| (5) CELL-LINE | (1) CERVIX | (1) LIVER | (1) OTHER |
| CCCCCTTTCTAAACCATTTGAAAGTAAGATGCAGTCACTGTGGCCTTTGCATTTAAGTAACTGTGAAGAATAGGAATATTTTCCTACATAACCATAATATAATTATTACATAATGAAATTTAACCTTGGTATTATACCGTTACCGAACATACAGTCTATATTTGCTCTTCATAGCTCTTTTTTTTTTTTTTTGATTCCAGGATCCAGTTGAAAATCAGGCATTGCATCCAGTTATCATGGCTTTAATCTT ......................................................................((((((....)))))).........((((((.(((((....))))).........((((((.........))))))..........)))))).(((......)))........................................................................... ......................................................................71.........................................................................................................................194...................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189782 | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR189785 | SRR040012(GSM532897) G648N. (cervix) | SRR189786 | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR343334 | SRR343335 | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTGC............................................................ | 19 | 92.00 | 0.00 | 74.00 | 18.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCTGC....................................................... | 23 | 49.00 | 0.00 | 47.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCTGC........................................................ | 22 | 42.00 | 0.00 | 42.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAG...................................................... | 24 | 41.00 | 0.00 | 37.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCGC........................................................ | 22 | 39.00 | 0.00 | 37.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCTGC........................................................ | 23 | 34.00 | 0.00 | 28.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCGC......................................................... | 21 | 32.00 | 0.00 | 31.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGCAG....................................................... | 23 | 25.00 | 0.00 | 23.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTGC...................................................... | 25 | 21.00 | 0.00 | 15.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTGCAG......................................................... | 21 | 21.00 | 0.00 | 20.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCTGC....................................................... | 24 | 21.00 | 0.00 | 15.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCGC....................................................... | 24 | 20.00 | 0.00 | 16.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCTGC.......................................................... | 21 | 18.00 | 0.00 | 14.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCTGC......................................................... | 22 | 18.00 | 0.00 | 14.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCGC........................................................ | 23 | 18.00 | 0.00 | 12.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCGC......................................................... | 22 | 14.00 | 0.00 | 13.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCGC........................................................... | 20 | 13.00 | 0.00 | 10.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCGC.......................................................... | 21 | 10.00 | 0.00 | 8.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGCAG....................................................... | 24 | 10.00 | 0.00 | 7.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTGCAG......................................................... | 22 | 10.00 | 0.00 | 8.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGC....................................................... | 23 | 7.00 | 0.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTGCAG.......................................................... | 21 | 7.00 | 0.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCGC....................................................... | 24 | 6.00 | 0.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAGT..................................................... | 25 | 6.00 | 0.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCCGC....................................................... | 23 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCC......................................................... | 22 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCCC....................................................... | 24 | 5.00 | 0.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCCCC....................................................... | 23 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTTT...................................................... | 25 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCC........................................................ | 23 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTGGC........................................................... | 19 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAGC..................................................... | 25 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCC......................................................... | 22 | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCC.......................................................... | 21 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCGGC........................................................ | 23 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCAG...................................................... | 25 | 6 | 2.50 | 2.00 | 2.17 | 0.33 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTG......................................................... | 22 | 6 | 2.00 | 2.00 | 1.00 | 0.50 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | 0.17 |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCCC........................................................ | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCCCC.......................................................... | 21 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCT........................................................ | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................GCTCTTTTTTTTTTTTTTGCAG....................................................... | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCTC........................................................... | 20 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTAAGC............................................................ | 19 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCTTG......................................................... | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGGC......................................................... | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCC........................................................... | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCGC........................................................ | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTATGC.......................................................... | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGCT........................................................ | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTATT....................................................... | 24 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGG........................................................ | 22 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGGC...................................................... | 24 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTGGC.......................................................... | 21 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCGGC....................................................... | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCTC....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGCGG....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTACCC...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTCGT........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTATG........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCCAC........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTGGG.......................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTAGTT.......................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTCTC.......................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTTC...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTGGC.......................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGTGA....................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCGCA...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGACG........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTGAGG......................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCCCG........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTAAGC...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTCT...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................AGTTATCATGGCTTTGGG... | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGTC...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................TTTGCTCTTCATAGCTACTC...................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTTTTTTTTTGATTCTGTT................................................. | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGGGC....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGGG....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCT........................................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTCTCG.......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTAGC............................................................. | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................GCTCTTTTTTTTTTTTTTTGTAAC..................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGT......................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTTGGGG...................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCAGG...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCG....................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTGCCC......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGGGG........................................................ | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTATGA....................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGAA....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCTCC........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCCTC........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCTCC........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTGGTG........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGTTT...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTGTC......................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATTCCG................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................CTCTTTTTTTTTTTTTTTGATTTAAG.................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTGGC......................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTATA....................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTTTTTTTTTGATTCCGGC................................................. | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTAGTT......................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTCG.......................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTGGAG........................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGAAG...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTT....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGCGC....................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCCGC........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCTCC...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCCAG....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGT....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTGGTC......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATGGC.................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATTCTTTT................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTCGGC....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTTAACC...................................................... | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTATGC......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........AAACCATTTGAAAGTAACCT............................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTATGC....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTGGG........................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCCGC...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTCGT......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGCAG..................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................TCTTCATAGCTCTTTTTTTTT................................................................ | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TCTTTTTTTTTTTTTTTGATCCT.................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTCTGA....................................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTGGC........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTGCAC......................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTAC........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCAGG..................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGATT...................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTATC........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................GAAAGTAAGATGCAGTCACT................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGTG...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGCCG...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TCATAGCTCTTTTTTTTTTTTTTGGG........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTATCT....................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATAGCTCTTTTTTTTTTTTTTAGAC....................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTGTGC........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTATGC...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTGGGA...................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTCCG....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AGCTCTTTTTTTTTTTTTTTACC....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCAGT..................................................... | 26 | 6 | 0.83 | 2.00 | - | 0.83 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................ATATTTTCCTACATAACC............................................................................................................................................................. | 18 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | 0.33 | 0.33 | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGG........................................................ | 23 | 6 | 0.50 | 2.00 | 0.33 | - | 0.17 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCA....................................................... | 24 | 6 | 0.33 | 2.00 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGA........................................................ | 23 | 5 | 0.20 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGT........................................................ | 23 | 6 | 0.17 | 2.00 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGTT....................................................... | 24 | 6 | 0.17 | 2.00 | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGGGC...................................................... | 25 | 6 | 0.17 | 2.00 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGTAG...................................................... | 25 | 6 | 0.17 | 2.00 | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCAA...................................................... | 25 | 6 | 0.17 | 2.00 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGCTCTTTTTTTTTTTTTTTGCT....................................................... | 24 | 6 | 0.17 | 2.00 | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - |
| CCCCCTTTCTAAACCATTTGAAAGTAAGATGCAGTCACTGTGGCCTTTGCATTTAAGTAACTGTGAAGAATAGGAATATTTTCCTACATAACCATAATATAATTATTACATAATGAAATTTAACCTTGGTATTATACCGTTACCGAACATACAGTCTATATTTGCTCTTCATAGCTCTTTTTTTTTTTTTTTGATTCCAGGATCCAGTTGAAAATCAGGCATTGCATCCAGTTATCATGGCTTTAATCTT ......................................................................((((((....)))))).........((((((.(((((....))))).........((((((.........))))))..........)))))).(((......)))........................................................................... ......................................................................71.........................................................................................................................194...................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189782 | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR189785 | SRR040012(GSM532897) G648N. (cervix) | SRR189786 | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR343334 | SRR343335 | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................CTTCATAGCTCTTTTGTTA................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................TCCTGGAATCAAAAAAAA................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......................................................................................................................................................................................................................AACTGGATGCAATGCCTGA................. | 19 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |