ID: uc001giz.2_intron_21_0_chr1_173551148_r.3p
GENE: SLC9A11(6)
chr1:173551098-173551347-


(1)
AGO2.ip
(1)
BRAIN
(3)
BREAST
(14)
CELL-LINE
(2)
HEART
(1)
OTHER
(4)
SKIN

Sense strand
CTGCGGACTGTAAGGGAAGGTTATTCTGAGAGAGGTTTTTTTACCAGACTTTCACAAGACACTCCTATTTGCTGACAAATAAGGTGTCCACTCAAAATCTCACAAGCAAACCAAAGTGCAAAGACCCAAATGCCATCAGTGAAAGAGACAAAAGTTATAGCTCAAGTTTTTATTTCTTATTTTTTCTTTCTTTTTTTTAGATTTACATGTAGGCATTGAACTCAGCTATGACATTTTGGGAAGCATAATA
.........................................................................................................(((........))).....................((((((((.(((((..(((((....))...)))..))).)).))))))))............................................................
........................................................................................89.............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
...................................................................................................................................................................................TTTTTTCTTTCTTTTTTTTACG.................................................229.000.003.001.00--3.00-2.00------------------
.............................................................................................AAAATCTCACAAGCAAACT..........................................................................................................................................194.000.00---------3.00-----------1.00---
............................................................................................CAAAATCTCACAAGCAAACT..........................................................................................................................................203.000.00--------2.00---------1.00------
............................................................................................CAAAATCTCACAAGCAAACTCAT.......................................................................................................................................233.000.00--3.00----------------------
...................................................................................................................................................................................TTTTTTCTTTCTTTTTTTTAATG................................................233.000.00----1.00-2.00------------------
............................................................................................CAAAATCTCACAAGCAAACTC.........................................................................................................................................212.000.00--2.00----------------------
.....................................................................................................................................................................................TTTTCTTTCTTTTTTTTACAAG...............................................222.000.00-2.00-----------------------
..............................................................................................................................................................................TCTTATTTTTTCTTTCTTTTTTTTATCTG...............................................292.000.002.00------------------------
...............................................................................................................................................................................CTTATTTTTTCTTTCTTTTTTTAG...................................................242.000.00-1.00--1.00--------------------
................................................................................................................................................................................................................GTAGGCATTGAACTCTG.........................172.000.00-----------2.00-------------
.........................................................................................................................................................................TTATTTCTTATTTTTTCG...............................................................182.000.00-----2.00-------------------
.............................................................................................AAAATCTCACAAGCAAACTCA........................................................................................................................................212.000.00--------2.00----------------
........................TCTGAGAGAGGTTTTTTTTTC.............................................................................................................................................................................................................211.000.00---1.00---------------------
................................................................................................................................................................................TTATTTTTTCTTTCTTTTTCC.....................................................211.000.00---1.00---------------------
.........................................................................................................................................................................................CTTTCTTTTTTTTAGCAAG..............................................191.000.00----1.00--------------------
...................................................................................................................................................................................TTTTTTCTTTCTTTTTTTTAAACG...............................................241.000.00----------1.00--------------
............................................................................................CAAAATCTCACAAGCAAACTCAA.......................................................................................................................................231.000.00--1.00----------------------
..................................................................................................................................................................................ATTTTTTCTTTCTTTTTTACTG..................................................221.000.001.00------------------------
.................................................................................................................................................................TCAAGTTTTTATTTCTATT......................................................................191.000.00----------1.00--------------
......ACTGTAAGGGAAGGTTGA..................................................................................................................................................................................................................................181.000.00-------------------1.00-----
.......CTGTAAGGGAAGGTTGAA.................................................................................................................................................................................................................................181.000.00----------------1.00--------
..............................................................................................AAATCTCACAAGCAAACTCAT.......................................................................................................................................211.000.00--1.00----------------------
....................................................................................................................................................................................TTTTTCTTTCTTTTTTTTACG.................................................211.000.00-1.00-----------------------
...............................................................................................................................................................................CTTATTTTTTCTTTCTTTTTTTTAG..................................................2511.001.001.00------------------------
...............................................................................................................................................................................................................TGTAGGCATTGAACTCTG.........................181.000.00--------------------1.00----
..................................................................................................................................................................................ATTTTTTCTTTCTTTTTTTCGTG.................................................231.000.00---1.00---------------------
.....................................................................................................................................................................GTTTTTATTTCTTATTTTTTTT...............................................................221.000.00-----1.00-------------------
....................................................................................................................................................................................TTTTTCTTTCTTTTTTTTAGACGG..............................................241.000.00-----1.00-------------------
...CGGACTGTAAGGGAAG.......................................................................................................................................................................................................................................1611.001.00----------------------1.00--
..................................................................................................................................................................................ATTTTTTCTTTCTTTTTTTCGTC.................................................231.000.00---1.00---------------------
...................................................................................................................................................................................TTTTTTCTTTCTTTTTTTTACAGC...............................................241.000.00---1.00---------------------
....................................................................................................................................................................................TTTTTCTTTCTTTTTTTTACAGG...............................................231.000.00-----1.00-------------------
.......................................................................................................................................................................................TTCTTTCTTTTTTTTAGACGT..............................................211.000.00---1.00---------------------
..........................................................................................................CAAACCAAAGTGCAATTA..............................................................................................................................181.000.00-------------1.00-----------
.................................................................................................................................................................................TATTTTTTCTTTCTTTTTTTTCTTG................................................251.000.00-1.00-----------------------
......ACTGTAAGGGAAGGTTGAA.................................................................................................................................................................................................................................191.000.00-----------------------1.00-
..................................................................................................................................................................................ATTTTTTCTTTCTTTTTTTTAATG................................................241.000.00----1.00--------------------
............................................................................................CAAAATCTCACAAGCAAACTCA........................................................................................................................................221.000.00--1.00----------------------
........................................................................................................................................................................TTTATTTCTTATTTTTTCTTCTG...........................................................231.000.001.00------------------------
...............................................................................................AATCTCACAAGCAAACTCAT.......................................................................................................................................201.000.00-----------------1.00-------
..............................................................................................................................................................................TCTTATTTTTTCTTTCTTTTTTACCG..................................................261.000.00----1.00--------------------
...................................................................................................................................................................................TTTTTTCTTTCTTTTTTTTAATGG...............................................241.000.00---1.00---------------------
..............................................................................................................................................................................TCTTATTTTTTCTTTCTTTTTTTTATCT................................................281.000.00------1.00------------------
.........................................................................................................................................................................TTATTTCTTATTTTTTCTAGTT...........................................................221.000.00------------1.00------------
........................................................................................................................................................................TTTATTTCTTATTTTTTCCCAG............................................................221.000.00-1.00-----------------------
...............................................................................................................................................................................CTTATTTTTTCTTTCTTTTTTTTTG..................................................251.000.001.00------------------------
.........................................................................................................................................................................TTATTTCTTATTTTTTCGC..............................................................191.000.00---1.00---------------------
......................................................................................................................................................................................TTTCTTTCTTTTTTTTACACG...............................................211.000.00------1.00------------------
..............................AGAGGTTTTTTTACCACT..........................................................................................................................................................................................................181.000.00-----1.00-------------------
..................................................................................................................................................................................ATTTTTTCTTTCTTTTTTTTAG..................................................2250.200.20-0.20-----------------------

Antisense strand
CTGCGGACTGTAAGGGAAGGTTATTCTGAGAGAGGTTTTTTTACCAGACTTTCACAAGACACTCCTATTTGCTGACAAATAAGGTGTCCACTCAAAATCTCACAAGCAAACCAAAGTGCAAAGACCCAAATGCCATCAGTGAAAGAGACAAAAGTTATAGCTCAAGTTTTTATTTCTTATTTTTTCTTTCTTTTTTTTAGATTTACATGTAGGCATTGAACTCAGCTATGACATTTTGGGAAGCATAATA
.........................................................................................................(((........))).....................((((((((.(((((..(((((....))...)))..))).)).))))))))............................................................
........................................................................................89.............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
............................................................................................CAAAATCTCACAAGCAAATTCT........................................................................................................................................ 222.670.00-------2.33----------------0.33
....GGACTGTAAGGGAAGGTTCACT................................................................................................................................................................................................................................ 221.000.00--------------1.00----------
....................................................CACAAGACACTCCTAGT..................................................................................................................................................................................... 171.000.00-1.00-----------------------
............................................................................................CAAAATCTCACAAGCAATTCT......................................................................................................................................... 211.000.00-------1.00-----------------
..............................................................................................AAATCTCACAAGCAAACGTT........................................................................................................................................ 201.000.00-------1.00-----------------
.....................................................ACAAGACACTCCTATTTGAGGG............................................................................................................................................................................... 221.000.00---------------1.00---------
............................................................................................CAAAATCTCACAAGCAAATTC......................................................................................................................................... 210.670.00-------0.67-----------------
............................................................................................TTTGCTTGTGAGATTTTG............................................................................................................................................ 1830.670.67-------0.67-----------------
......................AAACCTCTCTCAGAAT.................................................................................................................................................................................................................... 1640.250.25----------0.25--------------