ID: uc001grw.2_intron_3_0_chr1_186355216_f.3p
GENE: (4)
chr1:186357374-186357623+


(1)
AGO2.ip
(1)
BRAIN
(1)
BREAST
(15)
CELL-LINE
(1)
FIBROBLAST
(2)
HEART
(1)
OTHER
(7)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GAAGCTGAGGTGAGAGAATCACTTGAGCCCAGGTGTTCAAGGCCAGCTTGAGCAACATAGTGAGACCCCTTCTCCAATAAATAAAGAATCATGGAATTTTAAAGCTAAATGAGAGTTGGGGACATTATAATTGCCTATTTCAACACTCATCTTTTTTTTTCATTTTACATTCAATTAGTGTGTATTTTTCTCTCTTTCAGCTAATGTTTGCTGTGGAAAAGTCTATAAATAGAAAGAGATTGTGGAATTT
.....................................................................................................................................................................((((((.....))))))....................................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
...................................................................................................................................................CATCTTTTTTTTTCATTTATTG.................................................................................2252.000.0017.0016.0011.008.00--------------------------
...................................................................................................................................................CATCTTTTTTTTTCATTTATT..................................................................................215.000.002.001.00-1.00------1.00-------------------
..................................................................................................................................................................................................................................AAATAGAAAGAGATTGTGGAATT.2314.004.00----4.00-------------------------
................................................................................................................................................ACTCATCTTTTTTTTTAG........................................................................................183.000.00-1.00-2.00--------------------------
...................................................................................................................................................CATCTTTTTTTTTCAAAG.....................................................................................183.000.00-1.001.001.00--------------------------
...................................................................................................................................................................................................................................AATAGAAAGAGATTGTGG.....1813.003.00------2.00------------------1.00----
...............................................................................................................................................................................................................................TATAAATAGAAAGAGATTGTGGAATT.2612.002.00-----1.00------------1.00-----------
......................................................................................................................................................CTTTTTTTTTCATTTTACATTCAATTAG........................................................................2812.002.00--2.00---------------------------
...................................................................................................................................................................................................................................AATAGAAAGAGATTGTGGA....1912.002.00----1.00----------------------1.00--
...................................................................................................................................................CATCTTTTTTTTTCATTTATTA.................................................................................222.000.001.001.00----------------------------
.............................................................................................................................................................................ATTAGTGTGTATTTTTCTCTCTCAGC...................................................261.000.00---------1.00--------------------
...............................................................................................................................................CACTCATCTTTTTTTTTTTG.......................................................................................201.000.001.00-----------------------------
..............................................................................................................................................ACACTCATCTTTTTTTTTTTG.......................................................................................211.000.00----------1.00-------------------
....................................................................................................................................................ATCTTTTTTTTTCATTTCG...................................................................................191.000.00---1.00--------------------------
............................................................................................................................................................................................................TGTTTGCTGTGGAAAAGTAA..........................201.000.00---------------------1.00--------
...............................................................................................................................................................................................................................TATAAATAGAAAGAGATTGTGGAAT..2511.001.00-----1.00------------------------
..............................................................................................................................................ACACTCATCTTTTTTTTCG.........................................................................................191.000.00--1.00---------------------------
...................................................................................................................................................CATCTTTTTTTTTCAACAG....................................................................................191.000.00--1.00---------------------------
.............................................................................................................................................AACACTCATCTTTTTTTTTTCCG......................................................................................231.000.00--1.00---------------------------
....................................................................................................................................................ATCTTTTTTTTTCATTTCAAG.................................................................................211.000.00---1.00--------------------------
....................................................................................................................................................................................................................................ATAGAAAGAGATTGTGGAAT..2011.001.00--------1.00---------------------
...................................................................................................................................................................................................................................AATAGAAAGAGATTGTGGAAT..2111.001.00---------------1.00--------------
................................................................................................................................................................................AGTGTGTATTTTTCTAAT........................................................181.000.00-----------------------1.00------
................................................TGAGCAACATAGTGAGAAGAA.....................................................................................................................................................................................211.000.00------------------------1.00-----
...............................................TTGAGCAACATAGTGAGACCCGTC...................................................................................................................................................................................241.000.00---------1.00--------------------
......................................................................................................................................................CTTTTTTTTTCATTTTCTCG................................................................................201.000.00---1.00--------------------------
...................................................................................................................................................CATCTTTTTTTTTCATTTCTTG.................................................................................221.000.00---1.00--------------------------
...................................................................................................................................................................................................................TGTGGAAAAGTCTATAAATAG..................2111.001.00-----------1.00------------------
.................................................................................................................................................................................................................................TAAATAGAAAGAGATTGTGGAATTT2511.001.00----------------------------1.00-
...................................................................................................................................................CATCTTTTTTTTTCATTTACTG.................................................................................221.000.001.00-----------------------------
....................................................................................................................................................ATCTTTTTTTTTCATATTG...................................................................................191.000.001.00-----------------------------
..............................................................................................................................................ACACTCATCTTTTTTTTTTATG......................................................................................221.000.00-1.00----------------------------
.....................................................................................................................................................TCTTTTTTTTTCATTTTCTA.................................................................................201.000.00-------1.00----------------------
...............................................................................................................................................................................................................................TATAAATAGAAAGAGATTGTGGAA...2411.001.00------1.00-----------------------
............................................................................................................................................................................................................TGTTTGCTGTGGAAAAGTC...........................1911.001.00------------1.00-----------------
................................................................................................................................................................................................................................ATAAATAGAAAGAGATTGTGGAATT.2511.001.00--------1.00---------------------
.............................................................................................................................................................TTTCATTTTACATTCAACT..........................................................................191.000.00-------1.00----------------------
.................................................................................................................................................CTCATCTTTTTTTTTCATTTTTTG.................................................................................241.000.00-1.00----------------------------
......................................................................................................................................................CTTTTTTTTTCATTTTACATTCAATCAG........................................................................281.000.00--1.00---------------------------
........................................................................................................................................................................................................CTAATGTTTGCTGTGGAAA...............................1911.001.00-----------------1.00------------
...................................................................................................................................................CATCTTTTTTTTTCATAAG....................................................................................191.000.00--1.00---------------------------
.................................................................................................................................................................................................................................TAAATAGAAAGAGATTGTGG.....2011.001.00----------------1.00-------------
.............................................................................................................................................AACACTCATCTTTTTTTTTTTTG......................................................................................231.000.00---1.00--------------------------
.........................................................................................................................................................................................................................AAAGTCTATAAATAGAAAGAGATTGTGG.....2811.001.00--------------------------1.00---
.........................................................................................................................................................................................................TAATGTTTGCTGTGGAAAAGTCTAT........................2511.001.00-----1.00------------------------
....................................................................................................................................................................................................................................ATAGAAAGAGATTGTG......1680.120.12-----0.12------------------------

Antisense strand
GAAGCTGAGGTGAGAGAATCACTTGAGCCCAGGTGTTCAAGGCCAGCTTGAGCAACATAGTGAGACCCCTTCTCCAATAAATAAAGAATCATGGAATTTTAAAGCTAAATGAGAGTTGGGGACATTATAATTGCCTATTTCAACACTCATCTTTTTTTTTCATTTTACATTCAATTAGTGTGTATTTTTCTCTCTTTCAGCTAATGTTTGCTGTGGAAAAGTCTATAAATAGAAAGAGATTGTGGAATTT
.....................................................................................................................................................................((((((.....))))))....................................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
.AAGCTGAGGTGAGAGAGCG...................................................................................................................................................................................................................................... 191.000.00----------------------1.00-------
..............AGAATCACTTGAGCCCATCAA....................................................................................................................................................................................................................... 211.000.00-------------1.00----------------
..........TGGGCTCAAGTGATTCTCTCA........................................................................................................................................................................................................................... 2101.001.00--------------1.00---------------
................................GTGTTCAAGGCCAGCTTTTGA..................................................................................................................................................................................................... 211.000.00-------------------1.00----------
.........................................................................................................................................TTTCAACACTCATCTATCT.............................................................................................. 191.000.00--------------------1.00---------
.............................................................................................................................................................................................................................TCTATAAATAGAAAGTGCT.......... 191.000.00-------1.00----------------------
...........................................................TTGGAGAAGGGGTCTCAC............................................................................................................................................................................. 1870.140.14-----------------------------0.14