ID: uc001ger.2_intron_23_0_chr1_167849848_r.5p
GENE: (9)
chr1:167852475-167852724-


(2)
AGO2.ip
(1)
B-CELL
(10)
BRAIN
(4)
BREAST
(14)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
HELA
(4)
LIVER
(1)
OTHER
(1)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
TCCTGAAGATCTTCCAAGGCCAAATCAATAAAGTCTTCATGTTTGACAAGGTAAGTGTGAACTATGGGATGGGAACCTACCAATAGTTTTAGGTTAGCATTCATGGACAAGCACATTGGTGAGAATAGACACAGGAAATTTAACCTAGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCTCTTTGGGAGGCAGAGGTGGGCGGATCACTTGAGGTCAGGAGTTCAAGACCAGACTGGCCAACATA
...................................................................................((((((((((((((..(((.((......(((....)))..........)).)))..))))))))))).)))(((((((....)))))))..............................................................................
...........................................................................76..............................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040042(GSM532927)
G428N. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577590(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
..................................................................................................................................................AGAGGCTGGGCGTGGTGGATTT..................................................................................227.000.00--3.00-2.00-1.00-----1.00----------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGAATT...................................................................................216.000.00------1.00-1.00-1.001.001.00----------------1.00-----------
..................................................................................................................................................AGAGGCTGGGCGTGGTGGATTC..................................................................................225.000.00--2.00-2.00----1.00-------------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGAAT....................................................................................205.000.00--1.00--2.001.00------------------------1.00---------
................................................................................CAATAGTTTTAGGTTTAGC.......................................................................................................................................................194.000.00---4.00-------------------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGGATT...................................................................................213.000.00--------1.00--1.00------------------1.00----------
..................................................................................................................................................AGAGGCTGGGCGTGGTGCATT...................................................................................212.000.00-----1.00-------1.00---------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGTAGT...................................................................................211.000.00---------1.00-------------------------------
........................................................................................................................................................................................................................................ACCAGACTGGCCAACATCAAG211.000.00----------------------------------1.00------
..................................................................................................................................................AGAGGCTGGGCGTGGTTAAT....................................................................................201.000.00-----------------1.00-----------------------
........................................................................................................................................................................................................................................ACCAGACTGGCCAACAAGC191.000.00---------------------1.00-------------------
.............................................................................................................................................................................................................................AGGAGTTCAAGACCAGACTG.........2001.001.00---------------------------------1.00-------
....................................................................................................................................................AGGCTGGGCGTGGTGGCTCACGCCCC............................................................................261.000.001.00----------------------------------------
....................................................AAGTGTGAACTATGGGTGG...................................................................................................................................................................................191.000.00------------------1.00----------------------
...........................................................................................................................................................................................TTGGGAGGCAGAGGTGGCTC...........................................201.000.00-------------------------------------1.00---
....................................................................................................................................................AGGCTGGGCGTGGTGGCCCCC.................................................................................211.000.00-1.00---------------------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGGATTG..................................................................................221.000.00--1.00--------------------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGTGT....................................................................................201.000.00----------1.00------------------------------
............................................................................................................................................................................................................................CAGGAGTTCAAGACCAGAA...........191.000.00--------------------------------1.00--------
...........................................................................................................................................................................................................................TCAGGAGTTCAAGACCAGAAAAA........231.000.00----------------1.00------------------------
......................................................................................................................................................................................................AGGTGGGCGGATCACTTGAGGGGT............................241.000.00---------------------------1.00-------------
....................................................................................................................................................AGGCTGGGCGTGGTGGCTCACGCCGC............................................................................261.000.00-1.00---------------------------------------
...........................................................................................................................................................................................TTGGGAGGCAGAGGTGGGCGGATCACTCG..................................291.000.00-1.00---------------------------------------
...............................................................................................................................................CCTAGAGGCTGGGCGTGGTGGT.....................................................................................221.000.00--------------------------------------1.00--
...................................................................................................................................................................GCTCACGCCTGTAATCCCAGCTCTTCTT...........................................................281.000.00---------------1.00-------------------------
...........................................................................................................................................................................................TTGGGAGGCAGAGGTGGGCGGATCACTCC..................................291.000.00-1.00---------------------------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGATAT...................................................................................211.000.00--1.00--------------------------------------
...............................................................................................................................................................................AATCCCAGCTCTTTGGGAGGCAGAGGTCGG.............................................301.000.00-1.00---------------------------------------
............................................................................................................................................................................TGTAATCCCAGCTCTTTGG...........................................................1901.001.00-------------------------1.00---------------
..................................................................................................................................................AGAGGCTGGGCGTGGCCT......................................................................................181.000.00--------------------1.00--------------------
...........................................................................................................................................................................................TTGGGAGGCAGAGGTGGGCGGGGCA......................................251.000.001.00----------------------------------------
...............................................................................................................................................................................................GAGGCAGAGGTGGGCGGGTA.......................................201.000.00-------------------1.00---------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGAAAA...................................................................................211.000.00----------------------------------------1.00
..................................................................................................................................................AGAGGCTGGGCGTGGTGAGTT...................................................................................211.000.00-------------1.00---------------------------
....................................................................................................................................................AGGCTGGGCGTGGTGGCTCACGTG..............................................................................241.000.00-1.00---------------------------------------
..........................................................................................................................................................................................................GGGCGGATCACTTGAGGTCAGGAGCCCG....................281.000.00---------------1.00-------------------------
.........................................................................................................................................................................GCCTGTAATCCCAGCTCTTTGGGAGGC......................................................2701.001.00----------------------1.00------------------
..................................................................................................................................................AGAGGCTGGGCGTGGTGAATA...................................................................................211.000.00-----------------------------------1.00-----

Antisense strand
TCCTGAAGATCTTCCAAGGCCAAATCAATAAAGTCTTCATGTTTGACAAGGTAAGTGTGAACTATGGGATGGGAACCTACCAATAGTTTTAGGTTAGCATTCATGGACAAGCACATTGGTGAGAATAGACACAGGAAATTTAACCTAGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCTCTTTGGGAGGCAGAGGTGGGCGGATCACTTGAGGTCAGGAGTTCAAGACCAGACTGGCCAACATA
...................................................................................((((((((((((((..(((.((......(((....)))..........)).)))..))))))))))).)))(((((((....)))))))..............................................................................
...........................................................................76..............................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040042(GSM532927)
G428N. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577590(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTTAGCC.......................................................... 245.000.003.002.00---------------------------------------
...............................................................................................................................................................................................................................GAGTTCAAGACCAGACTGGCCATG... 242.000.00-------2.00---------------------------------
...................................................................................................................................................................GCTCACGCCTGTAATCCCAGCTTGCT............................................................. 262.000.002.00----------------------------------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTAGCT........................................................... 232.000.002.00----------------------------------------
..............................................................................................................................................................................................GGAGGCAGAGGTGGGCGGATCACTAGC................................. 271.000.00-1.00---------------------------------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTAGC............................................................ 221.000.001.00----------------------------------------
............................................................................................................................................................................................................................TGGCCAGTCTGGTCTTGAACTCCTG..... 2501.001.00--------------------------1.00--------------
...................................................................................................................................................GAGGCTGGGCGTGGTGGCTCACGCCTGTGGAG....................................................................... 321.000.00-1.00---------------------------------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTTAGC........................................................... 231.000.001.00----------------------------------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTAGCC........................................................... 231.000.001.00----------------------------------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTACC............................................................ 221.000.001.00----------------------------------------
............................................................................................................................................................................................................GCGGATCACTTGAGGTCAAAT......................... 211.000.00------------------------------------1.00----
........................................................................................................................................................................AAGAGCTGGGATTACAGGCG.............................................................. 2001.001.00---------------------------------------1.00-
...........................................................................................................................................................................CTGTAATCCCAGCTCTCGGG........................................................... 201.000.00--1.00--------------------------------------
...........................................................................................................................................................................................................GGCGGATCACTTGAGGTCAATAA........................ 231.000.00------------------------1.00----------------
..........................................................................ACCTACCAATAGTTTGACT............................................................................................................................................................. 191.000.00--------------1.00--------------------------
.........TCTTCCAAGGCCAAAATA............................................................................................................................................................................................................................... 181.000.00--------------1.00--------------------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTTTCGAA......................................................... 251.000.001.00----------------------------------------
.............................................................................................................................................................................................GGGAGGCAGAGGTGGGCGGATCACTT................................... 261.000.001.00----------------------------------------
...............................................................................................................................................................................................................................GAGTTCAAGACCAGACTGGCCAACATG 271.000.00-----------------------1.00-----------------
........................................................................................................................................................................CGCCTGTAATCCCAGCTCTTTAAC.......................................................... 241.000.00-1.00---------------------------------------
.......................................................................................................................................................................ACGCCTGTAATCCCAGCTCTTTAC........................................................... 241.000.001.00----------------------------------------
.................................................................................................................................................................................................GGCAGAGGTGGGCGGATCACTTCCC................................ 251.000.00-1.00---------------------------------------
...................................................................................................................................................GAGGCTGGGCGTGGTGGCTCACGCCTGTGCGG....................................................................... 321.000.00-1.00---------------------------------------
............................................................................................................................................................................TGTAATCCCAGCTCTTTGGGAGGCCGC................................................... 271.000.00-------1.00---------------------------------
...........................................................................................................................................................................CTGTAATCCCAGCTCTCGTG........................................................... 201.000.001.00----------------------------------------
.....................................................................................................................................................GGCTGGGCGTGGTGGCTCACGCCTGTGCGG....................................................................... 301.000.00-1.00---------------------------------------
............................................................................................................................................................................................................................CCAGTCTGGTCTTGAACTCCTG........ 2201.001.00----------------------------1.00------------