ID: uc001gwz.2_intron_5_0_chr1_201822226_f.5p
GENE: (6)
chr1:201822176-201822425+


(1)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
TTTTTACCACTTGTGCCCATATGATCTGTAACATGGAGGAGCTGGAAAAGGTAAGCAGGTCTTTGGATCAATAACAGACTTCATGCTTAAAAGTTTTATTCATGCAGAGCAGTGAGTCATTTCATGATAGCAGCACGAAAAAGCACACTAACCAGTATTAGAGATAGATTTAACATTTTTATTAAATTATTGTTGTTATTTTTCCAGACAGGGTCTTGCTCTGTCACCCAGGCTGGACTACAGTGGTGCA
...................................................((((((((((((((......))).)))))...))))))...(((((.(((.(((...((.(((((....)))))....)).))).))))))))..........................................................................................................
..................................................51.................................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................TAGCAGCACGAAAAAATTG........................................................................................................19232.000.00146.0049.0030.004.00-----1.00---1.00--------------------1.00----------
...............................................................................................................................TAGCAGCACGAAAAATTG.........................................................................................................1850.000.005.0043.002.00------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATTT........................................................................................................1913.000.004.007.002.00------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATCG........................................................................................................1910.000.006.004.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAACTG........................................................................................................1910.000.007.002.001.00------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATGG........................................................................................................197.000.001.006.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAATG........................................................................................................197.000.005.001.001.00------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTC.........................................................................................................187.000.00-7.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAACTTG........................................................................................................196.000.004.002.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAGTG........................................................................................................195.000.002.003.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATAG........................................................................................................195.000.003.002.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATG.........................................................................................................185.000.001.003.001.00------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTT.........................................................................................................184.000.001.001.001.00--------------------1.00---------------------
...............................................................................................................................TAGCAGCACGAAAAATG..........................................................................................................174.000.00-4.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATCT........................................................................................................194.000.001.003.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATTA........................................................................................................194.000.002.002.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATT.........................................................................................................184.000.002.001.00---------1.00---------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTTG........................................................................................................193.000.002.001.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTTT........................................................................................................193.000.001.002.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATAG.........................................................................................................183.000.001.002.00-------------------------------------------
.............................AACATGGAGGAGCTGCTGA..........................................................................................................................................................................................................193.000.00-------------------1.00----------1.00--------1.00-----
..................ATATGATCTGTAACATGGAGG...................................................................................................................................................................................................................2113.003.00---------------2.001.00----------------------------
..................ATATGATCTGTAACATGGAGGAGCTG..............................................................................................................................................................................................................2613.003.00--------3.00------------------------------------
...................TATGATCTGTAACATGGAGGAGCTG..............................................................................................................................................................................................................2513.003.00----------2.001.00---------------------------------
...............................................................................................................................TAGCAGCACGAAAAAACTT........................................................................................................192.000.00-1.00-1.00-----------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATCG.........................................................................................................182.000.00-2.00-------------------------------------------
...............................CATGGAGGAGCTGGAAAAGGGT.....................................................................................................................................................................................................222.000.00--------------2.00------------------------------
....................ATGATCTGTAACATGGAGGAGCTGGA............................................................................................................................................................................................................2612.002.00-------------1.00--------------1.00----------------
...............................................................................................................................TAGCAGCACGAAAAACTTT........................................................................................................192.000.00-1.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................ACCCAGGCTGGACTACAGCGAC...222.000.00-----2.00---------------------------------------
......................GATCTGTAACATGGAGGAGCTGGAA...........................................................................................................................................................................................................2511.001.00--------------------------------1.00------------
...............................................................................................................................TAGCAGCACGAAAAAATGT........................................................................................................191.000.00-1.00-------------------------------------------
................................................................................................................................................................................................................CAGGGTCTTGCTCTGTCACCCAGGCGGAG.............291.000.00-----1.00---------------------------------------
.............................................................................................................................................................................................................................TGTCACCCAGGCTGGACTACAGCGAC...261.000.00----1.00----------------------------------------
.......................................................................................................................................................................................................................TTGCTCTGTCACCCAGGCTGGACTACAGTTG....311.000.00------1.00--------------------------------------
....................................................AAGCAGGTCTTTGGATAGA...................................................................................................................................................................................191.000.00-----1.00---------------------------------------
.................CATATGATCTGTAACATGGAGGAGCTGG.............................................................................................................................................................................................................2811.001.00-------1.00-------------------------------------
...............................................................................................................................TAGCAGCACGAAAAACTGG........................................................................................................191.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAT...........................................................................................................161.000.00-1.00-------------------------------------------
.....................TGATCTGTAACATGGAGGAGCTGGAAAA.........................................................................................................................................................................................................2811.001.00----------------1.00----------------------------
...............................................................................................................................TAGCAGCACGAAAAATCCG........................................................................................................191.000.001.00--------------------------------------------
.......................ATCTGTAACATGGAGGAGCCGG.............................................................................................................................................................................................................221.000.00-----1.00---------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAGTTG........................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAGCGG........................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAACCAG........................................................................................................191.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAACTA........................................................................................................191.000.00--1.00------------------------------------------
...........................................................................................................................................................................................................................TCTGTCACCCAGGCTGGACCCTC........231.000.00----1.00----------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAAAC........................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAACTCG........................................................................................................191.000.00-1.00-------------------------------------------
......................GATCTGTAACATGGAGGAGCTGG.............................................................................................................................................................................................................2311.001.00-----------------------------------1.00---------
....................ATGATCTGTAACATGGAGGAGCTG..............................................................................................................................................................................................................2411.001.00---------------------------------1.00-----------
...............................................................................................................................TAGCAGCACGAAAAATTA.........................................................................................................181.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAACA.........................................................................................................181.000.00-----------------------------1.00---------------
...............................................................................................................................TAGCAGCACGAAAAATCAG........................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAT..........................................................................................................171.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTGT........................................................................................................191.000.00-1.00-------------------------------------------
...................TATGATCTGTAACATGGAGGAGCTGGT............................................................................................................................................................................................................271.000.00-------------------------------1.00-------------
...............................................................................................................................TAGCAGCACGAAAAAAG..........................................................................................................171.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTGG........................................................................................................191.000.00------------1.00--------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATTC........................................................................................................191.000.001.00--------------------------------------------
...................TATGATCTGTAACATGGAGGAG.................................................................................................................................................................................................................2211.001.00---------------------1.00-----------------------
...............................................................................................................................TAGCAGCACGAAAAAA...........................................................................................................161.000.00-1.00-------------------------------------------
..TTTACCACTTGTGCCCATATG...................................................................................................................................................................................................................................2111.001.00---------1.00-----------------------------------
...............................................................................................................................TAGCAGCACGAAAAATC..........................................................................................................171.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTCT........................................................................................................191.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATTAG........................................................................................................191.000.001.00--------------------------------------------
.............................AACATGGAGGAGCTGGAA...........................................................................................................................................................................................................1811.001.00-------1.00-------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAA..........................................................................................................171.000.001.00--------------------------------------------
...........................GTAACATGGAGGAGCTGGA............................................................................................................................................................................................................1911.001.00------------------------1.00--------------------
......................GATCTGTAACATGGAGGAGCTGGAAAAGG.......................................................................................................................................................................................................2911.001.00------1.00--------------------------------------
...............................................................................................................................................................................................................................TCACCCAGGCTGGACTTCGG.......201.000.00----1.00----------------------------------------
.............................................................................................................................................................................................TTGTTGTTATTTTTCCAGACAGGG.....................................2411.001.00-----------------1.00---------------------------
..................ATATGATCTGTAACATGGAGGAGCTGG.............................................................................................................................................................................................................2711.001.00-------1.00-------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAGGG........................................................................................................191.000.001.00--------------------------------------------
................CCATATGATCTGTAACATGGAGGAGCTGG.............................................................................................................................................................................................................2911.001.00--------------------------1.00------------------
...............................................................................................................................TAGCAGCACGAAAAACCTG........................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAATAT........................................................................................................191.000.00-1.00-------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAACTG.........................................................................................................181.000.001.00--------------------------------------------
.............................................................................................................................................................................................................AGACAGGGTCTTGCTCTGTCACCCAGGCGGAC.............321.000.00----1.00----------------------------------------
...............................................................................................................................TAGCAGCACGAAAAATT..........................................................................................................171.000.00-1.00-------------------------------------------
...........TGTGCCCATATGATCTGTAACATGGAGGAGC................................................................................................................................................................................................................3111.001.00-------------------------1.00-------------------
...............................................................................................................................TAGCAGCACGAAAAATTCA........................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................TAGCAGCACGAAAAAAAT.........................................................................................................181.000.00-1.00-------------------------------------------
.....................................................................................................................................................................................................................................AGGCTGGACTACAGTGGTGCGGTC241.000.00-------------------------------------1.00-------
...............................................................................................................................TAGCAGCACGAAAAAACAG........................................................................................................191.000.00-1.00-------------------------------------------
....................ATGATCTGTAACATGGAGGAG.................................................................................................................................................................................................................2111.001.00------------------1.00--------------------------
....................................AGGAGCTGGAAAAGGTAAGCAGGTCT............................................................................................................................................................................................2611.001.00----1.00----------------------------------------
.......................ATCTGTAACATGGAGGAGCTGG.............................................................................................................................................................................................................2211.001.00------------1.00--------------------------------
..................................GGAGGAGCTGGAAAAGGGT.....................................................................................................................................................................................................191.000.00---------------------------1.00-----------------
......................GATCTGTAACATGGAGGAGCTGT.............................................................................................................................................................................................................231.000.00------1.00--------------------------------------
........................TCTGTAACATGGAGGAGC................................................................................................................................................................................................................1811.001.00--------------------------------------1.00------
.............................AACATGGAGGAGCTGGA............................................................................................................................................................................................................1730.670.67----------------------------------------0.67----
................................ATGGAGGAGCTGGAAAAG........................................................................................................................................................................................................1820.500.50------------------------------------------0.50--
.....................................................................................................................................................................................................ATTTTTCCAGACAGGGTCTTGC...............................2220.500.50-----0.50---------------------------------------
............................................................................................................................................................................ACATTTTTATTAAATTATTG..........................................................2020.500.50-------------------------------------------0.50-
...................TATGATCTGTAACATGG......................................................................................................................................................................................................................1720.500.50-----------------------------------------0.50---

Antisense strand
TTTTTACCACTTGTGCCCATATGATCTGTAACATGGAGGAGCTGGAAAAGGTAAGCAGGTCTTTGGATCAATAACAGACTTCATGCTTAAAAGTTTTATTCATGCAGAGCAGTGAGTCATTTCATGATAGCAGCACGAAAAAGCACACTAACCAGTATTAGAGATAGATTTAACATTTTTATTAAATTATTGTTGTTATTTTTCCAGACAGGGTCTTGCTCTGTCACCCAGGCTGGACTACAGTGGTGCA
...................................................((((((((((((((......))).)))))...))))))...(((((.(((.(((...((.(((((....)))))....)).))).))))))))..........................................................................................................
..................................................51.................................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................................................................CCAGGCTGGACTACATA...... 171.000.00--------------------1.00------------------------
..................................................................................................................................................................................................................GGGTCTTGCTCTGTCACCCAGGCTGGAGCCT......... 311.000.00----1.00----------------------------------------
.............................................................................................................................................................................................................................TGTCACCCAGGCTGGACTACAGTGGTGCA 291.000.00------------------------------------1.00--------
...............................................................................................................................................................................................................................TCACCCAGGCTGGACTG.......... 171.000.00----------------------1.00----------------------
.............................................................................................................................................................................................................................GCACCACTGTAGTCCAGCCTGGGTGACA. 2890.110.11--------------------------------------------0.11