ID: uc001gdv.2_intron_1_0_chr1_166827519_r.3p
GENE: (2)
chr1:166827469-166827718-


(15)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(58)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AGGGTAAATATAGTTGTATTATGTTTTATTTCCAGCCTTTAAAAATTAAAATTACAGATTATTCATGTCTACAGGAGTAGACATTGAATGGATTTCTAATTCAATTAAAGATTTTTTAAATAAGATTCTAGCAGGCCACTCCTGTCCTTGTTGCTCAGTTGTCTCTGTGCTGGGACTATTTCTGAAATTTTTATTTTCAGCCCTCCAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCAGCTTCTCACC
....................................................................................(((((((....))).))))...(((((((((..(((((........(((((.....)))))(((....((.(((......))).)).)))..)))))..)))))))))..........................................................
....................................................................................85.........................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR191506(GSM715616)
146genomic small RNA (size selected RNA from . (breast)
SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
.........................................................................................GGATTTCTAATTCAAAGG...............................................................................................................................................18121.000.008.007.007.006.003.004.004.004.004.004.003.003.003.001.00-3.002.003.003.002.002.003.003.003.002.002.001.002.002.002.00-2.002.001.002.002.001.001.00-1.00-1.001.001.00-1.001.00--1.001.00-1.00--1.00-1.001.00----1.001.00-----------------------------
.........................................................................................GGATTTCTAATTCAAAG................................................................................................................................................1713.000.00-2.00--1.00-----1.00--3.00-----1.00----------1.00--1.00-------------1.00------1.00-------1.00-------------------------------
........................................................................................TGGATTTCTAATTCAAAGG...............................................................................................................................................1989.120.250.250.120.380.120.500.250.380.250.250.120.120.120.88--0.120.120.250.120.12----0.380.25-0.120.12-------0.120.620.250.25-0.120.120.120.120.12------------------------0.12--0.250.25-0.120.12-0.12-0.12--0.12--0.12--0.120.120.120.12
........................................................................................TGGATTTCTAATTCAAAG................................................................................................................................................1882.380.250.250.38---0.12------0.12--0.12----------0.12---------0.12---------------------------------0.25-0.25--0.25------0.12---0.12-0.12-----
........................................................................................TGGATTTCTAATTCATAGG...............................................................................................................................................192.000.00----------------1.00---1.00-------------------------------------------------------------------------
............................................................................................................................................................................................TTTTATTTTCAGCCCTTGA...........................................191.000.00-------------------------------------------------------------------1.00--------------------------
.........................................................................................GGATTTCTAATTCAAAGGT..............................................................................................................................................191.000.00------------------------------------------------1.00---------------------------------------------
....................................................................................................................................................................CTGTGCTGGGACTATTTCTGAAAT..............................................................2411.001.00------------------------------------------------------------1.00---------------------------------
........................................................................................TGGATTTCTAATTCAGAG................................................................................................................................................181.000.001.00---------------------------------------------------------------------------------------------
.....................................................................TACAGGAGTAGACATTGAA..................................................................................................................................................................1911.001.00------------------------------------------------------------------1.00---------------------------
............................................................................................................................................................................................................................CCTGTGCTGGTCAGAATC............1820.500.50--------------------------------------------------------------------0.50-------------------------
........................................................................................................................................................................................................................GCTCCCTGTGCTGGTCAGAATC............2220.500.50---------------------------------------------------------------------0.50------------------------
......AATATAGTTGTATTATGT..................................................................................................................................................................................................................................1830.330.33-----------------------------------------------------------------------0.33----------------------
........................................................................................TGGATTTCTAATTCAA..................................................................................................................................................1680.250.25----------------0.12------------------------------------------------------------------0.12----------
........................................................................................TGGATTTCTAATTCAAAT................................................................................................................................................1880.120.25------------------------------------------------------------------------------0.12---------------
........................................................................................TGGATTTCTAATTCAAAGGT..............................................................................................................................................2080.120.25--------------------------------------------------------------------------------0.12-------------
........................................................................................TGGATTTCTAATTCAAGG................................................................................................................................................1880.120.25--0.12-------------------------------------------------------------------------------------------
........................................................................................TGGATTTCTAATTCAAAAG...............................................................................................................................................1980.120.25-----0.12----------------------------------------------------------------------------------------
........................................................................................TGGATTTCTAATTCAACGG...............................................................................................................................................1980.120.25-------------------------------------------------------------------------------------0.12--------
........................................................................................TGGATTTCTAATTCAAAGC...............................................................................................................................................1980.120.25-----------------------------------------------------------------------------------------0.12----

Antisense strand
AGGGTAAATATAGTTGTATTATGTTTTATTTCCAGCCTTTAAAAATTAAAATTACAGATTATTCATGTCTACAGGAGTAGACATTGAATGGATTTCTAATTCAATTAAAGATTTTTTAAATAAGATTCTAGCAGGCCACTCCTGTCCTTGTTGCTCAGTTGTCTCTGTGCTGGGACTATTTCTGAAATTTTTATTTTCAGCCCTCCAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCAGCTTCTCACC
....................................................................................(((((((....))).))))...(((((((((..(((((........(((((.....)))))(((....((.(((......))).)).)))..)))))..)))))))))..........................................................
....................................................................................85.........................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR191506(GSM715616)
146genomic small RNA (size selected RNA from . (breast)
SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
..........................................................CCTGTAGACATGAATAA............................................................................................................................................................................... 1714.004.00--------------4.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................TTTTTATTTTCAGCCCTAAA........................................... 201.000.00------------------------------1.00---------------------------------------------------------------
.....................................................................................................................................GGCCACTCCTGTCCTTGTTGCTCAGTTGTCTGCT................................................................................... 341.000.00--------------------------------------------------------1.00-------------------------------------
.........................................................................................................................................................................................AGGGCTGAAAATAAAAATT.............................................. 1911.001.00--------------------------1.00-------------------------------------------------------------------
.........................................................CTCCTGTAGACATGAATAAT............................................................................................................................................................................. 2011.001.00--------------------------------------1.00-------------------------------------------------------
.....................................................................................................................................................................................................................................GTCAGAATCCAGCTTTAC... 181.000.00-----------------------------------------------------------1.00----------------------------------
.............................................................................................................................................................................................TTTATTTTCAGCCCTTTTT.......................................... 191.000.00-----------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................................................................AAGCTGGATTCTGACCAGCACAGG...... 2411.001.00--------------------------------------------1.00-------------------------------------------------
...........................................................................................................................................CAGAGACAACTGAGCAACAAGGACAGGA................................................................................... 2811.001.00-------------------------------------------------------------1.00--------------------------------
...............................................................................................................................ACAGGAGTGGCCTGCTAG......................................................................................................... 1811.001.00----------------------------------------1.00-----------------------------------------------------
...........................................................................................................................CAGGAGTGGCCTGCTAGAATC.......................................................................................................... 2111.001.00-----------------------------------------------------------------1.00----------------------------
........................................................CTCCTGTAGACATGAATAATC............................................................................................................................................................................. 2111.001.00-----------------------------------------------------1.00----------------------------------------
..............................................................................................................................................................TTGTCTCTGTGCTGGGATGG........................................................................ 201.000.00---------------------------------------------------1.00------------------------------------------
....................................................................................................................................................................................................................GATTCTGACCAGCACAGGGAGCAGTA............ 2620.500.50------------------------------------0.50---------------------------------------------------------
..............................................................CTCCTGTAGACATGA............................................................................................................................................................................. 1570.140.14----------------------------------------0.14-----------------------------------------------------