ID: uc001fpf.2_intron_15_0_chr1_156510709_r.3p
GENE: (22)
chr1:156510659-156510908-


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(6)
BREAST
(28)
CELL-LINE
(1)
HEART
(4)
HELA
(2)
LIVER
(3)
OTHER
(1)
RRP40.ip
(8)
SKIN
(1)
XRN.ip

Sense strand
GGAAGCTCAGGGACAGGCCTGGCTAGAAGGCTACCCACTGCCCTCCAAGTGCAAGCAGAACCAGTTAGAAGAGGACTGGGGTTGGGGACCTGCTGATCCCAAGCAGAACGGGGACTGGGGTGGGCTGACTCGGGCAGGGGCTGGTGAGGAGGCCTCTGATGAGGCATGGCTAATCCTGATGCCTCCTCCCTTCCTCCCAGTGCATGCACCCCACCCTCCTCTCAGTGTGGTACGCAGATTTGCCCATCTC
....................................................................................................................................((..((((..((.((((((((.((.(((..(((...))).)))..)).))))))))))..))))))....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029124(GSM416753)
HeLa. (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................................GCCTCTGATGAGGCATGGCTAATCCTGATG.....................................................................30190.0090.0022.0018.0014.00-6.002.007.003.003.001.003.001.002.001.001.00-------1.001.00----1.00------------1.00--1.00-1.00--------
......................................................................................................................................................GGCCTCTGATGAGGCATGGCTAATCCTGATG.....................................................................31123.0023.007.00---3.006.00--1.002.00---------1.00-2.00---------------------------1.00-----
...................................................................................................................................................................................TGCCTCCTCCCTTCCTCCCAG..................................................2117.007.00---5.00-----------2.00---------------------------------------
....................................................................................................................................................................................GCCTCCTCCCTTCCTCCCGC..................................................203.000.00---------------------------1.00--1.00---1.00--------------------
.......................................................................................................................................................GCCTCTGATGAGGCATGGCTAATCCTTATG.....................................................................303.000.001.00----------2.00-------------------------------------------
...................................................................................................................................................................................TGCCTCCTCCCTTCCTCCCAGA.................................................2213.007.00-------1.00---------------------------1.00---------1.00---------
.......................................................................................................................................................GCCTCTGATGAGGCATGG.................................................................................1812.002.002.00------------------------------------------------------
................................................................TTAGAAGAGGACTGGGGTTGGGGACCTGCTG...........................................................................................................................................................3112.002.00------------------2.00------------------------------------
..................................................................................................................................................................................ATGCCTCCTCCCTTCCTCCTAA..................................................222.000.00---2.00---------------------------------------------------
....................................................................................................................................................................................GCCTCCTCCCTTCCTCCCGCC.................................................212.000.00--------------1.00----------------1.00-----------------------
.........................................................................................................................................GGGCTGGTGAGGAGGCCTCTGA...........................................................................................2212.002.00-----------------2.00-------------------------------------
...................................................................................................................................................................................TGCCTCCTCCCTTCCTCCCAGT.................................................2212.002.00---1.00--------------------------------------1.00------------
.......................................................................................................................................................GCCTCTGATGAGGCATGGCTAATCCTG........................................................................2712.002.00----------------1.00--------------------1.00-----------------
......................................................................................................................................CAGGGGCTGGTGAGGAGGCC................................................................................................2022.002.00------------------------1.50---------------------------0.50--
................................................................................................................................................................................TGATGCCTCCTCCCTTCCT.......................................................1911.001.00----------------------1.00--------------------------------
.......................................................................................................................................................GCCTCTGATGAGGCATGGCTAATCCTGATT.....................................................................301.000.00------------1.00------------------------------------------
......................................................................................................................................................GGCCTCTGATGAGGCATGGCTAATCCTG........................................................................2811.001.00----------------1.00--------------------------------------
............................................................................................................CGGGGACTGGGGTGGGT.............................................................................................................................171.000.00-------------------1.00-----------------------------------
.....................................................................................................................................GCAGGGGCTGGTGAGGAGGCCTAGT............................................................................................251.000.00---------------------------------------1.00---------------
...................................................................GAAGAGGACTGGGGTTGGGGA..................................................................................................................................................................2111.001.00-----------------------------1.00-------------------------
..................................................................................................CCAAGCAGAACGGGGACTGGGGTG................................................................................................................................2411.001.00--------------------------------------1.00----------------
................................................................................................................................................................................TGATGCCTCCTCCCTTCCTCCCA...................................................2311.001.00-------------------------1.00-----------------------------
...................................................................................................................................................................................................................................TGGTACGCAGATTTGCCCATCT.2211.001.00-------1.00-----------------------------------------------
...................................................................................................................................................................................TGCCTCCTCCCTTCCTCCCAGG.................................................2211.007.00----1.00--------------------------------------------------
.......................................................................................................................................................GCCTCTGATGAGGCATGGCTAATCCTGACG.....................................................................301.000.00------1.00------------------------------------------------
......................................................................................................................................CAGGGGCTGGTGAGGAGGCCTCA.............................................................................................231.000.00--------------------1.00----------------------------------
......................................................................................................................................................GGCCTCTGATGAGGCATGGCTAATC...........................................................................2511.001.00--------------------------------1.00----------------------
......................................................................................................................................................GGCCTCTGATGAGGCATGGCTAATCCTGA.......................................................................2911.001.00--------------------------1.00----------------------------
.......................................................................................................................................................GCCTCTGATGAGGCATGGCTAATCCTTATT.....................................................................301.000.00-----------------------1.00-------------------------------
.................................................................................................................................................................................GATGCCTCCTCCCTTCCTCCCA...................................................2211.001.00-------------------------------------------1.00-----------
...................................................................................................................................................................................TGCCTCCTCCCTTCCTCCCAGCT................................................2311.007.00---------------------------------1.00---------------------
................................................................................................................................................................................TGATGCCTCCTCCCTTCCTCCGAG..................................................241.000.00---1.00---------------------------------------------------
.................................................................................................................................................................................................CTCCCAGTGCATGCACCA.......................................181.000.00------------------------------------------------1.00------
................................................................................................................................................................................TGATGCCTCCTCCCTTCCTCCCAGAT................................................261.000.00---1.00---------------------------------------------------
..................................................................................................................................................................................ATGCCTCCTCCCTTCCTCCCAG..................................................2211.001.00---1.00---------------------------------------------------
..................................................................AGAAGAGGACTGGGGTTGT.....................................................................................................................................................................191.000.00-----------------------------------------------1.00-------
.....................................................................................................................................GCAGGGGCTGGTGAGGAGGCCTCA.............................................................................................241.000.00---1.00---------------------------------------------------
...............................................................GTTAGAAGAGGACTGGGGTTGG.....................................................................................................................................................................2211.001.00--------------------------------------------------1.00----
.............................................................................................................................................TGGTGAGGAGGCCTCTGATGAGT......................................................................................231.000.00-------------1.00-----------------------------------------
...................................................................................................................................................................................TGCCTCCTCCCTTCCTCCCAGAAA...............................................2411.007.00------------------------------------1.00------------------
........................................................AGAACCAGTTAGAAGTAGC...............................................................................................................................................................................191.000.00----------------------------------------1.00--------------
.....................................................................................................................................GCAGGGGCTGGTGAGGAGGAT................................................................................................211.000.00--------------------1.00----------------------------------
......................................................................................................................................CAGGGGCTGGTGAGGAGGC.................................................................................................1920.500.50---------------------------------------------------0.50---
..............................................AAGTGCAAGCAGAACCAG..........................................................................................................................................................................................1820.500.50------------------------------------------------------0.50
.......................................................................................................................................AGGGGCTGGTGAGGAGGC.................................................................................................1830.330.33-------------0.33-----------------------------------------
.............................................................................................................GGGGACTGGGGTGGGCT............................................................................................................................1760.170.17---------0.17---------------------------------------------

Antisense strand
GGAAGCTCAGGGACAGGCCTGGCTAGAAGGCTACCCACTGCCCTCCAAGTGCAAGCAGAACCAGTTAGAAGAGGACTGGGGTTGGGGACCTGCTGATCCCAAGCAGAACGGGGACTGGGGTGGGCTGACTCGGGCAGGGGCTGGTGAGGAGGCCTCTGATGAGGCATGGCTAATCCTGATGCCTCCTCCCTTCCTCCCAGTGCATGCACCCCACCCTCCTCTCAGTGTGGTACGCAGATTTGCCCATCTC
....................................................................................................................................((..((((..((.((((((((.((.(((..(((...))).)))..)).))))))))))..))))))....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029124(GSM416753)
HeLa. (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................................................................ACTGGGAGGAAGGGAGGA................................................. 1820.500.50-----------------------------------------------------0.50-