ID: uc001glj.1_intron_24_0_chr1_177937175_r.5p
GENE: SEC16B(6)
chr1:177940331-177940580-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(8)
CELL-LINE
(2)
CERVIX
(2)
HELA
(1)
OTHER
(4)
SKIN
(1)
UTERUS

Sense strand
AAACAACAGTGCAGCCATTAGAGAGCCAAACTTCACAGCCCAAGAGTGAGGTAAGAAACCATTAGTGGCTAGGCATGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCTCAGGCAGGTGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGATGAAACCCCTTCTTTACTAAAAATACAAAAATTAGCCAGGGGTGGTGGCACGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG
.............................................................................(((..(((((((((...((((((....))))))....)))))..))))..)))..(((((((.(((...)))...)))))))...........................................................................................
............................................................................77...............................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR040031(GSM532916)
G013T. (cervix)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................AGGTCAGGAGTTTGAGACCAGCCGCCC............................................................................................272.000.002.00------------------------
..................................................................................................................................AAGGTCAGGAGTTTGAGACCAGCCGACC............................................................................................282.000.002.00------------------------
................................................................................................................................ACAAGGTCAGGAGTTTGAGACCAGCCGGC.............................................................................................292.000.002.00------------------------
.........................................................................................................TGGGAGGCTCAGGCAGGTGGATCACGG......................................................................................................................272.000.002.00------------------------
...................................................................................................................................AGGTCAGGAGTTTGAGACCAGCCGTCC............................................................................................272.000.001.00----1.00-------------------
.................................................................................CTTACGCCTGTAATCCCACAAA...................................................................................................................................................222.000.00-------------------1.00--1.00--
..................................................................................................................................AAGGTCAGGAGTTTGAGACCAGGCCG..............................................................................................262.000.00-2.00-----------------------
..................................................................................TTACGCCTGTAATCCCAGCACTTAT...............................................................................................................................................251.000.00---1.00---------------------
.............................................................................................................................ATCACAAGGTCAGGAGTTT..........................................................................................................1901.001.00--------------1.00----------
..............................................................................................TCCCAGCACTTTGGGAGGCTCGCTC...................................................................................................................................251.000.001.00------------------------
...................................................................................................................................................ACCAGCCTGGCCAACATGATCTA................................................................................231.000.00-1.00-----------------------
................................................................................................................................ACAAGGTCAGGAGTTTGTGAT.....................................................................................................211.000.00------------1.00------------
....................................................................................................................GGCAGGTGGATCACAAGGCAA.................................................................................................................211.000.00------------------1.00------
..............................................................................................................................TCACAAGGTCAGGAGTAAAC........................................................................................................201.000.00----------1.00--------------
........................................................................................................................................................................................................................CGCACCTGTAATCCCAGCTACTGCGG........261.000.00-1.00-----------------------
.........................................................................................................................................................CTGGCCAACATGATGAAACCCCTCTA.......................................................................261.000.00----------------1.00--------
..................................................................................TTACGCCTGTAATCCCAGCAAA..................................................................................................................................................221.000.00---1.00---------------------
..................................................................................TTACGCCTGTAATCCCAGCACTAA................................................................................................................................................241.000.00---1.00---------------------
..........................................................................ATGGTGGCTTACGCCTGTAATCCCAATG....................................................................................................................................................281.000.00-----------------------1.00-
...................................................................................................................AGGCAGGTGGATCACAAGGTCAGGAGGCC..........................................................................................................291.000.00-1.00-----------------------
..................................................................................TTACGCCTGTAATCCCAGCACTAG................................................................................................................................................241.000.00---1.00---------------------
................................................................................................CCAGCACTTTGGGAGGCTCAGGCACCAA..............................................................................................................................281.000.00--1.00----------------------
.................................................................................................................................................AGACCAGCCTGGCCAACATGATGAAACCCGGC.........................................................................321.000.001.00------------------------
.....................................................................................................................................................................................................TTAGCCAGGGGTGGTGGCACGCTCCC...........................261.000.001.00------------------------
..................................................................................................................................AAGGTCAGGAGTTTGAGACCAGCCCGTC............................................................................................281.000.00-1.00-----------------------
..................................................................................TTACGCCTGTAATCCCAGCACTACT...............................................................................................................................................251.000.00-------1.00-----------------
............................................................................................AATCCCAGCACTTTGGGAGGCTCAACGG..................................................................................................................................281.000.00-1.00-----------------------
................................................................................................CCAGCACTTTGGGAGGCTCCTT....................................................................................................................................221.000.00--1.00----------------------
........................................................................................................TTGGGAGGCTCAGGCAGGTGGATCATCCG.....................................................................................................................291.000.00-1.00-----------------------
....................................................................................................................................................................................................ATTAGCCAGGGGTGGTGGCACGCCCC............................261.000.001.00------------------------
..............................................................................................................................................................................................................................TGTAATCCCAGCTACTCGGGCGT.....231.000.00---------------1.00---------
......................................................................................................................................TCAGGAGTTTGAGACCAGCCGCCC............................................................................................241.000.001.00------------------------
...................................................................................................................................AGGTCAGGAGTTTGAGACCAGCCGGTC............................................................................................271.000.001.00------------------------
....................................................................................................CACTTTGGGAGGCTCGGC....................................................................................................................................181.000.00------1.00------------------
................................................................................................CCAGCACTTTGGGAGGCTCTAGG...................................................................................................................................231.000.00--1.00----------------------
................................................................................................CCAGCACTTTGGGAGGCTCGGAG...................................................................................................................................231.000.00--1.00----------------------
............................................................................................................................GATCACAAGGTCAGGAGTTTGAG.......................................................................................................2301.001.00--------------------1.00----
.................................................................................................................................................AGACCAGCCTGGCCAACATGATGATT...............................................................................261.000.00-----1.00-------------------
...............................................................AGTGGCTAGGCATGGGCGC........................................................................................................................................................................191.000.00-------------1.00-----------
...................................................................................TACGCCTGTAATCCCAGGAAC..................................................................................................................................................211.000.001.00------------------------
..............................................................................................................................TCACAAGGTCAGGAGTTTGAGA......................................................................................................2201.001.00----1.00--------------------
.............................................................................................ATCCCAGCACTTTGGGAGGCTCAGCGAG.................................................................................................................................281.000.001.00------------------------
...............................................................................................CCCAGCACTTTGGGAGGCTCCAT....................................................................................................................................231.000.00--1.00----------------------
..................................................................................TTACGCCTGTAATCCCAGCACTTATAA.............................................................................................................................................271.000.00---1.00---------------------
................................................................................................CCAGCACTTTGGGAGGCTCAG.....................................................................................................................................2101.001.00----1.00--------------------
............................................................................................................................................................................................................................CCTGTAATCCCAGCTACTCGGGCGT.....251.000.00---------1.00---------------
..................................................................................TTACGCCTGTAATCCCAGCACTTACTT.............................................................................................................................................271.000.00-----------1.00-------------
..................................................................................................................................AAGGTCAGGAGTTTGAGACCAGCGGCC.............................................................................................271.000.001.00------------------------
.................................................................................................CAGCACTTTGGGAGGCTCAGGC...................................................................................................................................2201.001.00----1.00--------------------

Antisense strand
AAACAACAGTGCAGCCATTAGAGAGCCAAACTTCACAGCCCAAGAGTGAGGTAAGAAACCATTAGTGGCTAGGCATGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCTCAGGCAGGTGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGATGAAACCCCTTCTTTACTAAAAATACAAAAATTAGCCAGGGGTGGTGGCACGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG
.............................................................................(((..(((((((((...((((((....))))))....)))))..))))..)))..(((((((.(((...)))...)))))))...........................................................................................
............................................................................77...............................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR040031(GSM532916)
G013T. (cervix)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................................................................CGCACCTGTAATCCCAGCTACTAGCA........ 262.000.002.00------------------------
........................................................................................................................................................................................................................CGCACCTGTAATCCCAGCTAGGT........... 231.000.00-1.00-----------------------
.............................ACTTCACAGCCCAAGAGTGACTG...................................................................................................................................................................................................... 231.000.00-----------------1.00-------
.......................................................................................................................AGGTGGATCACAAGGTCATCA.............................................................................................................. 211.000.00---1.00---------------------
....................................................................................................................GGCAGGTGGATCACAAGGTCAGGAGTTAGG........................................................................................................ 301.000.001.00------------------------
..........................................................................................................................................................TGGCCAACATGATGAACGCA............................................................................ 201.000.00------1.00------------------
.......................................................................................................................................................GCCTGGCCAACATGATGAAACCCCTC......................................................................... 261.000.001.00------------------------
..................................................................................................................................................................................................AAATTAGCCAGGGGTGGTGGCAGTA............................... 251.000.001.00------------------------
...................................................................................................................AGGCAGGTGGATCACAAGGTCAGGAC............................................................................................................. 261.000.00--1.00----------------------
....................................................................................................................................................CCAGCCTGGCCAACATGATGAAAAAA............................................................................ 261.000.00---------------------1.00---
..........................................................................................................................................................................................AAATACAAAAATTAGCCAGGGGTAG....................................... 251.000.001.00------------------------
........................................................................................................................................................................................................................CGCACCTGTAATCCCAGCTACTATCC........ 261.000.00-1.00-----------------------
..................................................................................................................CAGGCAGGTGGATCACAAGGTCATA............................................................................................................... 251.000.00---1.00---------------------
......................................................................................................................................................AGCCTGGCCAACATGACCC................................................................................. 191.000.00-1.00-----------------------
............................................................................................................................................GTTTGAGACCAGCCTGGCCAACATGATCAC................................................................................ 301.000.00-1.00-----------------------
.....................................................................................................................................................................................................................GCACGCACCTGTAATCCCAGCTACTCGCC........ 291.000.00--1.00----------------------
......................................................................................................................................................................................................TAGCCAGGGGTGGTGGCACCT............................... 211.000.00-----1.00-------------------
......................................................................................................................................................................................................................CACGCACCTGTAATCCCAGCTAGG............ 241.000.001.00------------------------
.......................................................................GGCATGGTGGCTTACGCCTGTAATGGCC....................................................................................................................................................... 281.000.00-1.00-----------------------
..........................................................................................................................................................................................AAATACAAAAATTAGCCAGGGGTGGTAG.................................... 281.000.001.00------------------------
....................................................................................................................GGCAGGTGGATCACAAGGTCAGGAGTGGCT........................................................................................................ 301.000.001.00------------------------
....................................................................................................................GGCAGGTGGATCACAAGGTCAGGAGTCGG......................................................................................................... 291.000.001.00------------------------
.....................................................................................................................................................................................................................GTAGCTGGGATTACAGGTGCGTGC............. 2401.001.00----1.00--------------------
......................................................................................................................................................AGCCTGGCCAACATGATGAAACCAGAG......................................................................... 271.000.00--1.00----------------------
.................................................................................................................TCAGGCAGGTGGATCACAAGGTCACC............................................................................................................... 261.000.001.00------------------------
..................................................................GGCTAGGCATGGTGGCTTACGCCTGTACCT.......................................................................................................................................................... 301.000.001.00------------------------
.....................................................................................................................GCAGGTGGATCACAAGGTCAGGAGTGGCC........................................................................................................ 291.000.001.00------------------------
.............................................................................................................................................................CCAACATGATGAAACGC............................................................................ 171.000.00--------1.00----------------
............................................................................................................CTTGTGATCCACCTGCCTGAGCCTC..................................................................................................................... 2540.250.25------------------------0.25