ID: uc001gcf.2_intron_0_0_chr1_162602422_f.5p
GENE: (1)
chr1:162602372-162602621+


(1)
B-CELL 		(5)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(3)
HEART 		(2)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
GATTATAGCTCTGTTTTCTTCTTTCCAAAACTGTGCACCCCTGGATGAAAGTAAGTTATGTGGGTCTTTTTTCTTTATTATTTTTTCTTTTTTGAAAATGAAAGCTCCGCATATACTTCTTTTGGTGTTTCAGGAAAAGTTTTAAAAAGGAAACAGAAGGGCGTTTTAAGTCAGACAAGGAAGGGAACGTAATGAGGCACCACAGACTCGAGAAATCAGATCCCATGTTTTTGGGGGTCTGGATTTATGC
............................................................................(((((.((..((((((((....(((......(((.....((((((((((....))))))...(((((......))))).)))).))).......)))..))))))))..)).))))).........................................................
...................................................................68...........................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191545(GSM715655)
139genomic small RNA (size selected RNA from . (breast)		SRR189782SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................GTCAGACAAGGAAGGGAACG.............................................................20110.0010.004.006.00----------------------------------
................................................................................................................................................................................AAGGAAGGGAACGTAATG........................................................1815.005.00----1.002.00-----------1.00----------------1.00-
........................................................................CTTTATTATTTTTTCTTTACTT............................................................................................................................................................224.000.00--2.002.00--------------------------------
................................................................................................................................................................................AAGGAAGGGAACGTAATGAG......................................................2013.003.002.00------------------1.00----------------
.................................................................................................................................................................................AGGAAGGGAACGTAATGAGG.....................................................2013.003.003.00-----------------------------------
.........................................................................................................................................................................GTCAGACAAGGAAGGGAA...............................................................1812.002.002.00-----------------------------------
........................................................................CTTTATTATTTTTTCTTTATTC............................................................................................................................................................222.000.00--2.00---------------------------------
........................................................................CTTTATTATTTTTTCTTATAG.............................................................................................................................................................212.000.00--2.00---------------------------------
.................................................................................................................................................................................AGGAAGGGAACGTAATGAG......................................................1912.002.00-------1.00--------1.00-------------------
..................................................................................................................................................................................................AGGCACCACAGACTCGAGA.....................................1911.001.00---------------------1.00--------------
............................................................TGGGTCTTTTTTCTTTGC............................................................................................................................................................................181.000.00--------1.00---------------------------
........................................................................CTTTATTATTTTTTCTTTATCT............................................................................................................................................................221.000.00---1.00--------------------------------
................................................................TCTTTTTTCTTTATTATTATTG....................................................................................................................................................................221.000.00------1.00-----------------------------
......................................................................TTCTTTATTATTTTTTCTATT...............................................................................................................................................................211.000.00------1.00-----------------------------
.....................................................................................................................................................................................AGGGAACGTAATGAGGCA...................................................1811.001.00-----------------------------1.00------
..............................................................................................................................................................................ACAAGGAAGGGAACGTAATG........................................................2011.001.00---------1.00--------------------------
................................................................TCTTTTTTCTTTATTATTTTTTCTTTTG..............................................................................................................................................................281.000.00---1.00--------------------------------
.................................................................................................................................................AAAGGAAACAGAAGGGCTAG.....................................................................................201.000.00----1.00-------------------------------
................................................................TCTTTTTTCTTTATTATTTTTTCTTTTTTG............................................................................................................................................................3011.001.00--1.00---------------------------------
................................................................TCTTTTTTCTTTATTATTTTTTCTTTTTTTTTG.........................................................................................................................................................331.000.00----------1.00-------------------------
.........................................................................................................................................................CAGAAGGGCGTTTTATCGT..............................................................................191.000.00-----------------------1.00------------
................................................................................................................................................................................AAGGAAGGGAACGTAAT.........................................................1711.001.00----1.00-------------------------------
........................................................................CTTTATTATTTTTTCTTTTTTTTG..........................................................................................................................................................241.000.00---1.00--------------------------------
.......................................................................................................................................................................................................................................TGGGGGTCTGGATTTTGTA191.000.00----------------------------1.00-------
.............TTTTCTTCTTTCCAAAACTGTGC......................................................................................................................................................................................................................2311.001.00------------------1.00-----------------
........................................................................................................................................................................................GAACGTAATGAGGCACCACAGACTC.........................................2511.001.00---------------------------------1.00--
..................................................................................................................ACTTCTTTTGGTGTTCAGA.....................................................................................................................191.000.00--------------------------------1.00---
.................................................................................................................................................................................AGGAAGGGAACGTAATGAGGC....................................................2111.001.00---------------1.00--------------------
........................................................................................................................................................................................GAACGTAATGAGGCACCAC...............................................1911.001.00-1.00----------------------------------
...........................AAACTGTGCACCCCTGGATGAAACCTC....................................................................................................................................................................................................271.000.00------------------------------1.00-----
.........................CAAAACTGTGCACCCCTGGATGA..........................................................................................................................................................................................................2311.001.00--------------------------1.00---------
.........................................................................TTTATTATTTTTTCTTTTTTTGGC.........................................................................................................................................................241.000.00--------1.00---------------------------
..................................................................TTTTTTCTTTATTATTTTTTTTTC................................................................................................................................................................241.000.00-------------------------1.00----------
...............................................................................................................................................................GGCGTTTTAAGTCAGACAAGGAA....................................................................2311.001.00---------------------------1.00--------
..................................GCACCCCTGGATGAAACC......................................................................................................................................................................................................181.000.00-------1.00----------------------------
......................................................................TTCTTTATTATTTTTTCTCTTT..............................................................................................................................................................221.000.00---------1.00--------------------------
................................................................................................................................................................................AAGGAAGGGAACGTAATGAGGCACC.................................................2511.001.00-----------1.00------------------------
.........................CAAAACTGTGCACCCCTGGATG...........................................................................................................................................................................................................2211.001.00-------------------------------1.00----
.................................................................................................................................................................................AGGAAGGGAACGTAATGAGGCACCACA..............................................2711.001.00-------------1.00----------------------
......................TTCCAAAACTGTGCACCCCTGGATGAAAC.......................................................................................................................................................................................................291.000.00------------1.00-----------------------
...................TCTTTCCAAAACTGTGC......................................................................................................................................................................................................................1720.500.50-----------------------------------0.50

Antisense strand
GATTATAGCTCTGTTTTCTTCTTTCCAAAACTGTGCACCCCTGGATGAAAGTAAGTTATGTGGGTCTTTTTTCTTTATTATTTTTTCTTTTTTGAAAATGAAAGCTCCGCATATACTTCTTTTGGTGTTTCAGGAAAAGTTTTAAAAAGGAAACAGAAGGGCGTTTTAAGTCAGACAAGGAAGGGAACGTAATGAGGCACCACAGACTCGAGAAATCAGATCCCATGTTTTTGGGGGTCTGGATTTATGC
............................................................................(((((.((..((((((((....(((......(((.....((((((((((....))))))...(((((......))))).)))).))).......)))..))))))))..)).))))).........................................................
...................................................................68...........................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191545(GSM715655)
139genomic small RNA (size selected RNA from . (breast)		SRR189782SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................CTGAAACACCAAAAGAAG..................................................................................................................... 1812.002.002.00-----------------------------------
....................................................................................................................................................................CTTCCTTGTCTGACTTAAA................................................................... 1911.001.00-----------1.00------------------------
.............................................................................................................................................................................................................ATCTGATTTCTCGAGT............................. 1611.001.00------------------------1.00-----------
....................................................................................................................................................................................................TTTCTCGAGTCTGTGGTGC................................... 1911.001.00--------------1.00---------------------
.............TTTTCTTCTTTCCAAAGGT.......................................................................................................................................................................................................................... 191.000.00----------------------1.00-------------
.....................................................................................................................................GAAAAGTTTTAAAAAGGAAATTTT............................................................................................. 241.000.00----------1.00-------------------------
.......................................................................TCTTTATTATTTTTTCTTTTTTTCAG......................................................................................................................................................... 261.000.00--------------------1.00---------------
.................................................CCCACATAACTTACT.......................................................................................................................................................................................... 1570.140.14------------0.14-----------------------