ID: uc001glv.1_intron_14_0_chr1_178516299_f.3p
GENE: C1orf49(15)
chr1:178517211-178517460+


(1)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(1)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(6)
LIVER
(4)
SKIN
(1)
UTERUS

Sense strand
CCGCTGTGGAGCTGGGGTGTCCACATGCCTGTATGGAAGAACTTTCATGGCACCGGAGCCTGGTGGGAAGAGAAGTGGGCTGGGCTATAGACTGGGCACCAGGGACTATCACCTCGTGCCACCACATTTAGTGTAGAGTTCCAGAGAGGCCACAAATTCTTCATTTGAACTGGACTCCCCAGCCTCATGTTCCTCTGCAGGATGTAAAAGGTAATGCCAGCAGACGTTGGCAGTGCTGGAGACACCTGGT
................................................................(((((.....((((((((((..........(((((.(((........))).)))))..(((.....)))..(((.(((((((((........)))).........))))))))))))))).))).)))))........................................................
...............................................................64................................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040009(GSM532894)
G727T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................AGAGAAGTGGGCTGGATGT...................................................................................................................................................................1917.000.009.004.00---1.002.00-----------------1.00--
....................................................................AGAGAAGTGGGCTGGATG....................................................................................................................................................................1814.000.006.006.00------1.00------1.00-----------
......................................................................AGAAGTGGGCTGGGCTA...................................................................................................................................................................1715.005.00----------1.00---1.00-1.00-1.00--1.00-----
....................................................................AGAGAAGTGGGCTGGATA....................................................................................................................................................................184.000.003.001.00-------------------------
.............................................................................................................................................................................................................................AGACGTTGGCAGTGCTGGAGAC.......2213.003.00--3.00------------------------
........................................................AGCCTGGTGGGAAGAGAAGTGGGCTGGGCT....................................................................................................................................................................3012.002.00----2.00----------------------
............................................................................................................................................................................GACTCCCCAGCCTCATGT............................................................1811.001.00----1.00----------------------
......................................................GGAGCCTGGTGGGAAGAGAAGTGCG...........................................................................................................................................................................251.000.00-------1.00-------------------
..........................................................................................ACTGGGCACCAGGGACTGAGG...........................................................................................................................................211.000.00---1.00-----------------------
........................................................................AAGTGGGCTGGGCTATAGA...............................................................................................................................................................1911.001.00-----1.00---------------------
.............................................................................................................................................................................................................................AGACGTTGGCAGTGCTGGAGACACCT...2611.001.00-1.00-------------------------
...................................................................AAGAGAAGTGGGCTGTAC.....................................................................................................................................................................181.000.00-----------1.00---------------
.................................................................................................................................AGTGTAGAGTTCCAGAGAGGCCA..................................................................................................2311.001.00-1.00-------------------------
......TGGAGCTGGGGTGTCCACATGCCTGTATG.......................................................................................................................................................................................................................2911.001.00-------------------------1.00-
....................................................................................................................................................................................................GCAGGATGTAAAAGGTAATG..................................2011.001.001.00--------------------------
....................................................................................................................................GTAGAGTTCCAGAGAGGC....................................................................................................1811.001.00-----------------1.00---------
........................................................................AAGTGGGCTGGGCTATAGACT.............................................................................................................................................................2111.001.00-------------------1.00-------
......TGGAGCTGGGGTGTCCACATGCCTGC..........................................................................................................................................................................................................................261.000.00---1.00-----------------------
.......................................................................................TAGACTGGGCACCAGGGA.................................................................................................................................................1811.001.00---------1.00-----------------
..............................................................................................................................TTTAGTGTAGAGTTCCAGAGAGGCCA..................................................................................................2611.001.00-----------------------1.00---
......................ACATGCCTGTATGGATGT..................................................................................................................................................................................................................181.000.00-------------1.00-------------
........................................................................................................................................................................ACTGGACTCCCCAGCCTCATGT............................................................2211.001.00---1.00-----------------------
..................................................................GAAGAGAAGTGGGCTGGGCTATA.................................................................................................................................................................2311.001.00----------------------1.00----
..............................................................GTGGGAAGAGAAGTGGTATC........................................................................................................................................................................201.000.00--------------------1.00------
.........................................................................................................................................................................................CATGTTCCTCTGCAGGA................................................1730.670.67--------------------------0.67

Antisense strand
CCGCTGTGGAGCTGGGGTGTCCACATGCCTGTATGGAAGAACTTTCATGGCACCGGAGCCTGGTGGGAAGAGAAGTGGGCTGGGCTATAGACTGGGCACCAGGGACTATCACCTCGTGCCACCACATTTAGTGTAGAGTTCCAGAGAGGCCACAAATTCTTCATTTGAACTGGACTCCCCAGCCTCATGTTCCTCTGCAGGATGTAAAAGGTAATGCCAGCAGACGTTGGCAGTGCTGGAGACACCTGGT
................................................................(((((.....((((((((((..........(((((.(((........))).)))))..(((.....)))..(((.(((((((((........)))).........))))))))))))))).))).)))))........................................................
...............................................................64................................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040009(GSM532894)
G727T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................GTGCCACCACATTTAGATGC................................................................................................................... 201.000.00-------1.00-------------------
......................................................................................................................................................................GAACTGGACTCCCCAGGG.................................................................. 181.000.00------------1.00--------------