ID: uc001gcp.2_intron_2_0_chr1_163297353_f.5p
GENE: (3)
chr1:163297303-163297552+


(3)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(9)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
TGAGAGCCTTACAAATAGTATATGGAATTCGACTGGAACATTTTTACATGGTGAGTTTAAGATGAGGCAAAATTATGGGGTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGCTGCAGTTCTGCTTACAATGCATACTGGCTTTTAGGATAGGAAGTTCTTGACTTTATTTTTAACAAATTCAAAGACATATAAAATTAGTGTCACTTACAATGGGATCTTATGCACAATAATGGTTTATATCCATAGATT
.............................................................................(((..((((((((((....((..((..(((.(((..(((....)))...))).))).))..)).....))))))))))..)))..........................................................................................
......................................................................71.............................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577743(Rovira)
total RNA. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343337
..................................................................................TTTTTTGTTTGTTTGTTTGTTTTGTTCTG...........................................................................................................................................295.000.003.002.00-------------------------
....................TATGGAATTCGACTGGA.....................................................................................................................................................................................................................1715.005.00---5.00-----------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTCCG..........................................................................................................................................275.000.002.003.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTTG...............................................................................................................................................274.000.003.001.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTTACCC........................................................................................................................................304.000.003.001.00-------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTCTGC.........................................................................................................................................284.000.001.003.00-------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTTTCT......................................................................................................................................................254.000.00-4.00-------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTGC........................................................................................................................................................244.000.001.003.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTCG...............................................................................................................................................273.000.003.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTTCTT......................................................................................................................................................263.000.002.001.00-------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTCTGC........................................................................................................................................293.000.003.00--------------------------
......................................................................................TTGTTTGTTTGTTTGTTTTGTTTTACCC........................................................................................................................................283.000.002.001.00-------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTCTGG..........................................................................................................................................273.000.003.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTTTCT......................................................................................................................................................263.000.00-3.00-------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTCAAG................................................................................................................................................253.000.003.00--------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTTACC.........................................................................................................................................293.000.002.001.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTCTG..........................................................................................................................................283.000.002.001.00-------------------------
..................................................................................TTTTTTGTTTGTTTGTTTGTTTTGTTTCTG..........................................................................................................................................302.000.00-1.001.00------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTTTTC......................................................................................................................................................262.000.002.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCTTG...............................................................................................................................................262.000.001.00-1.00------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTCTAG................................................................................................................................................252.000.00-2.00-------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTTTTC......................................................................................................................................................252.000.00-2.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTCC...........................................................................................................................................272.000.002.00--------------------------
.............AATAGTATATGGAATTCGACTGG......................................................................................................................................................................................................................2312.002.00------2.00--------------------
.........................................................................................TTTGTTTGTTTGTTTTGTTTTGCCTGA......................................................................................................................................272.000.002.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTTGTTTGTC..........................................................................................................................................322.000.001.001.00-------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCTGG...............................................................................................................................................262.000.002.00--------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTACCC........................................................................................................................................292.000.002.00--------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTCTG..........................................................................................................................................272.000.001.001.00-------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCTC................................................................................................................................................252.000.001.001.00-------------------------
..................TATATGGAATTCGACTGGA.....................................................................................................................................................................................................................1912.002.00----2.00----------------------
...........................................................................................TGTTTGTTTGTTTTGTTTTGCTTCTG.....................................................................................................................................262.000.002.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTG................................................................................................................................................262.000.002.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTC.......................................................................................................................................................242.000.002.00--------------------------
...........CAAATAGTATATGGAATTCGACTGGA.....................................................................................................................................................................................................................2612.002.00-----2.00---------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTTT...............................................................................................................................................272.000.00-2.00-------------------------
.............AATAGTATATGGAATTCGACTG.......................................................................................................................................................................................................................2212.002.00----1.00---------1.00------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTTCGGG.............................................................................................................................................301.000.00-1.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTTC...............................................................................................................................................271.000.001.00--------------------------
..........................................................................................TTGTTTGTTTGTTTTGTTTCTTC.........................................................................................................................................231.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTCCC....................................................................................................................................................271.000.001.00--------------------------
.............AATAGTATATGGAATTCGACTGT......................................................................................................................................................................................................................2311.002.00----------1.00----------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTACC.........................................................................................................................................281.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTCGG....................................................................................................................................................221.000.001.00--------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTCTA...........................................................................................................................................261.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCGTT..............................................................................................................................................281.000.001.00--------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTTACCT........................................................................................................................................301.000.00-1.00-------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTTTACCC........................................................................................................................................271.000.00-1.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTAGG..........................................................................................................................................281.000.00-1.00-------------------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTCTTG..............................................................................................................................................291.000.00--1.00------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTCGC........................................................................................................................................................241.000.00-1.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTTCGAG........................................................................................................................................301.000.001.00--------------------------
..........................................................................................TTGTTTGTTTGTTTTGTTTTGCCG........................................................................................................................................241.000.00-1.00-------------------------
...................................................................................TTTTTGTTTGTTTGTTTGTTTTGTTTTACCC........................................................................................................................................311.000.001.00--------------------------
...........................................................................................TGTTTGTTTGTTTTGTTTTGCTTCCG.....................................................................................................................................261.000.001.00--------------------------
....................TATGGAATTCGACTGTC.....................................................................................................................................................................................................................171.000.00---------------1.00-----------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCGTC...............................................................................................................................................261.000.00-1.00-------------------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTTGCTTG............................................................................................................................................311.000.001.00--------------------------
..................................................................................TTTTTTGTTTGTTTGTTTGTTTTGTTCCT...........................................................................................................................................291.000.00-1.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTCTCG................................................................................................................................................261.000.001.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTTC........................................................................................................................................................241.000.00-1.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTCGC..........................................................................................................................................281.000.001.00--------------------------
..............................................................................GGTTTTTTTTGTTTGTTTGTTTGCCTG.................................................................................................................................................271.000.00-1.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTTCCTG........................................................................................................................................301.000.001.00--------------------------
............................................................................GGGGTTTTTTTTGTTTGTTTCGT.......................................................................................................................................................231.000.001.00--------------------------
................................................................AGGCAAAATTATGGGGTTTTTTTT..................................................................................................................................................................2411.001.00--1.00------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTC................................................................................................................................................261.000.001.00--------------------------
......................................................................................TTGTTTGTTTGTTTGTTTTGTTTCGAT.........................................................................................................................................271.000.00-1.00-------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTGCCTG.......................................................................................................................................301.000.00-1.00-------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTTGC....................................................................................................................................................271.000.00-1.00-------------------------
..............................................................................................TTGTTTGTTTTGTTTTGCTTACA.....................................................................................................................................231.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCCG................................................................................................................................................261.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCGTC...............................................................................................................................................271.000.00-1.00-------------------------
...............................................................................GTTTTTTTTGTTTGTTGGC........................................................................................................................................................191.000.00---------1.00-----------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTACCG........................................................................................................................................291.000.00--1.00------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTTTACCG........................................................................................................................................271.000.00-1.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTCCTG...........................................................................................................................................271.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTCTG.....................................................................................................................................................261.000.001.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTCTGT.......................................................................................................................................................251.000.001.00--------------------------
................................................................................................................................ATGCATACTGGCTTTTAGGATAGGAAG...............................................................................................2711.001.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTAGTT.......................................................................................................................................................241.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCGAG..............................................................................................................................................281.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTTGTTTGTC...............................................................................................................................................321.000.001.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTTTGTTTCTC..........................................................................................................................................311.000.001.00--------------------------
......................................................................................TTGTTTGTTTGTTTGTTTTGTTTTGCTGC.......................................................................................................................................2911.001.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTTGC.......................................................................................................................................................241.000.00-1.00-------------------------
.........................................................................................TTTGTTTGTTTGTTTTGTTTCGG..........................................................................................................................................231.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTCTAC...................................................................................................................................................231.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCCAG..............................................................................................................................................281.000.00--1.00------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTTCTC...................................................................................................................................................281.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTTGTTCTC...........................................................................................................................................311.000.001.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGCTT..........................................................................................................................................................221.000.001.00--------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTTCGTC.........................................................................................................................................261.000.00-1.00-------------------------
..............................................................................GGTTTTTTTTGTTTGTTTGTTTCGAA..................................................................................................................................................261.000.00-1.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCGAG...............................................................................................................................................271.000.001.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTTCC.......................................................................................................................................................251.000.001.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCCTG...............................................................................................................................................261.000.00-1.00-------------------------
......................TGGAATTCGACTGGAACATTTTTACA..........................................................................................................................................................................................................2611.001.00-----------1.00---------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTCTC...............................................................................................................................................281.000.00-1.00-------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTCCC...........................................................................................................................................241.000.001.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTTGCT..........................................................................................................................................................221.000.00-1.00-------------------------
....................................................................................TTTTGTTTGTTTGTTTGTTTTGTTTTATTC........................................................................................................................................301.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTTGTTC..................................................................................................................................................291.000.001.00--------------------------
.............................................................................GGGTTTTTTTTGTTTGTTTGTTTCCTC..................................................................................................................................................271.000.001.00--------------------------
...................................................................................TTTTTGTTTGTTTGTTTGTTTTGTCTTC...........................................................................................................................................281.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTTGTTCTT...........................................................................................................................................311.000.00-1.00-------------------------
........................................................................TTATGGGGTTTTTTTTGTTTGTTCTT........................................................................................................................................................261.000.00-1.00-------------------------
......................................................................................TTGTTTGTTTGTTTGTTTTGTTTTCCGG........................................................................................................................................281.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTCG.....................................................................................................................................................261.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCTGC..............................................................................................................................................281.000.001.00--------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTTCTG..........................................................................................................................................251.000.001.00--------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTCCG...........................................................................................................................................241.000.00-1.00-------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCTCG...............................................................................................................................................261.000.00-1.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTGGCC...............................................................................................................................................271.000.00-1.00-------------------------
........................................................................................................TGTTTTGCTGCAGTTAAAA...............................................................................................................................191.000.00-------1.00-------------------
.............................................................................GGGTTTTTTTTGTTTCCC...........................................................................................................................................................181.000.001.00--------------------------
...........................................................................................TGTTTGTTTGTTTTGTTTTGCCGA.......................................................................................................................................241.000.00-1.00-------------------------
............................................................................................GTTTGTTTGTTTTGTTTTGCCTTC......................................................................................................................................241.000.00-1.00-------------------------
.............................................................................GGGTTTTTTTTGTTTGTTTGTTTGTTCG.................................................................................................................................................281.000.00--1.00------------------------
..........................................................................................TTGTTTGTTTGTTTTGTTTCTGG.........................................................................................................................................231.000.001.00--------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTTTCAAG........................................................................................................................................291.000.001.00--------------------------
............................................................................GGGGTTTTTTTTGTTTGGG...........................................................................................................................................................191.000.00---1.00-----------------------
.........................................................................................TTTGTTTGTTTGTTTTGTTTTGCTCTGA.....................................................................................................................................281.000.00-1.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCG................................................................................................................................................261.000.00--1.00------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTTGAG...................................................................................................................................................281.000.001.00--------------------------
.......................................................................................TGTTTGTTTGTTTGTTTTGTTTCCTG.........................................................................................................................................261.000.001.00--------------------------
..........................................................................ATGGGGTTTTTTTTGTTTGTTTTTC.......................................................................................................................................................251.000.001.00--------------------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTCGC...............................................................................................................................................281.000.001.00--------------------------
...................ATATGGAATTCGACTGGA.....................................................................................................................................................................................................................1811.001.00------------1.00--------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCTAG...............................................................................................................................................261.000.00-1.00-------------------------
..................................................................................TTTTTTGTTTGTTTGTTTGTTTTGTTCGT...........................................................................................................................................291.000.001.00--------------------------
.............................................................................................................................................TTTAGGATAGGAAGTTCTTGA........................................................................................2111.001.00--------1.00------------------
..........................................................................................TTGTTTGTTTGTTTTGTTTTGGTTC.......................................................................................................................................251.000.00-1.00-------------------------
...........................................................................................TGTTTGTTTGTTTTGTTTTGCCTGC......................................................................................................................................251.000.00-1.00-------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCCTG..............................................................................................................................................281.000.00--1.00------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTCGT....................................................................................................................................................271.000.001.00--------------------------
...........................................................................................TGTTTGTTTGTTTTGTTTATAC.........................................................................................................................................221.000.00-1.00-------------------------
............AAATAGTATATGGAATTCGACTGG......................................................................................................................................................................................................................2411.001.00-------------1.00-------------
........................................................................TTATGGGGTTTTTTTTGTTTGTTTGCTT......................................................................................................................................................281.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTCCC...............................................................................................................................................271.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTTGTTCTG................................................................................................................................................311.000.001.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTTTGTCTTG...........................................................................................................................................301.000.00-1.00-------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTACC.......................................................................................................................................................241.000.001.00--------------------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTTCTGG.............................................................................................................................................301.000.00-1.00-------------------------
..............................................................................GGTTTTTTTTGTTTGTTTGCCTG.....................................................................................................................................................231.000.001.00--------------------------
.............................................................................GGGTTTTTTTTGTTTGTTTGTTCTTC...................................................................................................................................................261.000.001.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTCAAC...............................................................................................................................................261.000.001.00--------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTCTTG.......................................................................................................................................................241.000.001.00--------------------------
...............................................................................GTTTTTTTTGTTTGTTTGTTTGTTTTCGAG.............................................................................................................................................301.000.001.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTGCTT...............................................................................................................................................261.000.00-1.00-------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTTTGTTTGTC..........................................................................................................................................311.000.00-1.00-------------------------
.............................................................................GGGTTTTTTTTGTTTCGC...........................................................................................................................................................181.000.001.00--------------------------
...............................................................................GTTTTTTTTGTTTGTTTGTTCTTC...................................................................................................................................................241.000.001.00--------------------------
.........................................................................................TTTGTTTGTTTGTTTTGTTAATG..........................................................................................................................................231.000.00-1.00-------------------------
..........................................................................................TTGTTTGTTTGTTTTGTTTTGCTTCGC.....................................................................................................................................271.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTTTGTTTGC...........................................................................................................................................311.000.001.00--------------------------
.................................................................................TTTTTTTGTTTGTTTGTTTGTTTTGTTTCTG..........................................................................................................................................311.000.001.00--------------------------
.....................................................................................TTTGTTTGTTTGTTTGTTTTGTTCGAG..........................................................................................................................................271.000.00-1.00-------------------------
...........................................................................TGGGGTTTTTTTTGTTTGTTTGTTC......................................................................................................................................................251.000.001.00--------------------------
................................................................................TTTTTTTTGTTTGTTTGTTTGTTCTAG...............................................................................................................................................271.000.00--1.00------------------------
...........................................................................................TGTTTGTTTGTTTTGTTTTGCTGC.......................................................................................................................................2420.500.500.50--------------------------
......CCTTACAAATAGTATATGG.................................................................................................................................................................................................................................1920.500.50----------------0.50----------
..........................................................................................TTGTTTGTTTGTTTTGTTTTGCTGC.......................................................................................................................................2520.500.500.50--------------------------
........................................................................TTATGGGGTTTTTTTTGT................................................................................................................................................................1890.440.44-0.44-------------------------
..................................................GTGAGTTTAAGATGA.........................................................................................................................................................................................1580.120.12--------------------------0.12

Antisense strand
TGAGAGCCTTACAAATAGTATATGGAATTCGACTGGAACATTTTTACATGGTGAGTTTAAGATGAGGCAAAATTATGGGGTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGCTGCAGTTCTGCTTACAATGCATACTGGCTTTTAGGATAGGAAGTTCTTGACTTTATTTTTAACAAATTCAAAGACATATAAAATTAGTGTCACTTACAATGGGATCTTATGCACAATAATGGTTTATATCCATAGATT
.............................................................................(((..((((((((((....((..((..(((.(((..(((....)))...))).))).))..)).....))))))))))..)))..........................................................................................
......................................................................71.............................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577743(Rovira)
total RNA. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343337
..................................................................................................................TTGTAAGCAGAACTG......................................................................................................................... 1551.001.00---------------------0.200.200.200.200.20-
.................................................................................................................TTGTAAGCAGAACTGC......................................................................................................................... 1620.500.50-----------------0.50---------
..................................................................................................................CAGTTCTGCTTACAAGTG...................................................................................................................... 180.200.00--------------------0.20------
..................................................................................................................CAGTTCTGCTTACAAGCGC..................................................................................................................... 190.200.00-------------------0.20-------
..................................................................................................................CAGTTCTGCTTACAAGCG...................................................................................................................... 180.200.00------------------0.20--------