uc001gtu.2_intron_19_0_chr1_197098448

TACTTGTCCCATAGAGATATTGGGAGGATTAAATGGATTTATACACATAAAGCACTAAAAAAGGCACATAGTGTTTTATTTGTGCTTGCTACCCTACACTTTTTGTTTTACTAACACCTTATTATTATTATTATCATATTTTAAGATGAAACCTACCTTTCATAGATTAACTTGCTGTGCTTTTTTGTACTTTATTTAAGGTCATGAAGAAGCTTTGTCCAAGTTTACATTGAAAAAGTTATTGTTGTTG .......................................................................................................((((.....))))........................((((.((((((......))))))...))))................................................................................ ....................................................................................................101................................................................................184................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189782	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR029124(GSM416753) HeLa. (hela)	SRR189787	SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin)	SRR189785	GSM359178(GSM359178) hela_nucl_t. (hela)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................TTTTACTAACACCTTATTATTATTATTA.....................................................................................................................	28	1	29.00	29.00	11.00	9.00	5.00	3.00	1.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................TTTTACTAACACCTTATTATTATTA........................................................................................................................	25	1	13.00	13.00	7.00	5.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................TTTACTAACACCTTATTATTATTATTA.....................................................................................................................	27	1	7.00	7.00	1.00	-	4.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-
.........................................................................................................TTTTACTAACACCTTATTATTATTACTA.....................................................................................................................	28	1	5.00	13.00	-	-	3.00	2.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................TTTTACTAACACCTTATTATTATTATCA.....................................................................................................................	28		4.00	0.00	-	-	1.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................ACACTTTTTGTTTTAGCTT........................................................................................................................................	19		3.00	0.00	-	-	-	-	3.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................TTTTACTAACACCTTATTATTA...........................................................................................................................	22	1	3.00	3.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................TTTACTAACACCTTATTATTATTA........................................................................................................................	24	1	2.00	2.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................ACTAACACCTTATTATTATTATTA.....................................................................................................................	24	1	2.00	2.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................TAACACCTTATTATTATTATTA.....................................................................................................................	22	1	2.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................TACTAACACCTTATTATTATTATTA.....................................................................................................................	25	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................................TTAAGGTCATGAAGAAGCTTTG.................................	22	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-
.................................................................................................................ACACCTTATTATTATTATTATCATATTTTA...........................................................................................................	30	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
...........................ATTAAATGGATTTATGGAG............................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00
....................................................................................................................CCTTATTATTATTATTATCTTG................................................................................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................ATAGATTAACTTGCTGTGCTTTTTTG...............................................................	26	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-
.........................................................................................................TTTTACTAACACCTTA.................................................................................................................................	16	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................TTACTAACACCTTATTATTATTATTA.....................................................................................................................	26	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................TTTTACTAACACCTTAT................................................................................................................................	17	1	1.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CTTATTATTATTATTATCATATTTTAAG.........................................................................................................	28	1	1.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................AACACCTTATTATTATTATTATCATATTTTAAG.........................................................................................................	33	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................................................GTCATGAAGAAGCTTTGTCCAAG...........................	23	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
......................................................................................TGCTACCCTACACTTTTTGTTTCACT..........................................................................................................................................	26		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
............................................................................................................TACTAACACCTTATTATTATTATCA.....................................................................................................................	25		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CTTATTATTATTATTATCATTAG..............................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................AACACCTTATTATTATC.........................................................................................................................	17		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................TTTTACTAACACCTTATTATTATTACCA.....................................................................................................................	28	1	1.00	13.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................TTATTATTATTATTATCATATTTTAAG.........................................................................................................	27	1	1.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................TTTCATAGATTAACTTGCTGCGC......................................................................	23		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
................................................................................................................AACACCTTATTATTATTATTATCATATTTTAAT.........................................................................................................	33		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................CTTGCTGTGCTTTTTTGTACT...........................................................	21	1	1.00	1.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
.....................................................................................................................CTTATTATTATTATTATAAAC................................................................................................................	21		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
....................................................................................................................CCTTATTATTATTATTATG...................................................................................................................	19		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACCTTATTATTATTATTATCATAAG..............................................................................................................	25		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
............................TTAAATGGATTTATATGA............................................................................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.........................................................................................................TTTTACTAACACCTTATTATTATTCA.......................................................................................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...............................................................................TTGTGCTTGCTACCCATG.........................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..............................................................................................................CTAACACCTTATTATTATTATTA.....................................................................................................................	23	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-

TACTTGTCCCATAGAGATATTGGGAGGATTAAATGGATTTATACACATAAAGCACTAAAAAAGGCACATAGTGTTTTATTTGTGCTTGCTACCCTACACTTTTTGTTTTACTAACACCTTATTATTATTATTATCATATTTTAAGATGAAACCTACCTTTCATAGATTAACTTGCTGTGCTTTTTTGTACTTTATTTAAGGTCATGAAGAAGCTTTGTCCAAGTTTACATTGAAAAAGTTATTGTTGTTG
.......................................................................................................((((.....))))........................((((.((((((......))))))...))))................................................................................
....................................................................................................101................................................................................184................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189782

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR029124(GSM416753)
HeLa. (hela)

SRR189787

SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)

SRR189785

GSM359178(GSM359178)
hela_nucl_t. (hela)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

.........................................................................................................TTTTACTAACACCTTATTATTATTATTA.....................................................................................................................

29.00

11.00

9.00

5.00

3.00

1.00

.........................................................................................................TTTTACTAACACCTTATTATTATTA........................................................................................................................

13.00

7.00

5.00

1.00

..........................................................................................................TTTACTAACACCTTATTATTATTATTA.....................................................................................................................

7.00

1.00

4.00

1.00

.........................................................................................................TTTTACTAACACCTTATTATTATTACTA.....................................................................................................................

5.00

13.00

3.00

2.00

.........................................................................................................TTTTACTAACACCTTATTATTATTATCA.....................................................................................................................

4.00

0.00

1.00

2.00

...............................................................................................ACACTTTTTGTTTTAGCTT........................................................................................................................................

3.00

0.00

3.00

.........................................................................................................TTTTACTAACACCTTATTATTA...........................................................................................................................

3.00

1.00

2.00

..........................................................................................................TTTACTAACACCTTATTATTATTA........................................................................................................................

2.00

1.00

.............................................................................................................ACTAACACCTTATTATTATTATTA.....................................................................................................................

2.00

1.00

...............................................................................................................TAACACCTTATTATTATTATTA.....................................................................................................................

2.00

............................................................................................................TACTAACACCTTATTATTATTATTA.....................................................................................................................

1.00

...................................................................................................................................................................................................TTAAGGTCATGAAGAAGCTTTG.................................

1.00

.................................................................................................................ACACCTTATTATTATTATTATCATATTTTA...........................................................................................................

1.00

...........................ATTAAATGGATTTATGGAG............................................................................................................................................................................................................

1.00

0.00

1.00

....................................................................................................................CCTTATTATTATTATTATCTTG................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................ATAGATTAACTTGCTGTGCTTTTTTG...............................................................

1.00

.........................................................................................................TTTTACTAACACCTTA.................................................................................................................................

1.00

...........................................................................................................TTACTAACACCTTATTATTATTATTA.....................................................................................................................

1.00

.........................................................................................................TTTTACTAACACCTTAT................................................................................................................................

1.00

.....................................................................................................................CTTATTATTATTATTATCATATTTTAAG.........................................................................................................

1.00

................................................................................................................AACACCTTATTATTATTATTATCATATTTTAAG.........................................................................................................

1.00

........................................................................................................................................................................................................GTCATGAAGAAGCTTTGTCCAAG...........................

1.00

......................................................................................TGCTACCCTACACTTTTTGTTTCACT..........................................................................................................................................

1.00

0.00

1.00

............................................................................................................TACTAACACCTTATTATTATTATCA.....................................................................................................................

1.00

0.00

1.00

.....................................................................................................................CTTATTATTATTATTATCATTAG..............................................................................................................

1.00

0.00

1.00

................................................................................................................AACACCTTATTATTATC.........................................................................................................................

1.00

0.00

1.00

.........................................................................................................TTTTACTAACACCTTATTATTATTACCA.....................................................................................................................

1.00

13.00

1.00

......................................................................................................................TTATTATTATTATTATCATATTTTAAG.........................................................................................................

1.00

.............................................................................................................................................................TTTCATAGATTAACTTGCTGCGC......................................................................

1.00

0.00

1.00

................................................................................................................AACACCTTATTATTATTATTATCATATTTTAAT.........................................................................................................

1.00

0.00

1.00

..........................................................................................................................................................................CTTGCTGTGCTTTTTTGTACT...........................................................

1.00

.....................................................................................................................CTTATTATTATTATTATAAAC................................................................................................................

1.00

0.00

1.00

....................................................................................................................CCTTATTATTATTATTATG...................................................................................................................

1.00

0.00

1.00

...................................................................................................................ACCTTATTATTATTATTATCATAAG..............................................................................................................

1.00

0.00

1.00

............................TTAAATGGATTTATATGA............................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................TTTTACTAACACCTTATTATTATTCA.......................................................................................................................

1.00

0.00

1.00

...............................................................................TTGTGCTTGCTACCCATG.........................................................................................................................................................

1.00

0.00

1.00

..............................................................................................................CTAACACCTTATTATTATTATTA.....................................................................................................................

1.00