAGTTGTAGCTGATGGCTGGTTTGTGAGTTAACTGGGGTCTCAGGTTTTGGTGACTCTGGGTCTAGAAGATGTAGAGAGGTGGTATAGGAGCTAGTGATAGAGGAGCTAGAGGGAATCGGAAGAACTAATAGTAAATGATTTGGACTGAAAAAGGAAAAGAC
......................................................................................................................................((((((..(((((...((((....((((.........))))....))))...)))))..))))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785GSE20417(GSM514985)
Colon and lung cancer pool. 		TAX577589(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
........................................GACCTCCATTGTATGCGAA............................................................................................................................................................................................... 191.000.00-1.00-----------------------------------------
.............................................................................................GTAGCTGATGGCTGGGAA........................................................................................................................................... 181.000.00-------1.00-----------------------------------