ID: uc001gix.1_intron_1_0_chr1_173431594_r.3p
GENE: LOC100506023(1)
chr1:173431544-173431793-


(2)
B-CELL 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
LIVER 		(4)
OTHER

Sense strand
GAAACTTAGTTTGCATATGAAATTCTGGGTTGGAAATTCTTTTCTTTAGGAATATTGAATACTGGCCCCCAATCTTTTCTGGCTTGTAGGGTTTCCACTCAGAGGCCCAATGCTTGTCCGATGGCCTTCCCTTTGTAGGTGACCTGGTCTTTCTTTCTGGCTGTCCTTAACATTTTTTTCTTTTTTCTTTTTTTTTTCAGATGGAGTTTCACTGTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAG
................................................................................(((..((((((((((......)))))))..)))..))).(((((((...(((....))).(((...))).........))))))).....................................................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR343334SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR040031(GSM532916)
G013T. (cervix)
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTTATG.................................................3126.000.00-7.001.0017.001.00------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTAGGC....................................................2618.000.008.00----10.00-----------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTAAAG.................................................2915.000.00-4.004.005.002.00------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTAGGC....................................................2513.000.009.00----4.00-----------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTTTTTG.................................................3212.000.00-7.003.001.001.00------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTTTG...................................................309.000.00-3.003.002.001.00------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTATG..................................................309.000.00-2.00-5.002.00------------
....................................................................................TGTAGGGTTTCCACTCTATG..................................................................................................................................................208.000.00-------3.003.00--2.00-----
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTATG..................................................296.000.00-4.00-1.001.00------------
...................................................................................................................................................................TCCTTAACATTTTTTTCTTTTTTCTTTTTTTTCAG....................................................355.000.00-1.003.00-1.00------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTG......................................................275.000.001.00---3.00-1.00----------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTACC..................................................275.000.003.00----1.001.00----------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTATG...................................................294.000.00-2.001.001.00-------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTTATG.................................................304.000.00-2.002.00--------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTCAACTC...............................................293.000.00------3.00----------
..........................................................................................................................................................................................................................................AGTGGCACGATCTCAGGTAA203.000.00---------3.00-------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTATG...................................................283.000.00---1.002.00------------
..............................................................................CTGGCTTGTAGGGTTTAAAA........................................................................................................................................................202.000.00----------2.00------
..................................................................................................................................................................................................................ACTGTGTCACCCAGGCTGGAGTGCAGGGTG..........302.000.002.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTGGC.........................................................222.000.00-----2.00-----------
....................................................................................................................................................................................................................TGTGTCACCCAGGCTGGAGTGCGGCG............262.000.001.00----1.00-----------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTACC..................................................282.000.002.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTGAG.......................................................262.000.002.00----------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTACCG.................................................262.000.00----2.00------------
................................................................................................................................................................................TTTCTTTTTTCTTTTTTTTTTCACTG................................................262.000.00---1.00-1.00-----------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTACAG..........................................................222.000.00---1.001.00------------
....................................................................................................................................................................................TTTTTTCTTTTTTTTTTCAGATTG..............................................242.000.00-----2.00-----------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTCTG.....................................................262.000.002.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTCCTG..................................................312.000.00--2.00--------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCATTG................................................291.000.00---1.00-------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTCAACTC...............................................281.000.00----1.00------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTCAAGCC...............................................281.000.001.00----------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCTTAG................................................301.000.00--1.00--------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCAAAG................................................301.000.00----1.00------------
..................................................................................................................................................................................TCTTTTTTCTTTTTTTTTTCAAA.................................................231.000.00------1.00----------
....................................................................................................................................................................................................................TGTGTCACCCAGGCTGGAGTGCGAC.............251.000.00-----1.00-----------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCCGG.................................................281.000.00-----1.00-----------
..................................................................................................................................................................................TCTTTTTTCTTTTTTTTTTCATAAA...............................................251.000.00----1.00------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTAAAG......................................................261.000.00----1.00------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTCAG...................................................301.000.001.00----------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTCAAC.................................................261.000.00-----1.00-----------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTCTG.....................................................271.000.00--1.00--------------
.................................................................................................................................................................................TTCTTTTTTCTTTTTTTTTTCAAC.................................................241.000.00-----1.00-----------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTAAAG.....................................................261.000.00----1.00------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTACG...................................................291.000.00--1.00--------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTCACTG................................................281.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTAG....................................................281.000.00--1.00--------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTAG...................................................281.000.00----1.00------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCTCAG................................................291.000.00--1.00--------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTCATTTG...............................................291.000.00-1.00---------------
...................................................................................................................................................................TCCTTAACATTTTTTTCTTTTTTCTCCAG..........................................................291.000.00----1.00------------
.........................................................................................................................................................................................TCTTTTTTTTTTCAGATGGAGTTTCACTG....................................2911.001.00-1.00---------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTCACTG................................................271.000.00-1.00---------------
.....................................................................................................................................................................................................................................AGTGCAGTGGCACGATCTCACCGC241.000.00-----1.00-----------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCTTG.................................................281.000.00--1.00--------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTGGTG........................................................231.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTACA........................................................251.000.001.00----------------
.........................................................................................................................................................................................................................................CAGTGGCACGATCTCATA181.000.00------------1.00----
................................................................................................................................................................................TTTCTTTTTTCTTTTTTTTTTCAATA................................................261.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTCTT....................................................291.000.001.00----------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTAACG.................................................271.000.00--1.00--------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTAATG....................................................271.000.00------1.00----------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTAG.......................................................261.000.001.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTAGC..................................................291.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTG........................................................251.000.00--1.00--------------
........................................................................................................................................................................AACATTTTTTTCTTTTTTCTTTTTTTTTTAG...................................................311.000.00--1.00--------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTATGG.................................................301.000.00----1.00------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTTTTG.................................................311.000.00-1.00---------------
.................................................................................................................................................................................TTCTTTTTTCTTTTTTTTTTCAGACAGG.............................................281.000.001.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTGACT.......................................................241.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTATG......................................................261.000.00--1.00--------------
..............................................................................................................................................................................................TTTTTTTCAGATGGAGTGCC........................................201.000.00-------------1.00---
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTGGAG....................................................271.000.001.00----------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCTTGC................................................301.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTGC.....................................................271.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTTAGG.................................................311.000.00-1.00---------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTCCAAG................................................321.000.00--1.00--------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTAAG..................................................291.000.00-1.00---------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCAAC.................................................291.000.001.00----------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCAATAG...............................................301.000.00------1.00----------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCTCCG................................................301.000.00--1.00--------------
...........................................................TACTGGCCCCCAATCGTTT............................................................................................................................................................................191.000.00----------------1.00
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTAAG.......................................................251.000.00----1.00------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTG.........................................................241.000.00--1.00--------------
................................................................................GGCTTGTAGGGTTTCAAA........................................................................................................................................................181.000.00---------------1.00-
..................................................................................................................................................................................TCTTTTTTCTTTTTTTTTTACTG.................................................231.000.00--1.00--------------
................................................................................................................................................................................TTTCTTTTTTCTTTTTTTTTTCACC.................................................251.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTTTGG..................................................311.000.00--1.00--------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCCTAG................................................291.000.00--1.00--------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTAACG.................................................261.000.00-1.00---------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCCAG.................................................281.000.001.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTGCT...................................................281.000.001.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTAC...........................................................201.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTCTTG..................................................311.000.00--1.00--------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTCAG....................................................281.000.00----1.00------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTCTCG...................................................281.000.00----1.00------------
.....................................................................................................................................................................................TTTTTCTTTTTTTTTTCACAGG...............................................221.000.001.00----------------
..................................................................................................................................................................................TCTTTTTTCTTTTTTTTTTCAACAG...............................................251.000.00----1.00------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTATAT.................................................271.000.00----1.00------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTTTAT.................................................311.000.00-1.00---------------
......................................................................................................................................................................................TTTTCTTTTTTTTTTCAGCTG...............................................211.000.00-----1.00-----------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTACA..................................................251.000.00---1.00-------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTTG...................................................291.000.00-1.00---------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTCAG......................................................271.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTGAG........................................................251.000.001.00----------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCTTC.................................................281.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTCTG....................................................291.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTATT..................................................301.000.00-1.00---------------
.....................................................................................................................................................................................TTTTTCTTTTTTTTTTCAGCTGG..............................................231.000.001.00----------------
.....................................................................................GTAGGGTTTCCACTCGACG..................................................................................................................................................191.000.00-------1.00---------
.................................................................................................................................................................................TTCTTTTTTCTTTTTTTTTTATC..................................................231.000.00-----1.00-----------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTCGC........................................................231.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTTTATT.................................................311.000.00-1.00---------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTATG.........................................................231.000.00--1.00--------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTCCAG.................................................271.000.00----1.00------------
...............................................................................................................................................................................TTTTCTTTTTTCTTTTTTTTTTACTG.................................................261.000.00----1.00------------
....................................................................................................................................................................CCTTAACATTTTTTTATC....................................................................181.000.00------1.00----------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTGTC...................................................301.000.001.00----------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTCATGG................................................281.000.00-1.00---------------
..................................................................................................................................................................................TCTTTTTTCTTTTTTTTTTAACG.................................................231.000.00--1.00--------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGCACGAGCCA..261.000.001.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTAAGC..................................................291.000.001.00----------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTTATAG..................................................301.000.00-1.00---------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTACAC........................................................231.000.00-1.00---------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTAGCG....................................................261.000.001.00----------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCCGA.................................................291.000.001.00----------------
...................................................................................................................................................................................CTTTTTTCTTTTTTTTTTCACC.................................................221.000.00-----1.00-----------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTACG.....................................................261.000.001.00----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTATT..................................................291.000.001.00----------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCTAG.................................................281.000.00--1.00--------------
....................................................................................................................................................................CCTTAACATTTTTTTCTTTTTTCTTTTTTTTTCAG...................................................351.000.00-1.00---------------
..........................................................................................................................................................................CATTTTTTTCTTTTTTCTTTTTTTTATG....................................................281.000.00---1.00-------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTATG.........................................................221.000.001.00----------------
.................................................................................................................................................................................TTCTTTTTTCTTTTTTTTTTCATTT................................................251.000.00-----1.00-----------
..................................................................................................................................................................................................................ACTGTGTCACCCAGGCGGAG....................201.000.00-----1.00-----------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTGGC.......................................................261.000.001.00----------------
.........................................................................................................................................................................ACATTTTTTTCTTTTTTCTTTTTTTTTTTTTA.................................................321.000.00---1.00-------------
.................................................................................................................................................................................TTCTTTTTTCTTTTTTTTTTCAG..................................................2390.670.67--0.110.440.11------------
............................................................................................................................................................................TTTTTTTCTTTTTTCTTTTTTTTTTCAG..................................................2830.670.670.33---0.33------------
.............................................................................................................................................................................TTTTTTCTTTTTTCTTTTTTTTTTCAG..................................................2750.600.60--0.40-0.20------------
..............................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTTTTCAG..................................................2670.430.43--0.29-0.14------------
................................................................................................................................................................................TTTCTTTTTTCTTTTTTTTTTCAG..................................................2490.330.33--0.11-0.22------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTC....................................................2770.290.290.29----------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTCTG..................................................2970.290.29----0.29------------
...........................................................................................................................................................................ATTTTTTTCTTTTTTCTTTTTTTTTTCCCTG................................................3170.140.29-0.14---------------

Antisense strand
GAAACTTAGTTTGCATATGAAATTCTGGGTTGGAAATTCTTTTCTTTAGGAATATTGAATACTGGCCCCCAATCTTTTCTGGCTTGTAGGGTTTCCACTCAGAGGCCCAATGCTTGTCCGATGGCCTTCCCTTTGTAGGTGACCTGGTCTTTCTTTCTGGCTGTCCTTAACATTTTTTTCTTTTTTCTTTTTTTTTTCAGATGGAGTTTCACTGTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAG
................................................................................(((..((((((((((......)))))))..)))..))).(((((((...(((....))).(((...))).........))))))).....................................................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR343334SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR040031(GSM532916)
G013T. (cervix)
............................................................................................................AATGCTTGTCCGATGTTTG........................................................................................................................... 191.000.00--------------1.00--
.........................................................................................................................................................TTTCTGGCTGTCCTTATA............................................................................... 181.000.00------------1.00----
.....................................................................................................................................................................................................................GTGTCACCCAGGCTGGAGTGCAGTGGCACAGG..... 321.000.001.00----------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGCACGATCTGAA 271.000.001.00----------------