| (3) BREAST | (12) CELL-LINE | (2) CERVIX | (4) OTHER | (1) RRP40.ip | (1) SKIN |
| TCTCCTTCACCTGGCGCTACCAGCCCGAAGGGGGCAGAGATGCCATTTCGGTGAGTGCCTGGGGGAATCCTGGGGTTGGATAACAGAAAGTGCTTCAAAGAACAACAAAAAAGATAACTTGGGCTAAGGAGGGGGAAATCCTTTTTGAGCCATAACCCCAACTTTGGCAAGGTAAATGACAGTCTTTGTCACCCTGACTACATTGTCCTCCCTTCTCCAGCACTACCCTTTCCAGCCCAAGATCCCTTACCCTGAGGCTGGAGCGAAGCTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTTCTTTCTGTAACAAATTATGGAGCTAAGCTTTGACAGCTGTGTTCTCATTAGGGTCCTCTCACATGCTTCCCCTCATTCCTCATAGATCTTCCACTATGCCAAGGGACAACCCTACATTGACGAGGTGGGGACCTT ....................................................................................................................................................................................................................................................................((((..((((((...............(((.((((............)))).)))....))))))..))))......................................................................................................... ....................................................................................................................................................................................................................................................................261.....................................................................333..................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189784 | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR189785 | SRR040008(GSM532893) G727N. (cervix) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR040038(GSM532923) G531N. (cervix) | TAX577738(Rovira) total RNA. (breast) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR191394(GSM715504) 23genomic small RNA (size selected RNA from t. (breast) | SRR038857(GSM458540) D20. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................................... | 27 | 13.00 | 0.00 | 13.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................................... | 28 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCAAG............................................................................................................................................... | 27 | 5.00 | 0.00 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCTGC............................................................................................................................................... | 27 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTCCAG............................................................................................................................................... | 28 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCGG............................................................................................................................................ | 30 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCCAG............................................................................................................................................... | 27 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTGGG................................................................................................................................................. | 26 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCGGG............................................................................................................................................... | 27 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCTTTTTAGG..................................................................................................................................... | 28 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTCGCC................................................................................................................................................... | 24 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTCATC...................................................................................................................................... | 28 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................CAAATTATGGAGCTATTA........................................................................................................... | 18 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCCTC............................................................................................................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCTTG............................................................................................................................................... | 27 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGCTTTTTTCTGC................................................................................................................................... | 25 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCGG................................................................................................................................................ | 26 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTTTCCAG...................................................................................................................................... | 29 | 2.00 | 0.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTGCTTTTTTCCGC................................................................................................................................... | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTTTCGGC...................................................................................................................................... | 29 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCAGC............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTGCTTTTTTTCGC................................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................................TTTTTTGCTTTTTTCTTTCGAG............................................................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCTAG............................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................................TTTTTTGCTTTTTTCTTTGC................................................................................................................................. | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTCCCC.................................................................................................................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTGCTTTTTTCTTGAG................................................................................................................................. | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTCCCG............................................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTGCTTTTTTGCTC................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTGGG............................................................................................................................................. | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCCCG........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................TTTTTTTTTTGCTTTTTTCTTTGGAG............................................................................................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCGGC............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................................TTTTTTTTTTTGCTTTTTTCTCCTT................................................................................................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................................................................................TTTTTTTTGCTTTTTTCTTTACTC............................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTCGG.................................................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTGCTTTTTGCG..................................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTTGTTGG.......................................................................................................................................... | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTGTAG................................................................................................................................................ | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTCCCC...................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTGCTTTTTAACG.................................................................................................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGCTTTCAGC...................................................................................................................................... | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTGCTTTTTTGCC.................................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGCTTTTTTCGC.................................................................................................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTTCTGG........................................................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTGCTTGGCG....................................................................................................................................... | 33 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................................................................................TTTTTTTGCTTTTTTCGTTT.................................................................................................................................. | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTTTTTTAGG.................................................................................................................................... | 31 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTGCTTTTTACG..................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTGCTTTGGGG...................................................................................................................................... | 34 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCGCC........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................TTTTTTTTTGCTTTTTTCGAG................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTGCGCGG......................................................................................................................................... | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTCGC.................................................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGCTTTCCCC...................................................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTGCG..................................................................................................................................... | 34 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................................. | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................CCGAAGGGGGCAGAGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTGCAACC......................................................................................................................................... | 33 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTCTGG............................................................................................................................................... | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTCTTT............................................................................................................................................. | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTTTTTCGC................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTGCTTTTTAGG..................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTGGGT........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTTTGGCT.................................................................................................................................... | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTGCTTTTTTCTGCC.................................................................................................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTGGGC........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCATG............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTTGGG............................................................................................................................................ | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTGTTTT.......................................................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................TTTTTTTTTGCTTTTTTCTGCTT................................................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTCTTC.................................................................................................................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................................TTTTTTTTTTTGCTTTTTTCCGGG.................................................................................................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTGGGG................................................................................................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCAAC............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTCCCC............................................................................................................................................ | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................TTTTGCTTTTTTCTTTCTCTG.............................................................................................................................. | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCATG........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCCGG............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................CGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTGTT........................................................................................................................................... | 34 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTG....................................................................................................................................... | 33 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTCGG................................................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTGGCAG.......................................................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................GAAGCTTTTTTTTTTTTTTTTTTCTGC................................................................................................................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTGTT................................................................................................................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCTGG............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTCCAG...................................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................TTTTTTTTTTGCTTTTTTCTTCTTG................................................................................................................................ | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................GAAGCTTTTTTTTTTTTTTTTTTTGGG................................................................................................................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................GAAGCTTTTTTTTTTTTTTTTTTTTTTTTGAAAC.......................................................................................................................................... | 34 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCGGG........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTGTT............................................................................................................................................. | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................GAAGCTTTTTTTTTTTTTTTTTTTTTTGGG.............................................................................................................................................. | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGCTTTTTTCCG.................................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................CGAAGCTTTTTTTTTTTTTTTTTTTTTTGT............................................................................................................................................... | 30 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTCCCG...................................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCTTTTTTCCTC................................................................................................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................CGAAGCTTTTTTTTTTTTTTTTTTTTTGGG............................................................................................................................................... | 30 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTTGGGTT.......................................................................................................................................... | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTTTTTGGAG.................................................................................................................................... | 31 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCGTG........................................................................................................................................... | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTGGGG............................................................................................................................................ | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................TTTTTTTTTTGCTTTTTTCCG.................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTCTAG................................................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTGGACT.......................................................................................................................................... | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTCCAG...................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCTGG........................................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTGCTTTTTTCTTGG.................................................................................................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTCGCC............................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTGGAC............................................................................................................................................ | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................AGCTTTTTTTTTTTTTTTTTTTTTTTTCTC............................................................................................................................................ | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................AAGCTTTTTTTTTTTTTTTTTTTTTTTTGC............................................................................................................................................. | 30 | 6 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................CGAAGCTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................ | 29 | 6 | 0.17 | 0.17 | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGCTTTTTTC...................................................................................................................................... | 30 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGCTTTTTTCTGCC.................................................................................................................................. | 29 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGCTTTTTTCT..................................................................................................................................... | 26 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGCTTTTTTCTGC................................................................................................................................... | 28 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TCTCCTTCACCTGGCGCTACCAGCCCGAAGGGGGCAGAGATGCCATTTCGGTGAGTGCCTGGGGGAATCCTGGGGTTGGATAACAGAAAGTGCTTCAAAGAACAACAAAAAAGATAACTTGGGCTAAGGAGGGGGAAATCCTTTTTGAGCCATAACCCCAACTTTGGCAAGGTAAATGACAGTCTTTGTCACCCTGACTACATTGTCCTCCCTTCTCCAGCACTACCCTTTCCAGCCCAAGATCCCTTACCCTGAGGCTGGAGCGAAGCTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTTCTTTCTGTAACAAATTATGGAGCTAAGCTTTGACAGCTGTGTTCTCATTAGGGTCCTCTCACATGCTTCCCCTCATTCCTCATAGATCTTCCACTATGCCAAGGGACAACCCTACATTGACGAGGTGGGGACCTT ....................................................................................................................................................................................................................................................................((((..((((((...............(((.((((............)))).)))....))))))..))))......................................................................................................... ....................................................................................................................................................................................................................................................................261.....................................................................333..................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189784 | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR189785 | SRR040008(GSM532893) G727N. (cervix) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR040038(GSM532923) G531N. (cervix) | TAX577738(Rovira) total RNA. (breast) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR191394(GSM715504) 23genomic small RNA (size selected RNA from t. (breast) | SRR038857(GSM458540) D20. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................................................................................................................................................................................CACATGCTTCCCCTCTT........................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................ACCCCAACTTTGGCAACGCG...................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................CGAAGCTTTTTTTTTGG............................................................................................................................................................ | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..............................................................................................................................................................................................................CCTCCCTTCTCCAGCCGG.................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................CCACTATGCCAAGGGTGAG.......................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTGCTTTTCCCC..................................................................................................................................... | 34 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ................................................................................................................................................................................................................................ACCCTTTCCAGCCCATATC................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................................TTTTTTTTTTTGCTTTTTGGAC.................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................GTCCTCCCTTCTCCAGCACTACCCTG.............................................................................................................................................................................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................................TTTTTTTTTTTGCTTTTTTCCAA................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGCTTTTTTAAT.................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGCTTTTTCG...................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGCTTTTTCGT..................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................TCTCACATGCTTCCCTTG............................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................CCTGGGGGAATCCTGAAC......................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ................................................................................................AAAGAACAACAAAAAAGATATGTG............................................................................................................................................................................................................................................................................................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................GACAATGTAGTCAGGGTG..................................................................................................................................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |