ID: uc001gbh.2_intron_3_0_chr1_161692800_f
GENE: (4)
chr1:161692750-161693206+


(8)
B-CELL 		(9)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN

Sense strand
CTTCCTCTTCCTTCTTTCCTGTTCTGCAGTTCCAAGCAGTGGGCAAGCTGGTGAGTCTTATAAATTTCTCATCCCAATTTTCTACAGCTTCCACTCCAACCCCCTAAGTGACCTTTTCAAGTAGACTCCTCACTTCTTGGCTGCGCTGGGATAGTGTCTCTTCCCACTCTCGTCAACCCCTGGGACTAAATTTGCTTGAAGGCATTTAGAAATGGGTGCTGGCTGATGGACTGGTAGTCTGTAACCCAATGAATGTGATCTCCTCTCCTGCAGGGATGGGTTAGTACATGGGCTGGGGCCTGCGAGCTGGGGTTTCCTAAGATTTCCCAAACTCAGGTCGTTTCTTTGGGCACCTCACCTTGATTCTCTTTGCATGCTGCCCCCTCTCACCCCACTCCCCACCCCAGCTACTCTGGAGAAGCCCATATTGTCTCTACATCCACCTTGGACCACCATC
..........................................................................................................................................((((((..(((((.((.....)))))))...(((((..((....)).........(((....((((((((....))))))))))).)))))....)))))).....((((.....((((....(((.(((.....))).)))....)))))))).....................................................................................................................................................................
.......................................................................................................................................136..........................................................................................................................................................293..................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040037(GSM532922)
G243T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACCA........................................................................................................................................................................1814.000.001.001.00-1.00---1.00-2.002.00--1.00-1.00----------------1.001.001.00-1.00-------
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACA.........................................................................................................................................................................17113.0013.003.00-1.00--2.002.00-1.00--1.00----1.00---------1.00----------1.00------
..............................................................................................................................................................................................................................................................................CAGGGATGGGTTAGTACCA........................................................................................................................................................................1915.001.00-1.00-1.00---------1.00---------1.00----1.00---------------
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTAAA.........................................................................................................................................................................173.000.00--------1.00--1.00---------------1.00----------------
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACAA........................................................................................................................................................................1813.0013.00-1.00-------------1.00---------------1.00------------
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACC.........................................................................................................................................................................173.000.00--1.00---------2.00-------------------------------
..............................................................................................................................................................................................................................................................................CAGGGATGGGTTAGTACA.........................................................................................................................................................................1812.002.00---------------------1.00-----------------1.00----
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACACCA......................................................................................................................................................................2012.0013.00--------------1.00--------------------1.00--------
...................TGTTCTGCAGTTCCAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00--------------
..............................................................................................................................................................................................................................................................................CAGGGATGGGTTAGTACT.........................................................................................................................................................................1811.001.00-------1.00------------------------------------
..............................................................................................................................................................................................................................................................................CAGGGATGGGTTAGTAC..........................................................................................................................................................................1711.001.00--1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................GCAGGGATGGGTTAGTATCGT.......................................................................................................................................................................211.000.00----1.00---------------------------------------
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACAC........................................................................................................................................................................1811.0013.00----------------------1.00---------------------
...............................................................................................................................................................................................................................................................................AGGGATGGGTTAGTACAT........................................................................................................................................................................1811.001.00--------------1.00-----------------------------
............................................................................................................................................CTGCGCTGGGATAGTCGGC..........................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00-------------
.............................................................................................................................................................................................................................................................................GCAGGGATGGGTTAGTCG..........................................................................................................................................................................181.000.00----1.00---------------------------------------
..............................TCCAAGCAGTGGGCAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50-----------------0.50--------------------------
........................................................................................................................................................................................................................................................................................TTAGTACATGGGCTGG.................................................................................................................................................................1630.330.33----------------------------------------0.33---
.............................................................................................................................................................................................................................................................................GCAGGGATGGGTTAG.............................................................................................................................................................................1590.220.22-----------------------------------------0.22--
.............................................................................................................................................................................................................................................................................GCAGGGATGGGTTAGAAAA.........................................................................................................................................................................1990.110.22-------------------------------------------0.11
.............................................................................................................................................................................................................................................................................GCAGGGATGGGTTAGACA..........................................................................................................................................................................1890.110.22------------------0.11-------------------------

Antisense strand
CTTCCTCTTCCTTCTTTCCTGTTCTGCAGTTCCAAGCAGTGGGCAAGCTGGTGAGTCTTATAAATTTCTCATCCCAATTTTCTACAGCTTCCACTCCAACCCCCTAAGTGACCTTTTCAAGTAGACTCCTCACTTCTTGGCTGCGCTGGGATAGTGTCTCTTCCCACTCTCGTCAACCCCTGGGACTAAATTTGCTTGAAGGCATTTAGAAATGGGTGCTGGCTGATGGACTGGTAGTCTGTAACCCAATGAATGTGATCTCCTCTCCTGCAGGGATGGGTTAGTACATGGGCTGGGGCCTGCGAGCTGGGGTTTCCTAAGATTTCCCAAACTCAGGTCGTTTCTTTGGGCACCTCACCTTGATTCTCTTTGCATGCTGCCCCCTCTCACCCCACTCCCCACCCCAGCTACTCTGGAGAAGCCCATATTGTCTCTACATCCACCTTGGACCACCATC
..........................................................................................................................................((((((..(((((.((.....)))))))...(((((..((....)).........(((....((((((((....))))))))))).)))))....)))))).....((((.....((((....(((.(((.....))).)))....)))))))).....................................................................................................................................................................
.......................................................................................................................................136..........................................................................................................................................................293..................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040037(GSM532922)
G243T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
.....................................................................................................................................................................................................................................................................................................................................................................................................CCCCACTCCCCACCCCACA................................................. 191.000.00------------------------1.00-------------------
.....................................................................................................................................................................................................GAAGGCATTTAGAAAGATA................................................................................................................................................................................................................................................. 191.000.00----------------1.00---------------------------
.............................................................................................................................................................................................................................................................................................................................................................................CTCTTTGCATGCTGCCCGG......................................................................... 191.000.00--------------------1.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTTGGACCACCTGCG 191.000.00------------------1.00-------------------------
...............................................................................................................................................CGCTGGGATAGTGTCTCA........................................................................................................................................................................................................................................................................................................ 181.000.00-------------------------1.00------------------
.............................................................................................................................................................CTCTTCCCACTCTCGCG........................................................................................................................................................................................................................................................................................... 171.000.00--------------------------------------1.00-----
..............................................................................TTTCTACAGCTTCCACTG......................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------1.00------------------------
...................TGTTCTGCAGTTCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------1.00--------------------------
...CAGGAAAGAAGGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1870.140.14------------------------------------------0.14-