ID: uc001gvd.1_intron_0_0_chr1_200312539_r.3p
GENE: C1orf98(4)
chr1:200312489-200312738-


(5)
CELL-LINE
(1)
CERVIX
(1)
LIVER
(1)
OTHER

Sense strand
CCCCCTTTCTAAACCATTTGAAAGTAAGATGCAGTCACTGTGGCCTTTGCATTTAAGTAACTGTGAAGAATAGGAATATTTTCCTACATAACCATAATATAATTATTACATAATGAAATTTAACCTTGGTATTATACCGTTACCGAACATACAGTCTATATTTGCTCTTCATAGCTCTTTTTTTTTTTTTTTGATTCCAGGATCCAGTTGAAAATCAGGCATTGCATCCAGTTATCATGGCTTTAATCTT
......................................................................((((((....)))))).........((((((.(((((....))))).........((((((.........))))))..........)))))).(((......)))...........................................................................
......................................................................71.........................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189785SRR040012(GSM532897)
G648N. (cervix)
SRR189786SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR343334SRR343335SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTGC............................................................1992.000.0074.0018.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCTGC.......................................................2349.000.0047.002.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCTGC........................................................2242.000.0042.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAG......................................................2441.000.0037.004.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCGC........................................................2239.000.0037.002.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCTGC........................................................2334.000.0028.006.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCGC.........................................................2132.000.0031.001.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGCAG.......................................................2325.000.0023.002.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTGC......................................................2521.000.0015.006.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTGCAG.........................................................2121.000.0020.001.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCTGC.......................................................2421.000.0015.006.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCGC.......................................................2420.000.0016.004.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCTGC..........................................................2118.000.0014.004.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCTGC.........................................................2218.000.0014.004.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCGC........................................................2318.000.0012.006.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCGC.........................................................2214.000.0013.001.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCGC...........................................................2013.000.0010.003.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCGC..........................................................2110.000.008.002.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGCAG.......................................................2410.000.007.001.002.00----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTGCAG.........................................................2210.000.008.002.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGC.......................................................237.000.007.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTGCAG..........................................................217.000.007.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCGC.......................................................246.000.006.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAGT.....................................................256.000.005.001.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCCGC.......................................................235.000.005.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCC.........................................................225.000.005.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCCC.......................................................245.000.003.002.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCCCC.......................................................234.000.003.001.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTTT......................................................254.000.004.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCC........................................................234.000.003.001.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTGGC...........................................................194.000.004.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAGC.....................................................254.000.004.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCC.........................................................223.000.001.002.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCC..........................................................213.000.003.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCGGC........................................................233.000.003.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCAG......................................................2562.502.002.170.33-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTG.........................................................2262.002.001.000.500.170.17--------0.17
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCCC........................................................232.000.001.001.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCCCC..........................................................212.000.001.001.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCT........................................................232.000.001.001.00-----------
.............................................................................................................................................................................GCTCTTTTTTTTTTTTTTGCAG.......................................................222.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCTC...........................................................202.000.001.001.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTAAGC............................................................192.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCTTG.........................................................222.000.002.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGGC.........................................................212.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCC...........................................................202.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCGC........................................................232.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTATGC..........................................................212.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGCT........................................................232.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTATT.......................................................242.000.001.001.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGG........................................................222.000.001.001.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGGC......................................................242.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTGGC..........................................................212.000.001.001.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCGGC.......................................................232.000.002.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCTC.......................................................241.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGCGG.......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTACCC......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCGT........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTATG........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCCAC........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTGGG..........................................................201.000.001.00------------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTAGTT..........................................................221.000.00-1.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCTC..........................................................211.000.00-1.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTTC......................................................251.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTGGC..........................................................201.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGTGA.......................................................231.000.00--------1.00----
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCGCA......................................................251.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGACG........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTGAGG.........................................................211.000.00-1.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCCCG........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTAAGC......................................................241.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTCT......................................................251.000.001.00------------
.....................................................................................................................................................................................................................................AGTTATCATGGCTTTGGG...181.000.00-1.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGTC......................................................241.000.001.00------------
................................................................................................................................................................TTTGCTCTTCATAGCTACTC......................................................................201.000.00----1.00--------
.....................................................................................................................................................................................TTTTTTTTTTTGATTCTGTT.................................................201.000.00--1.00----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGGGC.......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGGG.......................................................231.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCT........................................................231.000.00-1.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCTCG..........................................................211.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTAGC.............................................................181.000.001.00------------
.............................................................................................................................................................................GCTCTTTTTTTTTTTTTTTGTAAC.....................................................241.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGT.........................................................221.000.001.00------------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTTGGGG......................................................261.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCAGG......................................................251.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCG.......................................................231.000.00-1.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTGCCC.........................................................211.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGGGG........................................................221.000.00-1.00-----------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTATGA.......................................................251.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGAA.......................................................231.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCTCC........................................................231.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCTC........................................................231.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCTCC........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGGTG........................................................221.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGTTT......................................................241.000.001.00------------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTGTC.........................................................231.000.00-1.00-----------
...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATTCCG...................................................241.000.00---1.00---------
..............................................................................................................................................................................CTCTTTTTTTTTTTTTTTGATTTAAG..................................................261.000.00------1.00------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTGGC.........................................................221.000.00-1.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTATA.......................................................231.000.00---1.00---------
.....................................................................................................................................................................................TTTTTTTTTTTGATTCCGGC.................................................201.000.00--1.00----------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTAGTT.........................................................231.000.00-1.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCG..........................................................211.000.00--1.00----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTGGAG...........................................................201.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGAAG......................................................241.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTT.......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGCGC.......................................................231.000.00-1.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCCGC........................................................221.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTCC......................................................251.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCAG.......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGT.......................................................231.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTGGTC.........................................................211.000.001.00------------
...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATGGC....................................................231.000.001.00------------
...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATTCTTTT.................................................261.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCGGC.......................................................241.000.001.00------------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTTAACC......................................................261.000.00-1.00-----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTATGC.........................................................211.000.001.00------------
..........AAACCATTTGAAAGTAACCT............................................................................................................................................................................................................................201.000.00----1.00--------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTATGC.......................................................231.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGGG........................................................231.000.00--1.00----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCCGC......................................................251.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCGT.........................................................211.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGCAG.....................................................251.000.001.00------------
.....................................................................................................................................................................TCTTCATAGCTCTTTTTTTTT................................................................2111.001.001.00------------
...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATCCT....................................................231.000.00--1.00----------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTCTGA.......................................................251.000.00--1.00----------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGC........................................................221.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTGCAC.........................................................221.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTAC........................................................231.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAGG.....................................................251.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGATT......................................................2511.001.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTATC........................................................231.000.001.00------------
...................GAAAGTAAGATGCAGTCACT...................................................................................................................................................................................................................2011.001.00---------1.00---
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGTG......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCCG......................................................241.000.001.00------------
........................................................................................................................................................................TCATAGCTCTTTTTTTTTTTTTTGGG........................................................261.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTATCT.......................................................231.000.00-1.00-----------
..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTAGAC.......................................................251.000.00-1.00-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTGTGC........................................................231.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTATGC......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGGA......................................................241.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCCG.......................................................241.000.001.00------------
............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTACC.......................................................231.000.001.00------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCAGT.....................................................2660.832.00-0.83-----------
...........................................................................ATATTTTCCTACATAACC.............................................................................................................................................................1830.670.67----------0.330.33-
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGG........................................................2360.502.000.33-0.17----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCA.......................................................2460.332.000.33------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGA........................................................2350.200.200.20------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGT........................................................2360.172.000.17------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGTT.......................................................2460.172.00-0.17-----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGGGC......................................................2560.172.000.17------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGTAG......................................................2560.172.00--0.17----------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCAA......................................................2560.172.000.17------------
...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCT.......................................................2460.172.00-0.17-----------

Antisense strand
CCCCCTTTCTAAACCATTTGAAAGTAAGATGCAGTCACTGTGGCCTTTGCATTTAAGTAACTGTGAAGAATAGGAATATTTTCCTACATAACCATAATATAATTATTACATAATGAAATTTAACCTTGGTATTATACCGTTACCGAACATACAGTCTATATTTGCTCTTCATAGCTCTTTTTTTTTTTTTTTGATTCCAGGATCCAGTTGAAAATCAGGCATTGCATCCAGTTATCATGGCTTTAATCTT
......................................................................((((((....)))))).........((((((.(((((....))))).........((((((.........))))))..........)))))).(((......)))...........................................................................
......................................................................71.........................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189785SRR040012(GSM532897)
G648N. (cervix)
SRR189786SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR343334SRR343335SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................CTTCATAGCTCTTTTGTTA................................................................. 191.000.00-----1.00-------
........................................................................................................................................................................................TCCTGGAATCAAAAAAAA................................................ 1811.001.00-------1.00-----
......................................................................................................................................................................................................................AACTGGATGCAATGCCTGA................. 1920.500.50-0.50-----------