ID: uc001gly.1_intron_0_0_chr1_178694555_f.3p
GENE: RALGPS2(1)
chr1:178745617-178745866+


(3)
B-CELL 		(1)
BREAST 		(15)
CELL-LINE 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(4)
SKIN

Sense strand
TGAATACTGTTTATTTGGTGTTCTGATTGTTTGAAAAGAGCATACAAGATTGTCCTCAGTTTGGATTTAGCGACTGAGCTAAGATAATAAATAGAGTTTAGTGAAGTTGAAATTTTTGTTTCTTGGCATGGTGGTAGGCATAGAGTTGTTTTCTTGAACTTCGAGGAAGACATTTGCTTAACTTTTTTTTTTTTTTACAGGAATAATGTATTTGTGGCCTTGGACATGAGGCAGTCAGTCCTCTGTTGCT
.....................................................................((.((((.(((((((.((((((.....(((((.....)))))...))))))))))))).)))).))(((((......(((((((((........)))))))))..))))).......................................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................AACTTTTTTTTTTTTTTACAG..................................................21741.5741.5721.4316.141.71-2.140.14---------------------
................................................................................................................................................................................CTTAACTTTTTTTTTTTTTTAAAG..................................................2410.000.002.002.003.00-3.00----------------------
................................................................................................................................................................................CTTAACTTTTTTTTTTTTTAG.....................................................216.000.002.002.001.00-1.00----------------------
...................................................................................................................................................................................AACTTTTTTTTTTTTTTACGG..................................................216.000.003.003.00-------------------------
................................................................................................................................................................................CTTAACTTTTTTTTTTTAAAG.....................................................215.000.00-3.00--2.00----------------------
...................................................................................................................................................................................AACTTTTTTTTTTTTTTACTATG................................................234.000.003.001.00-------------------------
................................................................................................................................................................................CTTAACTTTTTTTTTTTTTTAATTG.................................................253.000.002.00---1.00----------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACACAG................................................223.000.00--1.00--2.00---------------------
.................................................................................................................................................................................TTAACTTTTTTTTTTTTTTACATG.................................................242.000.001.00-1.00------------------------
.........................................................................................................................................................................................................................CCTTGGACATGAGGCAGT...............1812.002.00-------2.00-------------------
.........................................................................................................................................................................................................................CCTTGGACATGAGGCAGTCAGT...........2212.002.00-------1.00------1.00------------
.................................................................................................................................................................................................................ATTTGTGGCCTTGGACATG......................1912.002.00--------2.00------------------
..........................................................................................................................................................................................................................CTTGGACATGAGGCAGTCAGT...........2112.002.00-----------1.00-------1.00-------
..................................................................................................................................................................................TAACTTTTTTTTTTTTTTACATG.................................................232.000.00-1.001.00------------------------
................................................................................................................................................................................CTTAACTTTTTTTTTTTTTTAAAAG.................................................252.000.00-2.00-------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACAGG.................................................2121.501.50-----1.000.50--------------------
......................................................................CGACTGAGCTAAGATGATC.................................................................................................................................................................191.000.00------------------1.00--------
.......................................................................................................AAGTTGAAATTTTTGTGAT................................................................................................................................191.000.00------------1.00--------------
............................................................................................................................................................................................................AATGTATTTGTGGCCTTGGACA........................2211.001.00--------------------1.00------
.....................................................................................................................................GTAGGCATAGAGTTGTTTTCTTGAAC...........................................................................................2611.001.00-------------------------1.00-
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACGTAG................................................221.000.00-1.00-------------------------
......................................................................CGACTGAGCTAAGATGGCA.................................................................................................................................................................191.000.00---------------------1.00-----
...................................................................................................................................................................................AACTTTTTTTTTTTTTTACCGG.................................................221.000.00-----1.00---------------------
.............................................................................................................................................................................................................ATGTATTTGTGGCCTTGGACAT.......................2211.001.00----------------1.00----------
....................................AGAGCATACAAGATTGTCCTCAGTTT............................................................................................................................................................................................2611.001.00---------------1.00-----------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACAGTTC...............................................231.000.00-----1.00---------------------
.....................................................................................................................................................................................CTTTTTTTTTTTTTTACAGGAACAA............................................251.000.00------------------------1.00--
................................................................................................................................................................................CTTAACTTTTTTTTTTTTTCCC....................................................221.000.00----1.00----------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACAGTGG...............................................231.000.00------1.00--------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACGGG.................................................211.000.00-----1.00---------------------
.....................................................CCTCAGTTTGGATTTAGCGACTGA.............................................................................................................................................................................2411.001.00-----------------1.00---------
................................................................................................................................................................................CTTAACTTTTTTTTTTTTCATT....................................................221.000.00--1.00------------------------
................................................................................................................................................................................CTTAACTTTTTTTTTTTTTTACAAATT...............................................271.000.00--1.00------------------------
...................................................................................................................................................................................AACTTTTTTTTTTTTTTACTA..................................................211.000.001.00--------------------------
......................................................................................................GAAGTTGAAATTTTTGTG..................................................................................................................................181.000.00---------1.00-----------------
.........................................................................................................................................................................................................AATAATGTATTTGTGGCCTTGGA..........................2311.001.00-------------1.00-------------
...............................................................................................................................................................................................................................ACATGAGGCAGTCAGTCGG........191.000.00-----------------------1.00---
.................................................................................................................................................................................TTAACTTTTTTTTTTTTTTACG...................................................221.000.00--1.00------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTACAGACT...............................................231.000.00------1.00--------------------
.....................................................................................................................................................................................................................................GGCAGTCAGTCCTCTGTT...1811.001.00----------------------1.00----
.............................................................................................................................................................................TTGCTTAACTTTTTTTTTTTTTCTTT...................................................261.000.00------1.00--------------------
...................................................................................................................................................................................................................TTGTGGCCTTGGACATG......................1720.500.50--------------------------0.50

Antisense strand
TGAATACTGTTTATTTGGTGTTCTGATTGTTTGAAAAGAGCATACAAGATTGTCCTCAGTTTGGATTTAGCGACTGAGCTAAGATAATAAATAGAGTTTAGTGAAGTTGAAATTTTTGTTTCTTGGCATGGTGGTAGGCATAGAGTTGTTTTCTTGAACTTCGAGGAAGACATTTGCTTAACTTTTTTTTTTTTTTACAGGAATAATGTATTTGTGGCCTTGGACATGAGGCAGTCAGTCCTCTGTTGCT
.....................................................................((.((((.(((((((.((((((.....(((((.....)))))...))))))))))))).)))).))(((((......(((((((((........)))))))))..))))).......................................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................CCTGTAAAAAAAAAAAAAAGT................................................. 2128.008.00---8.00-----------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTACAGGCG............................................... 202.000.00---2.00-----------------------
..................................................................................................TAGTGAAGTTGAAATCTG...................................................................................................................................... 181.000.00---------1.00-----------------
.....................................................................................................................................................................................................CAGGAATAATGTATTTGTCATT............................... 221.000.00----------1.00----------------
........................................................................................................................................................................................TTTTTTTTTTTTACAGGGG............................................... 191.000.00---1.00-----------------------