ID: uc001gvv.2_intron_8_0_chr1_201017813_r
GENE: (35)
chr1:201017763-201018180-


(1)
AGO1.ip
(7)
B-CELL
(10)
BRAIN
(2)
BREAST
(13)
CELL-LINE
(4)
CERVIX
(6)
HEART
(1)
HELA
(5)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
AGCCCCCTCTGGGCTTTGGGAAGTTCTGCCCACATCGGGTAGCTTGTAAGGTAACCAGAGCTGCCAGGGATGGGTGGCCCCAGGGAGGGGAAGAGTCACTGAGGCAGAGGGAAACTGGTGAGGACCTGATGGAGTGAAGCATTGTAGAGCCGGGATCTCCTGGGTCCCCAAGTTCCTCCCAAAGGGCCTGAAGTCTCAGCAATGTCACCCAACTCATCATTCTGTCCCCTCACAAAGGATGTCCTGGTCAGCTGACACCCCCAGCCCTCGTGTCCCGTCCCCTCCCGGTCCACAGACCGGGTGAGGATGACTTGCCAAGCTTGGCCTGGTCCCAGCTCAGCGGCAGGCCACTGCGTCTCCCTGTACAGCGGCTGGTGGGCATGAACATGCCCCTGAACAGCGACGGCACAGTCACCTT
...............................................................................................................................((((((((((.(((((((.(((..((((((.....))))))..((..(((.....)))..)).....))).)))))))...........))))))))))................................................................................................................................................................................................
..............................................................................................................................127.........................................................................................................235.....................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040042(GSM532927)
G428N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029124(GSM416753)
HeLa. (hela)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR029127(GSM416756)
A549. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038859(GSM458542)
MM386. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR038860(GSM458543)
MM426. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................................GAGTGAAGCATTGTACTGT............................................................................................................................................................................................................................................................................1933.000.008.00-1.001.003.00-2.001.00--1.00-1.001.001.001.001.00-1.00-1.001.001.001.001.00---1.00-----1.00-1.00-1.00-----1.00-----------
...................................................................................................................................GAGTGAAGCATTGTACTTT............................................................................................................................................................................................................................................................................199.000.00-------1.001.00--1.001.00----------------1.00-----1.00-1.00----1.00------1.00------
...................................................................................................................................GAGTGAAGCATTGTACT..............................................................................................................................................................................................................................................................................177.000.00--1.003.00----1.00-----1.00------------------------------1.00----------
...................................................................................................................................GAGTGAAGCATTGTACTG.............................................................................................................................................................................................................................................................................185.000.003.00-1.00----------------------------1.00------------------------
...................................................................................................................................GAGTGAAGCATTGTACTTA............................................................................................................................................................................................................................................................................193.000.00-1.00-------1.001.00---------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAGTGTA...........................................................................................................................................................................................................................................................................203.000.00-3.00------------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAGTTCA...........................................................................................................................................................................................................................................................................202.000.00-2.00------------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAAAGC............................................................................................................................................................................................................................................................................192.000.00----2.00---------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAC...............................................................................................................................................................................................................................................................................162.000.00--2.00-----------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTACTA.............................................................................................................................................................................................................................................................................182.000.001.00-1.00-----------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTACTT.............................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------1.00--------
....................................................................................................................................................................................................................CTCATCATTCTGTCCTTTA...........................................................................................................................................................................................191.000.00-----1.00--------------------------------------------------
................................................................................................................................................TAGAGCCGGGATCTCGCCG...............................................................................................................................................................................................................................................................191.000.00---------------------------------------------------1.00----
........................................................................GGTGGCCCCAGGGAGGGTCGG.....................................................................................................................................................................................................................................................................................................................................211.000.00--------------------------1.00-----------------------------
...................................................................................................................................GAGTGAAGCATTGTAGAC.............................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------1.00-----
...................................................................................................................................GAGTGAAGCATTGTAGTTAC...........................................................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTACTCT............................................................................................................................................................................................................................................................................191.000.00----------------------------------------1.00---------------
...................................................................................................................................GAGTGAAGCATTGTAGCTC............................................................................................................................................................................................................................................................................191.000.00--1.00-----------------------------------------------------
.............................................................................................................................................................................................................CACCCAACTCATCATCTA...................................................................................................................................................................................................181.000.00-------------------1.00------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAATGT............................................................................................................................................................................................................................................................................191.000.00-----------1.00--------------------------------------------
.................................................................................................................................................................................................................................................TCCTGGTCAGCTGACACCCCCAG..........................................................................................................................................................2311.001.00-----------------1.00--------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAGTGCC...........................................................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTACA..............................................................................................................................................................................................................................................................................171.000.00--1.00-----------------------------------------------------
....................................................................................................................................AGTGAAGCATTGTAGTGTA...........................................................................................................................................................................................................................................................................191.000.00-1.00------------------------------------------------------
......................................................................................................................................TGAAGCATTGTAGAGCTATG........................................................................................................................................................................................................................................................................201.000.00-----1.00--------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAGTA.............................................................................................................................................................................................................................................................................181.000.00-1.00------------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTACTGC............................................................................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------------
...................................................................................................................................GAGTGAAGCATTGTAAGCT............................................................................................................................................................................................................................................................................191.000.00-------------------------------------------1.00------------
...................................................................................................................................GAGTGAAGCATTGTACTAC............................................................................................................................................................................................................................................................................191.000.00---------------------------------------1.00----------------
...................................................................................................................................................................................................................................................................................................................TGACTTGCCAAGCTTGCTG............................................................................................191.000.00---------1.00----------------------------------------------
.....................................................................................................AGGCAGAGGGAAACTCCGT..........................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------1.00-------
...................................................................................................................................GAGTGAAGCATTGTACTTC............................................................................................................................................................................................................................................................................191.000.00------------------------------1.00-------------------------
.....................................................................................AGGGGAAGAGTCACTGAG...........................................................................................................................................................................................................................................................................................................................1820.500.50------------------------------------------------------0.50-
.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGAACAGCGACGG............1520.500.50-----------------------------------------------------0.50--

Antisense strand
AGCCCCCTCTGGGCTTTGGGAAGTTCTGCCCACATCGGGTAGCTTGTAAGGTAACCAGAGCTGCCAGGGATGGGTGGCCCCAGGGAGGGGAAGAGTCACTGAGGCAGAGGGAAACTGGTGAGGACCTGATGGAGTGAAGCATTGTAGAGCCGGGATCTCCTGGGTCCCCAAGTTCCTCCCAAAGGGCCTGAAGTCTCAGCAATGTCACCCAACTCATCATTCTGTCCCCTCACAAAGGATGTCCTGGTCAGCTGACACCCCCAGCCCTCGTGTCCCGTCCCCTCCCGGTCCACAGACCGGGTGAGGATGACTTGCCAAGCTTGGCCTGGTCCCAGCTCAGCGGCAGGCCACTGCGTCTCCCTGTACAGCGGCTGGTGGGCATGAACATGCCCCTGAACAGCGACGGCACAGTCACCTT
...............................................................................................................................((((((((((.(((((((.(((..((((((.....))))))..((..(((.....)))..)).....))).)))))))...........))))))))))................................................................................................................................................................................................
..............................................................................................................................127.........................................................................................................235.....................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040042(GSM532927)
G428N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029124(GSM416753)
HeLa. (hela)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR029127(GSM416756)
A549. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038859(GSM458542)
MM386. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR038860(GSM458543)
MM426. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................GAAGCATTGTAGAGCGATC........................................................................................................................................................................................................................................................................ 191.000.00--------------------------------1.00-----------------------
.........................................................................................................CCTCACCAGTTTCCCTCT....................................................................................................................................................................................................................................................................................................... 1811.001.00----------------------------------------------1.00---------
......................................................................................................................................................................................................................................................................................................................................................................CCCTGTACAGCGGCTCTAT......................................... 191.000.00---------------------------1.00----------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................CCCCTGAACAGCGACGGAC.......... 191.000.00-------------1.00------------------------------------------
...................................................................................................................................................................................................................................................................CCCAGCCCTCGTGTCCCGTT........................................................................................................................................... 201.000.00-----------------------------------------1.00--------------
................................................................................................................................................................................................................................................................................................................................TTGGCCTGGTCCCAGTGC................................................................................ 181.000.00--1.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCTGAACAGCGGTT............. 181.000.00---------------------------------1.00----------------------
...................................................................................................................................................................................................................ACTCATCATTCTGTCCCTAG........................................................................................................................................................................................... 201.000.00-----1.00--------------------------------------------------
.........................................................................................................CAGGTCCTCACCAGTTTCCCTCT.................................................................................................................................................................................................................................................................................................. 2311.001.00-------------------------1.00------------------------------
.................................................................................................................................CAATGCTTCACTCCA.................................................................................................................................................................................................................................................................................. 1560.830.83------0.17--------0.17------------------------------------0.33--0.17
.............................................................................................................................TGCTTCACTCCATCAG..................................................................................................................................................................................................................................................................................... 1650.400.40----------------------------------------------------0.40---
..................................................................................................................................................................GAGGAACTTGGGGACC................................................................................................................................................................................................................................................ 1650.200.20------0.20-------------------------------------------------