ID: uc001fzb.1_intron_0_0_chr1_161192313_r.5p
GENE: APOA2(1)
chr1:161192940-161193189-


(2)
CELL-LINE 		(1)
CERVIX 		(14)
LIVER 		(4)
SKIN

Sense strand
GAAGCTGCTCGCAGCAACTGTGCTACTCCTCACCATCTGCAGCCTTGAAGGTGGGTGTGATATGGAGAGGGGGCCAAAAGGGAGAATGTGCTGGTGGTTATAGCTACCTATCTGCCTGTGCTCTTATATCCAGGTCTGGCAACCAAAGGGCTCAAAAGGAAGATCATTCCCTCTCTAAAGCCCAGAAAGCCCATCCAAAGATCTGGCTGGATACCTTTTTGGGGAGGGGGCAGAGAGCTGGGGTGGGTAC
.........................................................................((...(((.(((.......((((((....))))))..))).)))..((((((....(((....)))......))))))......))...........................................................................................
........................................................................73............................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................AAAGGGCTCAAAAGGAAGA.......................................................................................1916.006.002.004.00-------------------
................................................................................................................................................AAAGGGCTCAAAAGGAAGATCA....................................................................................2216.006.003.003.00-------------------
......GCTCGCAGCAACTGTGCTACT...............................................................................................................................................................................................................................2116.006.001.005.00-------------------
................................................................................................................................................AAAGGGCTCAAAAGGAAGATCAT...................................................................................2315.005.005.00--------------------
...............AACTGTGCTACTCCTCACCATCTGCAGC...............................................................................................................................................................................................................2814.004.003.00-----1.00--------------
............AGCAACTGTGCTACTCCTCACC........................................................................................................................................................................................................................2214.004.001.00------1.00-2.00-----------
..AGCTGCTCGCAGCAACTGTGCTACTCCTCACCAT......................................................................................................................................................................................................................3414.004.00---2.002.00----------------
.............................TCACCATCTGCAGCCTTGAAGGAG.....................................................................................................................................................................................................244.000.001.001.00---------2.00---------
..AGCTGCTCGCAGCAACTGTGCTACTC..............................................................................................................................................................................................................................2613.003.001.002.00-------------------
................................................................................................................................................AAAGGGCTCAAAAGGAAGATCATTC.................................................................................2513.003.002.001.00-------------------
...............AACTGTGCTACTCCTCACCAT......................................................................................................................................................................................................................2113.003.001.00----2.00---------------
.............GCAACTGTGCTACTCCTCACCATA.....................................................................................................................................................................................................................2413.001.002.00-1.00------------------
.............GCAACTGTGCTACTCCTCATA........................................................................................................................................................................................................................213.000.001.001.001.00------------------
...GCTGCTCGCAGCAACTGTGCTACT...............................................................................................................................................................................................................................2413.003.001.001.00---1.00---------------
.................................................................................................................................................AAGGGCTCAAAAGGAAGATCATT..................................................................................2312.002.001.001.00-------------------
.............................................................................AAGGGAGAATGTGCTGGTGGTT.......................................................................................................................................................2212.002.002.00--------------------
.............GCAACTGTGCTACTCCTCACCATCTGCAGCC..............................................................................................................................................................................................................3112.002.002.00--------------------
...............................................................................................................................................CAAAGGGCTCAAAAGGAAGA.......................................................................................2012.002.00-2.00-------------------
...................................................................................................................................AGGTCTGGCAACCAAAGG.....................................................................................................1822.002.001.500.50-------------------
.............GCAACTGTGCTACTCCTCACCATCTGCA.................................................................................................................................................................................................................2812.002.001.00---------1.00----------
.................................................................................................................................................AAGGGCTCAAAAGGAAGATA.....................................................................................202.000.002.00--------------------
............AGCAACTGTGCTACTCCTCACCA.......................................................................................................................................................................................................................2312.002.002.00--------------------
..........................TCCTCACCATCTGCAGCCTTGAAG........................................................................................................................................................................................................2412.002.00-1.001.00------------------
...............AACTGTGCTACTCCTCACC........................................................................................................................................................................................................................1912.002.00--------2.00------------
.....................GCTACTCCTCACCATCTGCAGCCT.............................................................................................................................................................................................................2412.002.001.00------------1.00-------
....................................................................................AATGTGCTGGTGGTTATA....................................................................................................................................................1812.002.002.00--------------------
.............................................................................................................................................ACCAAAGGGCTCAAAAGGAAGATCAT...................................................................................2612.002.00-2.00-------------------
..............................CACCATCTGCAGCCTTGAAG........................................................................................................................................................................................................2012.002.00-2.00-------------------
...................GTGCTACTCCTCACCATCTGCAGCC..............................................................................................................................................................................................................2512.002.002.00--------------------
........................ACTCCTCACCATCTGCAGCCTTG...........................................................................................................................................................................................................2312.002.002.00--------------------
.....TGCTCGCAGCAACTGTGCTACT...............................................................................................................................................................................................................................2212.002.002.00--------------------
.................................................................................................................................................AAGGGCTCAAAAGGAAGA.......................................................................................1812.002.002.00--------------------
.................................................................................................................................................AAGGGCTCAAAAGGAAGATCATTC.................................................................................2412.002.001.001.00-------------------
..AGCTGCTCGCAGCAACTGTGCTAC................................................................................................................................................................................................................................2412.002.00-2.00-------------------
...............................................................................................................................ATCCAGGTCTGGCAACCAAAGGGCTC.................................................................................................2612.002.002.00--------------------
...GCTGCTCGCAGCAACTGTGCTACTCCTCACCA.......................................................................................................................................................................................................................3212.002.00---1.001.00----------------
...................GTGCTACTCCTCACCATCTGCA.................................................................................................................................................................................................................2212.002.001.00-1.00------------------
............................CTCACCATCTGCAGCCTTGAAGTACT....................................................................................................................................................................................................262.000.00------------2.00--------
............AGCAACTGTGCTACTCCTCACCATA.....................................................................................................................................................................................................................2512.001.001.00-----1.00--------------
..................................................................................................................................CAGGTCTGGCAACCAAAGG.....................................................................................................1912.002.00-2.00-------------------
.............GCAACTGTGCTACTCCTCACC........................................................................................................................................................................................................................2112.002.00-1.00--------1.00----------
...GCTGCTCGCAGCAACTGTGCTACTCCTCACCAT......................................................................................................................................................................................................................3312.002.00---1.001.00----------------
...............AACTGTGCTACTCCTCACCATCTGCA.................................................................................................................................................................................................................2612.002.00-------2.00-------------
...GCTGCTCGCAGCAACTGTGCTACTC..............................................................................................................................................................................................................................2512.002.00-2.00-------------------
..AGCTGCTCGCAGCAACTGTGCTACT...............................................................................................................................................................................................................................2512.002.002.00--------------------
.................................................................................................................................................AAGGGCTCAAAAGGAAGATCAT...................................................................................2212.002.002.00--------------------
...........CAGCAACTGTGCTACTCCTCACCATCTGCAG................................................................................................................................................................................................................3112.002.00---1.001.00----------------
.AAGCTGCTCGCAGCAACTGTGCTAC................................................................................................................................................................................................................................2512.002.001.001.00-------------------
...............................................................................GGGAGAATGTGCTGGTGGTTA......................................................................................................................................................2111.001.00-1.00-------------------
....................................................................................................................................GGTCTGGCAACCAAAGGGCTCAAA..............................................................................................2411.001.00-1.00-------------------
.....................GCTACTCCTCACCATCTGCA.................................................................................................................................................................................................................2011.001.00-1.00-------------------
..............................................................................................................................................................................................CCATCCAAAGATCTGGCC..........................................181.000.00----------------1.00----
.......CTCGCAGCAACTGTGCTACTCCT............................................................................................................................................................................................................................2311.001.00-1.00-------------------
...........................................................................AAAAGGGAGAATGTGCTGGTGG.........................................................................................................................................................2211.001.001.00--------------------
......GCTCGCAGCAACTGTGCTA.................................................................................................................................................................................................................................1911.001.00-1.00-------------------
..............CAACTGTGCTACTCCTCACCATCTGCAG................................................................................................................................................................................................................2811.001.001.00--------------------
....CTGCTCGCAGCAACTGTGATA.................................................................................................................................................................................................................................211.000.00-1.00-------------------
...................................................................................................................................AGGTCTGGCAACCAAAGGGCTCA................................................................................................2311.001.00-1.00-------------------
......GCTCGCAGCAACTGTGCTACTC..............................................................................................................................................................................................................................2211.001.00-1.00-------------------
................................................................................................................................................AAAGGGCTCAAAAGGAAGATCATT..................................................................................2411.001.00-1.00-------------------
.................CTGTGCTACTCCTCACCA.......................................................................................................................................................................................................................1811.001.00-1.00-------------------
............AGCAACTGTGCTACTCCTCATA........................................................................................................................................................................................................................221.000.00-----------------1.00---
..............CAACTGTGCTACTCCTCACCATCTGCAGC...............................................................................................................................................................................................................2911.001.001.00--------------------
................................................................................................................................................................................AAAGCCCAGAAAGCCCATCC......................................................2011.001.00-1.00-------------------
..............................................................................AGGGAGAATGTGCTGGTGG.........................................................................................................................................................1911.001.00-1.00-------------------
..............................................................................................................................TATCCAGGTCTGGCAACCAAAGG.....................................................................................................2311.001.001.00--------------------
...............................................................................................................................................CAAAGGGCTCAAAAGGAAGATCATA..................................................................................251.000.001.00--------------------
..............................CACCATCTGCAGCCTTGAAGGAGC....................................................................................................................................................................................................2411.001.001.00--------------------
..........................TCCTCACCATCTGCAGCCT.............................................................................................................................................................................................................1911.001.00-1.00-------------------
.............GCAACTGTGCTACTCCTCACCATC.....................................................................................................................................................................................................................2411.001.00-1.00-------------------
..............CAACTGTGCTACTCCTCACC........................................................................................................................................................................................................................2011.001.00-----1.00---------------
...............AACTGTGCTACTCCTCACCATCTGCAGCC..............................................................................................................................................................................................................2911.001.001.00--------------------
...............................ACCATCTGCAGCCTTGAAGGAG.....................................................................................................................................................................................................221.000.00--1.00------------------
...............AACTGTGCTACTCCTCACCATC.....................................................................................................................................................................................................................2211.001.00-1.00-------------------
......................................................................................................................................................................TTCCCTCTCTAAAGCCCAGAA...............................................................2111.001.001.00--------------------
...........CAGCAACTGTGCTACTCCTCACCATCT....................................................................................................................................................................................................................2711.001.001.00--------------------
....................................................................................................................................................................................................AAAGATCTGGCTGGATACCT..................................2011.001.00-1.00-------------------
............................................................................AAAGGGAGAATGTGCTGGTGGTTATA....................................................................................................................................................2611.001.00-1.00-------------------
..AGCTGCTCGCAGCAACTGTGCTGCT...............................................................................................................................................................................................................................2511.001.001.00--------------------
.............................TCACCATCTGCAGCCTTGAAGGAGC....................................................................................................................................................................................................251.000.001.00--------------------
.................................................................................................................................................................................................TCCAAAGATCTGGCTGGATATA...................................221.000.001.00--------------------
.................................CATCTGCAGCCTTGAAGTAC.....................................................................................................................................................................................................201.000.001.00--------------------
...GCTGCTCGCAGCAACTGTGCTACTCC.............................................................................................................................................................................................................................2611.001.00--1.00------------------
..AGCTGCTCGCAGCAACTGTGCTACTCCTCA..........................................................................................................................................................................................................................3011.001.001.00--------------------
........................ACTCCTCACCATCTGCAGCCTTGAAG........................................................................................................................................................................................................2611.001.00--1.00------------------
..............................CACCATCTGCAGCCTTGAAGGAGCT...................................................................................................................................................................................................2511.001.00-1.00-------------------
.......................TACTCCTCACCATCTGCAGC...............................................................................................................................................................................................................2011.001.00-1.00-------------------
......................CTACTCCTCACCATCTGCAGCCTTGAAG........................................................................................................................................................................................................2811.001.00--1.00------------------
....CTGCTCGCAGCAACTGTGCTACTCCTCAC.........................................................................................................................................................................................................................2911.001.001.00--------------------
........................................................................GCCAAAAGGGAGAATGTGCT..............................................................................................................................................................2011.001.00------1.00--------------
..................................ATCTGCAGCCTTGAAGGAG.....................................................................................................................................................................................................191.000.00-1.00-------------------
.............GCAACTGTGCTACTCCTCACCAT......................................................................................................................................................................................................................2311.001.001.00--------------------
..............................CACCATCTGCAGCCTTGAAGGAG.....................................................................................................................................................................................................2311.001.001.00--------------------
............AGCAACTGTGCTACTCCTCAC.........................................................................................................................................................................................................................2111.001.00-1.00-------------------
.........................................................................................................................................................................................................................................AGAGCTGGGGTGGGTTGCA191.000.00---------------1.00-----
.................................................................................................................................CCAGGTCTGGCAACCAAAGGGCTCAAA..............................................................................................2711.001.001.00--------------------
.........................................................................................................................................GGCAACCAAAGGGCTCAAAAGGAAGATA.....................................................................................281.000.001.00--------------------
..................TGTGCTACTCCTCACCATCTGCAGCC..............................................................................................................................................................................................................2611.001.001.00--------------------
.AAGCTGCTCGCAGCAACTGTGCTACT...............................................................................................................................................................................................................................2611.001.001.00--------------------
...................................................................................................................................AGGTCTGGCAACCAAAGGG....................................................................................................1921.001.00-0.500.50------------------
...............................................................................GGGAGAATGTGCTGGTGGTTATA....................................................................................................................................................2311.001.00-1.00-------------------
........................ACTCCTCACCATCTGCAGCCTTT...........................................................................................................................................................................................................231.000.00--1.00------------------
.........................................................................................................................TCTTATATCCAGGTCTGGCAA............................................................................................................2111.001.001.00--------------------
............AGCAACTGTGCTACTCCTCACCAT......................................................................................................................................................................................................................2411.001.001.00--------------------
..............CAACTGTGCTACTCCTCACCATCTGCA.................................................................................................................................................................................................................2711.001.001.00--------------------
.............................TCACCATCTGCAGCCTTGAAG........................................................................................................................................................................................................2111.001.001.00--------------------
.............................TCACCATCTGCAGCCTTGAAGGA......................................................................................................................................................................................................231.000.00------1.00--------------
....................TGCTACTCCTCACCATCTGCAGCC..............................................................................................................................................................................................................2411.001.001.00--------------------
................ACTGTGCTACTCCTCACCATCTGCAGCCTT............................................................................................................................................................................................................3011.001.001.00--------------------
....................................................................................................TAGCTACCTATCTGCCTG....................................................................................................................................1811.001.001.00--------------------
.......CTCGCAGCAACTGTGCTACTCCTCA..........................................................................................................................................................................................................................2511.001.00--1.00------------------
..................................................................................................................................CAGGTCTGGCAACCAAAGGG....................................................................................................2011.001.00-1.00-------------------
..............................CACCATCTGCAGCCTTGAAGG.......................................................................................................................................................................................................2111.001.00-----1.00---------------
....................................................................................................................................................................................................AAAGATCTGGCTGGATACCTT.................................2111.001.001.00--------------------
...............................................................................................................................................CAAAGGGCTCAAAAGGAAGATCA....................................................................................2311.001.001.00--------------------
................................................................................................................................TCCAGGTCTGGCAACCAAAG......................................................................................................2011.001.001.00--------------------
........................ACTCCTCACCATCTGCAGCCTTGAAGG.......................................................................................................................................................................................................2711.001.001.00--------------------
...............AACTGTGCTACTCCTCACCATA.....................................................................................................................................................................................................................2211.003.00-1.00-------------------
...................GTGCTACTCCTCACCATCTGCAG................................................................................................................................................................................................................2311.001.001.00--------------------
.............................................................................AAGGGAGAATGTGCTGGTGGTTATAG...................................................................................................................................................2611.001.001.00--------------------
.....TGCTCGCAGCAACTGTGCTACTC..............................................................................................................................................................................................................................2311.001.00--1.00------------------
.............GCAACTGTGCTACTCCTCACCATCTGC..................................................................................................................................................................................................................2711.001.00-1.00-------------------
................................................................................................................................................AAAGGGCTCAAAAGGAAGATA.....................................................................................211.000.001.00--------------------
...................................................................................................................................................................................................CAAAGATCTGGCTGGATACC...................................2011.001.001.00--------------------
.AAGCTGCTCGCAGCAACT.......................................................................................................................................................................................................................................1811.001.001.00--------------------
...................GTGCTACTCCTCACCATCT....................................................................................................................................................................................................................1911.001.00--1.00------------------
..AGCTGCTCGCAGCAACTGTGCT..................................................................................................................................................................................................................................2211.001.001.00--------------------
................................CCATCTGCAGCCTTGAAG........................................................................................................................................................................................................1820.500.50------------------0.50--
..............................................................TGGAGAGGGGGCCAAAAG..........................................................................................................................................................................1820.500.50--------0.50------------

Antisense strand
GAAGCTGCTCGCAGCAACTGTGCTACTCCTCACCATCTGCAGCCTTGAAGGTGGGTGTGATATGGAGAGGGGGCCAAAAGGGAGAATGTGCTGGTGGTTATAGCTACCTATCTGCCTGTGCTCTTATATCCAGGTCTGGCAACCAAAGGGCTCAAAAGGAAGATCATTCCCTCTCTAAAGCCCAGAAAGCCCATCCAAAGATCTGGCTGGATACCTTTTTGGGGAGGGGGCAGAGAGCTGGGGTGGGTAC
.........................................................................((...(((.(((.......((((((....))))))..))).)))..((((((....(((....)))......))))))......))...........................................................................................
........................................................................73............................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................TGGATATAAGAGCACAGGC...................................................................................................................... 1911.001.00--------------1.00------
................................................................CTTTTGGCCCCCTCTC.......................................................................................................................................................................... 1650.200.20-------------------0.20-
.........................................................................................................CACAGGCAGATAGGT.................................................................................................................................. 1560.170.17--------------------0.17