ID: uc001fxk.4
GENE: ARHGAP30(8)
chr1:161022104-161022279-


(1)
AGO1.ip 		(2)
AGO2.ip 		(8)
B-CELL 		(25)
BREAST 		(16)
CELL-LINE 		(6)
CERVIX 		(3)
LIVER 		(2)
OTHER 		(20)
SKIN

Sense strand
CTCTGGCCATGAGACTAAGCGTAAACTTCCACGGGGGGCTGAGGACAGGGGTAAGTCTGGGGAGATGGGGGGAGCTCTGCTGAGGGTGCACAAGGCCCTGGCTCTACACACATCCCTGTCTTACAGAGGATAAATCCAACAAGGGGACACTGCGGCCAGCCAAAAGCATGGACTCA
..................................................(((((...(((((..((...((((((......(((((.......)))))))))))...))..)))))..)))))....................................................
..................................................51.........................................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR343335SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR343334SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786TAX577745(Rovira)
total RNA. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR189782SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191525(GSM715635)
121genomic small RNA (size selected RNA from . (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
........................................................................................................TACACACATCCCTGTCTTACAGT.................................................231129.0061.0069.005.001.001.004.001.001.00---2.001.003.00--1.001.002.001.001.002.001.00-1.00--2.00--1.001.001.00--2.002.00--1.00-1.001.001.001.001.00-1.00--1.00-1.00-1.00-1.00-1.00--------1.001.001.001.00-----1.001.001.001.001.001.00---
........................................................................................................TACACACATCCCTGTCTTACAG..................................................22161.0061.0027.004.007.001.00-1.005.003.00---1.00---1.00-1.00----1.001.002.00--1.00--1.001.00-2.00-----------------------------------------------1.00--
........................................................................................................TACACACATCCCTGTCTTACA...................................................21131.0031.00-5.00-5.001.002.00-1.00-2.001.001.00-2.00----1.00-1.00----------------1.00-1.00-------1.001.00-----1.00---1.00---1.00-------1.00---1.00---------
........................................................................................................TACACACATCCCTGTCTTACAGA.................................................23118.0018.007.003.00--1.001.00-1.00----------1.001.00--1.00------1.00--------------------1.00---------------------------------
........................................................................................................TACACACATCCCTGTCTTAC....................................................20117.0017.007.00--------2.00---1.002.00----------1.00-----------1.00--------------1.00--------1.00-1.00--------------------
........................................................................................................TACACACATCCCTGTCTTA.....................................................1917.007.00---1.00-------1.00--1.00------------1.00----------------------------1.00--------------1.00-1.00----------
.........................................................................................................ACACACATCCCTGTCTTACAGT.................................................225.000.005.00-----------------------------------------------------------------------------------
........................................................................................................TACACACATCCCTGTCTTACAGC.................................................2315.0061.004.00------------------1.00----------------------------------------------------------------
..........................................................................................................CACACATCCCTGTCTTACAGT.................................................212.000.001.00----------------------------------------------------------------1.00------------------
.............................CACGGGGGGCTGAGGACAGGG..............................................................................................................................2112.002.00----------------------------2.00-------------------------------------------------------
.......................................................................................................CTACACACATCCCTGTCTTACAGT.................................................242.000.002.00-----------------------------------------------------------------------------------
...............................CGGGGGGCTGAGGACTCTG..............................................................................................................................191.000.00------------------------------------------------------------------------1.00-----------
.............................................................................................................................................AGGGGACACTGCGGCGGT.................181.000.00-----1.00------------------------------------------------------------------------------
...........................TCCACGGGGGGCTGAGGACAGGGAGGA..........................................................................................................................271.000.00------------------------------------1.00-----------------------------------------------
.........................................................................................................................................AACAAGGGGACACTGCGG.....................1811.001.00----------------------------------------------------------------1.00-------------------
.................................GGGGGCTGAGGACAGGGAGGA..........................................................................................................................211.000.00------------------------------------------------------------1.00-----------------------
..................................................GTAAGTCTGGGGAGATGGGGGGAGC.....................................................................................................2511.001.00--------1.00---------------------------------------------------------------------------
.....GCCATGAGACTAAGCGTAAACTTCCA.................................................................................................................................................2611.001.00----------------1.00-------------------------------------------------------------------
.........................................................................................................ACACACATCCCTGTCTTCCA...................................................201.000.00---------------------1.00--------------------------------------------------------------
.....................................GCTGAGGACAGGGGTAA..........................................................................................................................1711.001.00-------------------------1.00----------------------------------------------------------
...TGGCCATGAGACTAAATTT..........................................................................................................................................................191.000.00----1.00-------------------------------------------------------------------------------
........................................................................................................TACACACATCCCTGTCTTATAGT.................................................2311.007.00-----1.00------------------------------------------------------------------------------
.......................................................TCTGGGGAGATGGGGGGAGCTCTG.................................................................................................2411.001.00-----------------------------------------------------------1.00------------------------
........................................................................................................TACACACATCCCTGTCTACAG...................................................211.000.00--1.00---------------------------------------------------------------------------------
......................................................................................................................................TCCAACAAGGGGACACTGCG......................2011.001.00---------------1.00--------------------------------------------------------------------
........................................................................................................TACACACATCCCTGTCTTATA...................................................2111.007.00--------1.00---------------------------------------------------------------------------
.......................................................................................................................................................GCGGCCAGCCAAAAGCATGGACT..2311.001.00----------------1.00-------------------------------------------------------------------
.................................GGGGGCTGAGGACAGGGAGG...........................................................................................................................201.000.00------------------------------------1.00-----------------------------------------------
.........................................................................................................................................AACAAGGGGACACTGCGGCC...................2011.001.00----------1.00-------------------------------------------------------------------------
...................................................TAAGTCTGGGGAGATG.............................................................................................................1620.500.50----------------------------------------------------------------------------------0.50-
.......................................TGAGGACAGGGGTAAG.........................................................................................................................1650.200.20-----------------------------------------------------------------------------------0.20

Antisense strand
CTCTGGCCATGAGACTAAGCGTAAACTTCCACGGGGGGCTGAGGACAGGGGTAAGTCTGGGGAGATGGGGGGAGCTCTGCTGAGGGTGCACAAGGCCCTGGCTCTACACACATCCCTGTCTTACAGAGGATAAATCCAACAAGGGGACACTGCGGCCAGCCAAAAGCATGGACTCA
..................................................(((((...(((((..((...((((((......(((((.......)))))))))))...))..)))))..)))))....................................................
..................................................51.........................................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR343335SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR343334SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786TAX577745(Rovira)
total RNA. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR189782SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191525(GSM715635)
121genomic small RNA (size selected RNA from . (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
......................................CTGAGGACAGGGGTAAGTCTACGC.................................................................................................................. 242.000.00--------------------------------2.00---------------------------------------------------
.....................................................................................................CTCTACACACATCCCTAA......................................................... 182.000.00--------2.00---------------------------------------------------------------------------
...............................................................................................AGACAGGGATGTGTGTAGAGCCAGGG....................................................... 2611.001.00---------------------------------------------1.00--------------------------------------
..............................................................................................GCCCTGGCTCTACACATG................................................................ 181.000.00--------1.00---------------------------------------------------------------------------