ID: uc001gpr.2_intron_1_0_chr1_182811813_f.3p
GENE: (2)
chr1:182812229-182812478+


(2)
B-CELL
(2)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(2)
HELA
(3)
LIVER
(2)
OTHER
(3)
SKIN

Sense strand
CACTTAAATTATTTTTGGATACAACACAATTTAAGCTTTTTCAGTAGCTCATGCATTCTCTTATTTTTATATTTATATTTATAGAGTATATTTCCTAAAGTTAGCTGTTTGTTGTCTCTTAATGGACTACTGAATTACGACTTTTTAAAATCTCAGAATTACCCAGGTCAGTCTCTTAGTACTTTTTTTTTTTTTTAAAGGTTCAGGTGGAAGGTTATAATTACACTGGCATGGGAAATTCCACCAATAA
..................................................................................(((((((...........((((..(((..(((.....)))..)))..)))).....(((((.....................))))).........))))))).................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577738(Rovira)
total RNA. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
.....................................................CATTCTCTTATTTTTATATTTATATTTATAG......................................................................................................................................................................31179.0079.0029.0010.0012.0028.00-----------------------
.....................................................CATTCTCTTATTTTTATATTTATATTTACAG......................................................................................................................................................................31151.001.00-25.0025.00---1.00--------------------
......................................................................................................................................................................................................AGGTTCAGGTGGAAGGTT..................................18111.0011.00--------5.003.003.00----------------
.....................................................CATTCTCTTATTTTTATATTTATAG............................................................................................................................................................................257.000.002.00--5.00-----------------------
......................................................................................................................................................................................................AGGTTCAGGTGGAAGGTTA.................................1917.007.00----6.00----1.00-----------------
......................................................................................................................................................................................................AGGTTCAGGTGGAAGGTTATAA..............................2216.006.00----6.00----------------------
...................................CTTTTTCAGTAGCTCATGCATTC................................................................................................................................................................................................2315.005.001.001.00----3.00--------------------
......................................................ATTCTCTTATTTTTATATTTATATTTACAG......................................................................................................................................................................303.000.00-1.002.00------------------------
...............................................................................................................................................................................TTAGTACTTTTTTTTTTTTTTGCC...................................................242.000.00-----2.00---------------------
......................................................ATTCTCTTATTTTTATATTTATATTATAG.......................................................................................................................................................................292.000.002.00--------------------------
......................................................ATTCTCTTATTTTTATATTTATATTTATAG......................................................................................................................................................................3012.002.001.001.00-------------------------
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTTGCC...................................................222.000.00-----1.00-1.00-------------------
.................................................................................................AAGTTAGCTGTTTGTTGTCCCT...................................................................................................................................222.000.00-------2.00-------------------
.....................................................CATTCTCTTATTTTTATATTTATATTATAG.......................................................................................................................................................................302.000.002.00--------------------------
...........................................................................................................................................................................................................CAGGTGGAAGGTTATAATTACA.........................2212.002.00--------------------1.00--1.00---
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTTCCCC..................................................232.000.00-----2.00---------------------
.......................................................................................................................................................................................................GGTTCAGGTGGAAGGTTATAATTACA.........................2611.001.00----1.00----------------------
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTTAAGAG.................................................241.000.00-------1.00-------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTAAAGGGCCC.............................................251.000.00-----1.00---------------------
................................................................................................................................................................................TAGTACTTTTTTTTTTTTTTCTCT..................................................241.000.00-------1.00-------------------
......................................................ATTCTCTTATTTTTATTTG.................................................................................................................................................................................191.000.00-1.00-------------------------
.....................................................CATTCTCTTATTTTTATATTTATATTTATA.......................................................................................................................................................................3011.001.001.00--------------------------
.........................................................................................................................ATGGACTACTGAATTACGACTTT..........................................................................................................2311.001.00----------------1.00----------
.......................................................TTCTCTTATTTTTATATTTATATTTATAG......................................................................................................................................................................2911.001.00---1.00-----------------------
.........................................................................................................................................................................................................TTCAGGTGGAAGGTTATAATTACACCG......................271.000.00------1.00--------------------
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTTGTAG..................................................231.000.00-----1.00---------------------
..........................................................................................................................................................................................................................AATTACACTGGCATGGGAAATTCCAC......2611.001.00------------1.00--------------
.........................................................................................................................................................................................................TTCAGGTGGAAGGTTGT................................171.000.00-------------1.00-------------
................................................................................................................................................................................TAGTACTTTTTTTTTTTTCCTT....................................................221.000.00-------1.00-------------------
...................................................................................................................................................................................TACTTTTTTTTTTTTTTATGG..................................................211.000.00---1.00-----------------------
................................................................................................................................................................................TAGTACTTTTTTTTTTTTTTCTTG..................................................241.000.00-----1.00---------------------
..............................................................ATTTTTATATTTATATTTATAG......................................................................................................................................................................2211.001.001.00--------------------------
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTATTG...................................................221.000.00---1.00-----------------------
.....................................................CATTCTCTTATTTTTATATTTATATATAG........................................................................................................................................................................291.000.00---1.00-----------------------
................................................................................................................................................................ACCCAGGTCAGTCTCTTAGTAC....................................................................2211.001.00-----------1.00---------------
...............................................................TTTTTATATTTATATTTATACAG....................................................................................................................................................................231.000.00------------------1.00--------
...............................................................................................................................................................................TTAGTACTTTTTTTTTTTCTTT.....................................................221.000.00------1.00--------------------
...............................................................TTTTTATATTTATATCGC.........................................................................................................................................................................181.000.00------1.00--------------------
...................................CTTTTTCAGTAGCTCATGCATCC................................................................................................................................................................................................231.000.00------1.00--------------------
................................................................................................................................................................................TAGTACTTTTTTTTTTTTCTGG....................................................221.000.00------1.00--------------------
......................................................................................................................................................................................................AGGTTCAGGTGGAAGGTTATAATTACA.........................2711.001.00----1.00----------------------
.......................................................................................................................................................................................................................................TGGGAAATTCCACCAATA.1811.001.00--------------1.00------------
............................................................................................................................................................................................................AGGTGGAAGGTTATAATTA...........................1921.001.00----1.00----------------------
................................................................TTTTATATTTATATTTATAATG....................................................................................................................................................................221.000.001.00--------------------------
................................................................................................................................................................................TAGTACTTTTTTTTTTTTTTCTTT..................................................241.000.00-------1.00-------------------
...............................................................................................................................................................................TTAGTACTTTTTTTTTTTTGCC.....................................................221.000.00-----1.00---------------------
...................................................................................................................................................................................TACTTTTTTTTTTTTTTATAAT.................................................221.000.00-1.00-------------------------
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTTCTGC..................................................231.000.00-----1.00---------------------
...............................................................................................................................................................................TTAGTACTTTTTTTTTTTTTTGCA...................................................241.000.00-----1.00---------------------
...............................................................................................................................................................................................................TGGAAGGTTATAATTAACTT.......................201.000.00-----------------1.00---------
.....................................................CATTCTCTTATTTTTATATTTATATTTACAA......................................................................................................................................................................3111.001.00-1.00-------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTAAAGCTGA..............................................241.000.00----------------------1.00----
.....................................................CATTCTCTTATTTTTATATTTATATTTATAT......................................................................................................................................................................3111.001.001.00--------------------------
.....................................................CATTCTCTTATTTTTATATTTATATTTATAA......................................................................................................................................................................3111.001.00--1.00------------------------
.................................................................................................................................................................................AGTACTTTTTTTTTTTTTTCTTC..................................................231.000.00-------1.00-------------------
.....................................................CATTCTCTTATTTTTATATTTATATTTA.........................................................................................................................................................................2811.001.001.00--------------------------
...................................................................................................................................................................................TACTTTTTTTTTTTTTTAAAAAAG...............................................241.000.00-1.00-------------------------
......................................................................................................................................................................................................AGGTTCAGGTGGAAGGTTATA...............................2111.001.00----1.00----------------------
...................................................................................................................................................................................................TAAAGGTTCAGGTGGAAGGTTATAATTA...........................2811.001.00-------------------1.00-------
................................................................................................AAAGTTAGCTGTTTGTT.........................................................................................................................................1720.500.50------------------------0.50--
...............................................................................................................................................................................................................TGGAAGGTTATAATTAC..........................1730.330.33-------------------------0.33-
...................................................................................................................................................................................TACTTTTTTTTTTTTTTAAAGG.................................................2260.170.17---0.17-----------------------

Antisense strand
CACTTAAATTATTTTTGGATACAACACAATTTAAGCTTTTTCAGTAGCTCATGCATTCTCTTATTTTTATATTTATATTTATAGAGTATATTTCCTAAAGTTAGCTGTTTGTTGTCTCTTAATGGACTACTGAATTACGACTTTTTAAAATCTCAGAATTACCCAGGTCAGTCTCTTAGTACTTTTTTTTTTTTTTAAAGGTTCAGGTGGAAGGTTATAATTACACTGGCATGGGAAATTCCACCAATAA
..................................................................................(((((((...........((((..(((..(((.....)))..)))..)))).....(((((.....................))))).........))))))).................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577738(Rovira)
total RNA. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
...............................................................................................................................................................TACCCAGGTCAGTCTCTTAGAAG.................................................................... 231.000.00------------1.00--------------
.................................................................................................................................................................CCCAGGTCAGTCTCTCAA....................................................................... 181.000.00---------------1.00-----------
...........................................................TATAAATATAAATATAAAAATAAG....................................................................................................................................................................... 2411.001.00--1.00------------------------
........................................................................................................................................................................................TTTTTTTTTTTTAAAGGTTTA............................................. 211.000.00-----------1.00---------------
........................CACAATTTAAGCTTTATCC............................................................................................................................................................................................................... 191.000.00---------------------1.00-----
.....................................................................................................................................................................................AACCTTTAAAAAAAAAAAAAAG............................................... 2260.170.17--------------------------0.17