ID: uc001gfg.2_intron_3_0_chr1_168160739_f.3p
GENE: (4)
chr1:168165585-168165834+


(1)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(1)
HEART
(2)
LIVER
(3)
OTHER
(1)
SKIN
(1)
UTERUS

Sense strand
ATGTTAAATAGTTTGCACAAGGTTTTGAGGCTAGTTGGAGCTAGGACAAAGAGCTTCTAGTTGAGAGATTTTTATAAACTGTGAATTCAGCCTTATTCCAGGGTTTTTTTGTTTTTTGTTTTCAAATTTTTTCTTTCAGCAAAGTAATAAAATGTTTAATTTTTATTAAAATATTAATGTACCTTTTTTTTTTTTTCCAGAGAGTAATGCCTTCTAGCTTTTTCCTGCTGTTGCGGTTTTTCTTGAGAAT
...................................................................................................(((((..((((((((((((((.................))))))).)))))))..((((((....))))))..........))))).................................................................
..............................................................................................95.......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR029126(GSM416755)
143B. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTGCT..............................................................................................................................2534.000.0029.005.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTGC...............................................................................................................................2426.000.0022.004.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTCAC.....................................................................................................................................1919.000.009.00-10.00------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTTTC..............................................................................................................................2510.000.004.006.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTCTGC...............................................................................................................................248.000.007.001.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTTTTGTTTGCT..............................................................................................................................266.000.004.002.00-------------------
.................................................................................................CCAGGGTTTTTTTGTTTTAT.....................................................................................................................................206.000.002.002.002.00------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTGCC..............................................................................................................................254.000.003.001.00-------------------
................................................................................................TCCAGGGTTTTTTTGTTTTTTGTTTTCA..............................................................................................................................2814.004.00-4.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTTTTGTTTGC...............................................................................................................................254.000.004.00--------------------
.........................................................................................................TTTTTGTTTTTTGTTTTCAAGAGG.........................................................................................................................243.000.003.00--------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCGGAG.................................................213.000.003.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTCGGG...................................................................................................................................203.000.003.00--------------------
....................................................................................................GGGTTTTTTTGTTTTTTGTTTGCT..............................................................................................................................243.000.002.001.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTGCTC.............................................................................................................................263.000.002.001.00-------------------
................................................................................................TCCAGGGTTTTTTTGTTTTTTGTTTTC...............................................................................................................................2713.003.002.001.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTAAT.....................................................................................................................................193.000.00-1.002.00------------------
..................................................................................................CAGGGTTTTTTTGTTTAT......................................................................................................................................182.000.001.00-1.00------------------
.......................................................................................................................................................................................................................AGCTTTTTCCTGCTGTTGCGGTTTTCCT.......282.000.00-2.00-------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCCTTGG................................................222.000.001.00-----1.00--------------
..................................................................................................CAGGGTTTTTTTGTTTTTTGTTTGCTT.............................................................................................................................272.000.002.00--------------------
..................................................................................................CAGGGTTTTTTTGTTTCTT.....................................................................................................................................192.000.001.00-1.00------------------
..................................................................................................CAGGGTTTTTTTGTTATAT.....................................................................................................................................192.000.001.00-1.00------------------
..................................................................................................CAGGGTTTTTTTGTTTTTTGTTTG................................................................................................................................242.000.001.00-1.00------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTCTTA.............................................................................................................................262.000.00-2.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTCTT..............................................................................................................................252.000.00-2.00-------------------
............................................................................................................................................................................................................................TTTCCTGCTGTTGCGGTTTTTCC.......232.000.00-2.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTCATT...............................................................................................................................242.000.00-2.00-------------------
...................................................................................................................................................................................TACCTTTTTTTTTTTTTCCGA..................................................211.000.00-1.00-------------------
......................................................................................................GTTTTTTTGTTTTTTGTTCTGG..............................................................................................................................221.000.001.00--------------------
...................................................................................................................................................................................TACCTTTTTTTTTTTTTCGAC..................................................211.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTCTTT.............................................................................................................................261.000.00-1.00-------------------
...................................................................................................................................................................................TACCTTTTTTTTTTTTTCCGCGG................................................231.000.001.00--------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCCTGGG................................................221.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTTTGC.............................................................................................................................261.000.00-1.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTTTTGTTTTTC..............................................................................................................................261.000.00-1.00-------------------
.........................................................................................................................................................................................................GAGTAATGCCTTCTAGCT...............................1811.001.00-----------1.00---------
...................................................................................................AGGGTTTTTTTGTTTTCTAC...................................................................................................................................201.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTCGC...............................................................................................................................241.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTCTTA..............................................................................................................................251.000.00-1.00-------------------
....................................................................................................GGGTTTTTTTGTTTTTTGTTTTCTGC............................................................................................................................261.000.001.00--------------------
........................................CTAGGACAAAGAGCTTCTAGTAGGG.........................................................................................................................................................................................251.000.00---------------1.00-----
........................................................................................................TTTTTTGTTTTTTGTTTTCACTGA..........................................................................................................................241.000.00-1.00-------------------
.......................................................................................................TTTTTTTGTTTTTTGTCGGC...............................................................................................................................201.000.001.00--------------------
..................................................................................................CAGGGTTTTTTTGTTGCAT.....................................................................................................................................191.000.001.00--------------------
........................................................................................................................................................................................TTTTTTTTTTTTCCAGAGAGCGGC..........................................241.000.00-1.00-------------------
.......................................................................................................TTTTTTTGTTTTTTGTTAGTG..............................................................................................................................211.000.00-1.00-------------------
..............................................................................................ATTCCAGGGTTTTTTTGTTTTTTGTTTC................................................................................................................................281.000.00-1.00-------------------
.......................................................................................................TTTTTTTGTTTTTTGTTTTCAAAGGC.........................................................................................................................261.000.00---1.00-----------------
..................................................................................................CAGGGTTTTTTTGTTTTGC.....................................................................................................................................191.000.00-1.00-------------------
.............................................................................................TATTCCAGGGTTTTTTTGTTTTTTGTTTTC...............................................................................................................................3011.001.001.00--------------------
..................................................................................................CAGGGTTTTTTTGTTGC.......................................................................................................................................171.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTTGTCT............................................................................................................................271.000.00-1.00-------------------
.......................................................................................................................................................................................................................AGCTTTTTCCTGCTGTTGCGGGTT...........241.000.00--------1.00------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTCTT...............................................................................................................................241.000.00-1.00-------------------
........................................................................................................................................................................................TTTTTTTTTTTTCCAGAGCGCC............................................221.000.001.00--------------------
..................................................................................................CAGGGTTTTTTTGTTTCAG.....................................................................................................................................191.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTCTTT...............................................................................................................................241.000.00-1.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTC..................................................................................................................................211.000.00-1.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTCCT.....................................................................................................................................191.000.00--1.00------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCCAGGGG...............................................231.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTGCTT.............................................................................................................................261.000.001.00--------------------
..................................................................................................CAGGGTTTTTTTGTTTTCT.....................................................................................................................................191.000.00--1.00------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCGGC..................................................201.000.001.00--------------------
.....................................................................................................GGTTTTTTTGTTTTTTGTTTGCT..............................................................................................................................231.000.001.00--------------------
........................................................................................................TTTTTTGTTTTTTGTTTTCAAAGGC.........................................................................................................................251.000.00---1.00-----------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCGGG..................................................201.000.001.00--------------------
...................................................................................................................................................................................TACCTTTTTTTTTTTTTCCAGTTA...............................................241.000.00--1.00------------------
................................................................................................................................................................................ATGTACCTTTTTTTTTTGC.......................................................191.000.001.00--------------------
.................................................................................................................................................................................TGTACCTTTTTTTTTTCTGT.....................................................201.000.00-1.00-------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCCGC..................................................201.000.001.00--------------------
.....................................................................................................................................................................................CCTTTTTTTTTTTTTCCAATG................................................211.000.00------1.00--------------
...............................................................................................TTCCAGGGTTTTTTTGTTTTTTGTTTTTT..............................................................................................................................2911.001.001.00--------------------
......................................................................................................GTTTTTTTGTTTTTTGTTTCCC..............................................................................................................................221.000.00-1.00-------------------
...............................................................................................TTCCAGGGTTTTTTTGTTTTTTGTTTT................................................................................................................................2711.001.00-1.00-------------------
......................................................................................................GTTTTTTTGTTTTTTGTTTTGGCC............................................................................................................................241.000.00-1.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTCTTC...............................................................................................................................241.000.00-1.00-------------------
....................................................................................................................................................................................................................................TGTTGCGGTTTTTCTTGAGAA.2111.001.00-------1.00-------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTCC...............................................................................................................................241.000.00-1.00-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTCCTC...............................................................................................................................241.000.001.00--------------------
...................................................................................................AGGGTTTTTTTGTTTCTTC....................................................................................................................................191.000.001.00--------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCCTGTA................................................221.000.00-1.00-------------------
..................................................................................................CAGGGTTTTTTTGTTTCAA.....................................................................................................................................191.000.00-1.00-------------------
....................................................................................................................................................................................ACCTTTTTTTTTTTTTCCTCG.................................................211.000.00------------------1.00--
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTTCTG.............................................................................................................................2620.500.500.50--------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTTC...............................................................................................................................2420.500.50-0.50-------------------
...................................................................................................AGGGTTTTTTTGTTTTTTGTTTTCGG.............................................................................................................................2620.500.50-0.50-------------------
..............................................................................................ATTCCAGGGTTTTTTTG...........................................................................................................................................1730.330.33-------------------0.33-
.................................................................................................................................................................................TGTACCTTTTTTTTTTTTTC.....................................................2090.110.11--------------------0.11

Antisense strand
ATGTTAAATAGTTTGCACAAGGTTTTGAGGCTAGTTGGAGCTAGGACAAAGAGCTTCTAGTTGAGAGATTTTTATAAACTGTGAATTCAGCCTTATTCCAGGGTTTTTTTGTTTTTTGTTTTCAAATTTTTTCTTTCAGCAAAGTAATAAAATGTTTAATTTTTATTAAAATATTAATGTACCTTTTTTTTTTTTTCCAGAGAGTAATGCCTTCTAGCTTTTTCCTGCTGTTGCGGTTTTTCTTGAGAAT
...................................................................................................(((((..((((((((((((((.................))))))).)))))))..((((((....))))))..........))))).................................................................
..............................................................................................95.......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR029126(GSM416755)
143B. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
........................................................................................................................AAGAAAAAATTTGAA................................................................................................................... 1504.004.00----2.002.00---------------
.......................................................................................................................TTTCAAATTTTTTCTTTTCT............................................................................................................... 202.000.00---------1.00------1.00----
...............................TAGTTGGAGCTAGGACAAAG....................................................................................................................................................................................................... 201.000.00-------------1.00-------
.......................................................................................................................TTTCAAATTTTTTCTTTTC................................................................................................................ 191.000.00------------1.00--------
.......................................................................................................................TTTCAAATTTTTTCTTTTCTA.............................................................................................................. 211.000.00-----------------1.00---
............TTGCACAAGGTTTTGGGC............................................................................................................................................................................................................................ 181.000.00----------1.00----------
......................................................................................................................................................................................................................................TTGCGGTTTTTCTTGTGG.. 181.000.00--------------1.00------
.....................GTTTTGAGGCTAGTTTC.................................................................................................................................................................................................................... 171.000.00---1.00-----------------