ID: uc001giz.2_intron_22_0_chr1_173552762_r.5p
GENE: SLC9A11(5)
chr1:173556604-173556853-


(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(9)
B-CELL 		(3)
BREAST 		(11)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
CCTTGGCATTATAGATCCTCTTCGTTCTGTGAATTCACTAAAAACTATTGGTATGTCACATTTATTTCTCTCTCTTATCTTGAAAATATAAGGGTACATTATTTTCTTTTGATTATATTTTTCTTGCATGAATTGTGCACCCAGAAGAATAAGACTCTGTGCTTTTTTTTTCACCTTGAGAGGTAGAGCACTGATTGACTTTAAGGAGACAGTGCAAATAAGACAGCCACCAAGGAGATGAGATAAGTAG
...........................................................................................................................................................((.(((((((.((((((.....)))))).))))))).))........................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189784SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR343336SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
....................................................................................................................................................................................AGGTAGAGCACTGATTGGGCT.................................................21118.001.0013.00---1.00----2.00--------1.00-------------------1.00----------------
...................................................................................................................................................................................GAGGTAGAGCACTGACTG.....................................................1815.000.00---9.00--6.00------------------------------------------------
.....................................................................................................................................................................................GGTAGAGCACTGATTGGGC..................................................1913.000.00--13.00----------------------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGGC..................................................21111.001.00-5.00--4.00---------------2.00----------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGAATGG....................................................198.000.00---------2.00-----1.00-2.00------1.00-----------1.00-----------1.00------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGGC..................................................2016.001.00-1.00---4.00---------------1.00---------------------------------
.....................................................................................................................................................................................GGTAGAGCACTGATTGG....................................................176.000.00-------5.00-----1.00-----------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGG....................................................1816.001.00------------1.001.002.001.00----------------------------1.00----------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGGCT.................................................2215.001.00-1.00-------------------1.00-----1.00------1.00------1.00-------------
...................................................................................................................................................................................GAGGTAGAGCACTGAATG.....................................................184.000.00-------------------2.00--1.00---------1.00----------------------
...................................................................................................................................................................................GAGGTAGAGCACTGAAT......................................................173.000.00----------2.00-----------------------------------1.00--------
...................................................................................................................................................................................GAGGTAGAGCACTGAATCG....................................................192.000.00--------1.00-------------------1.00--------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGAATT.....................................................182.000.00-------------------------1.00-----------------1.00-----------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGAC..................................................2112.001.00------------1.00--------------------------------1.00---------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGGCA.................................................2112.001.00-----------------------1.00---------------1.00---------------
....................................................................................................................................................................................AGGTAGAGCACTGATCGGG...................................................192.000.00----2.00--------------------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATGGGC...................................................192.000.00-----2.00-------------------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGAACTA................................................232.000.00----------------2.00--------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGAATA.....................................................182.000.00--------2.00----------------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGAGC..................................................201.000.00----------------------------------------1.00--------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGA...................................................1911.001.00------------------1.00------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGACTGG....................................................191.000.00---------------------------------1.00---------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGACT.................................................2111.001.00-1.00-----------------------------------------------------
..................................................................................................................................................................................AGAGGTAGAGCACTGAATG.....................................................191.000.00------------------------------1.00------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGGGG.................................................2211.001.00----1.00--------------------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGACT.................................................2211.001.00-1.00-----------------------------------------------------
....................................................................................................................................................................................................................................ACCAAGGAGATGAGACCCA...191.000.00-----------1.00-------------------------------------------
..................................................................................................................................................................................AGAGGTAGAGCACTGTATC.....................................................191.000.00-------------------------------------1.00-----------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGTC..................................................2111.001.00--------------------------------------------------1.00----
....................................................................................................................................................................................AGGTAGAGCACTGATTGGGA..................................................2011.001.00-----1.00-------------------------------------------------
.............................................................................................................................................................TGTGCTTTTTTTTTCCCGG..........................................................................191.000.00-----------1.00-------------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGAAAGG....................................................191.000.00------------------------------------------1.00------------
.......................................................................................................................................................AGACTCTGTGCTTTTTTTT................................................................................1911.001.00-----------1.00-------------------------------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATCGG....................................................191.000.00-1.00-----------------------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGG...................................................1911.001.00-------------------------------1.00-----------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTG.....................................................1811.001.00-1.00-----------------------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTG.....................................................1711.001.00----------1.00--------------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATCGG....................................................181.000.00-----------------------------1.00-------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGACG.................................................2111.001.00-----------------------------------1.00-------------------
...................................................................................................................................................................................GAGGTAGAGCACTGATTGGG...................................................2011.001.00-------------------------------------------------1.00-----
......................................................................................................................................................................................GTAGAGCACTGATTGAACT.................................................191.000.00--------------------------1.00----------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATTGGGT..................................................2011.001.00--------1.00----------------------------------------------
....................................................................................................................................................................................AGGTAGAGCACTGATT......................................................1640.250.25---------------------------------------------------0.25---
.....................................................................................................................................................................................GGTAGAGCACTGATT......................................................1550.200.20------------0.20------------------------------------------
......................................................................................................................................................................................GTAGAGCACTGATTGGAC..................................................1850.200.20-----------------------------------------------------0.20-
......................................................................................................................................................................................GTAGAGCACTGATTG.....................................................1550.200.20----------------------0.20--------------------------------
.....................................................................................................................................................................................GGTAGAGCACTGATTCGGT..................................................1950.200.20----------------------------------------------------0.20--
..............................................................................................................................................................................................................................ACAGCCACCAAGGAG.............1570.140.14------------------------------------------------------0.14

Antisense strand
CCTTGGCATTATAGATCCTCTTCGTTCTGTGAATTCACTAAAAACTATTGGTATGTCACATTTATTTCTCTCTCTTATCTTGAAAATATAAGGGTACATTATTTTCTTTTGATTATATTTTTCTTGCATGAATTGTGCACCCAGAAGAATAAGACTCTGTGCTTTTTTTTTCACCTTGAGAGGTAGAGCACTGATTGACTTTAAGGAGACAGTGCAAATAAGACAGCCACCAAGGAGATGAGATAAGTAG
...........................................................................................................................................................((.(((((((.((((((.....)))))).))))))).))........................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189784SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR343336SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.......................AGTGAATTCACAGAAC................................................................................................................................................................................................................... 1641.001.00-----------------------------------------------1.00-------
..........................................................................................................................................................................................................AAGGAGACAGTGCAAATCTT............................ 201.000.00-1.00-----------------------------------------------------
..............................................................................................TACATTATTTTCTTTTGTTG........................................................................................................................................ 201.000.00-1.00-----------------------------------------------------