ID: uc001fol.1_intron_4_0_chr1_156287039_r
GENE: (9)
chr1:156286989-156287255-


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(8)
HELA 		(8)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CATTATCCAACTGAAGCCCGATGTGGTCATCACTGAAAAGGGCATCTCAGGTGGGACTTTGTTACTTTTTCCAGCCTACCTTTGAGGTAGACGAGGGTGGGTGATTTGTTTTCTCCCCTCATGTTTGGCAGGGGCGTAATAGTGTCATGGTTAAGAGTACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAGATTTAGCTCAGCACTACCTTATGCGGGCCAATATCACAGCCATCCGCAGA
...................................................((((.((...((((....((((..(((((.....)))))..(((((.(((.((.....)).)))))))).((((.(((.(((........((...(((((((((.....)))))))))...))..........))).))).))))..........))))...))))....))))))........................................
..................................................51..............................................................................................................................................................................227......................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR029128(GSM416757)
H520. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
...................................................................................................................................................TGGTTAAGAGTACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAG..................................................70111.0011.008.00---------1.00-----2.00----------------------------------------
....................................................................................................................................................GGTTAAGAGTACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAG..................................................6919.009.009.00--------------------------------------------------------
......................................................................................................................................................TTAAGAGTACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAG..................................................6718.008.00-8.00-------------------------------------------------------
..................................................GTGGGACTTTGTTACTTTTTCCAGCCTACCTTTGAGGTAGACGAGGGTGGGTGATT.................................................................................................................................................................5615.005.00-5.00-------------------------------------------------------
..................................................GTGGGACTTTGTTACTTTTTCCAGCCTACCTTTGAGGTAGACGAGGGTGGGTGATTTGTTTTCTCCCCTCATGTTTGGCAGGGGCGTA.................................................................................................................................8815.005.005.00--------------------------------------------------------
............................................................................................................................................................................................GCTTGACATCTCTACTCTTGGATTTGTAG..................................................2914.004.00--4.00------------------------------------------------------
...................................AAAAGGGCATCTCAGATTT.....................................................................................................................................................................................................................193.000.00-------------1.00-----------------------1.00--------------1.00----
.............................................................................................................................................................................................................TTGGATTTGTAGATTCTG............................................182.000.00----1.00------------------------1.00---------------------------
..................................................GTGGGACTTTGTTACTTTTTCCAGC................................................................................................................................................................................................2512.002.00---------------2.00-----------------------------------------
.............AAGCCCGATGTGGTCATCACTGAAAAGG..................................................................................................................................................................................................................................2812.002.00--------1.00---------------------------------1.00--------------
.....................TGTGGTCATCACTGAAAAGGGCATA.............................................................................................................................................................................................................................252.000.00------1.00------------1.00-------------------------------------
.....................................................................................................................................................................................................CTCTACTCTTGGATTTGTAG..................................................2012.002.00-------------------------------------------1.00-----1.00-------
..............................CACTGAAAAGGGCATCTCAGATTT.....................................................................................................................................................................................................................242.000.00---1.00------------------------------------------1.00----------
......................................................................................................................................................................................................TCTACTCTTGGATTTGTAG..................................................1912.002.00------------1.00------------------1.00-------------------------
......................................................................................................................................................................................................................................................AATATCACAGCCATCCGC...1812.002.00------------------2.00--------------------------------------
........AACTGAAGCCCGATGTGGTC...............................................................................................................................................................................................................................................2012.002.00-----------2.00---------------------------------------------
....................................................................................................................................................................................................TCTCTACTCTTGGATTTGTAG..................................................2112.002.00-----------------2.00---------------------------------------
.....................TGTGGTCATCACTGAAAAGGGCATCTC...........................................................................................................................................................................................................................2712.002.00------1.00--1.00-----------------------------------------------
......................................................................................................................................................................................................................................CTACCTTATGCGGGCCAATATCACA............2512.002.00--------2.00------------------------------------------------
.............................................................................................................................................................TACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAG..................................................6012.002.00--------------------2.00------------------------------------
......................GTGGTCATCACTGAAAAGGGCATC.............................................................................................................................................................................................................................2411.001.00---1.00-----------------------------------------------------
................................CTGAAAAGGGCATCTCAGA........................................................................................................................................................................................................................191.000.00-----1.00---------------------------------------------------
..................CGATGTGGTCATCACTGAAAAGGGCATC.............................................................................................................................................................................................................................2811.001.00--------------------------------------------------1.00------
.........................................................................................................................................................................................................................................CCTTATGCGGGCCAATATCA..............2011.001.00---------------------------------------1.00-----------------
.....................TGTGGTCATCACTGAAAAGGGCATCTCAGACT......................................................................................................................................................................................................................321.000.00---------1.00-----------------------------------------------
..............................CACTGAAAAGGGCATCTCAGA........................................................................................................................................................................................................................211.000.00-------------1.00-------------------------------------------
...........................................................................................................................TTTGGCAGGGGCGTAATAGTGTCACGG.....................................................................................................................271.000.00--------------1.00------------------------------------------
........AACTGAAGCCCGATGTGGTCA..............................................................................................................................................................................................................................................2111.001.00-----------------------------------------1.00---------------
...........................................................................................................................................................................................................................................TTATGCGGGCCAATATCACAGCC.........2311.001.00-------1.00-------------------------------------------------
.................................TGAAAAGGGCATCTCAGA........................................................................................................................................................................................................................181.000.00-----1.00---------------------------------------------------
.......................................................................................................................................................TAAGAGTACTTTGATTATAAAAC.............................................................................................2311.001.00-----------------------1.00---------------------------------
..........................TCATCACTGAAAAGGGCATCTCAGATT......................................................................................................................................................................................................................271.000.00---1.00-----------------------------------------------------
.......................TGGTCATCACTGAAAAGGGCATCTC...........................................................................................................................................................................................................................2511.001.00-----------------------------------------------1.00---------
.......................TGGTCATCACTGAAAAGGGCATCT............................................................................................................................................................................................................................2411.001.00------------------------------------1.00--------------------
.....................TGTGGTCATCACTGAAAAGGGCA...............................................................................................................................................................................................................................2311.001.00-----1.00---------------------------------------------------
.......................TGGTCATCACTGAAAAGGGCATA.............................................................................................................................................................................................................................231.000.00-------------------1.00-------------------------------------
............................ATCACTGAAAAGGGCATCTCAGATTT.....................................................................................................................................................................................................................261.000.00----------------------------1.00----------------------------
.............................................................................................................................................................................................................................................ATGCGGGCCAATATCACAG...........1911.001.00---------------------------------------------1.00-----------
.....................TGTGGTCATCACTGAAAAGGGAATA.............................................................................................................................................................................................................................251.000.00---1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................GCGGGCCAATATCACAGCC.........1911.001.00-------1.00-------------------------------------------------
.....................TGTGGTCATCACTGAAAAGGGCATCTCA..........................................................................................................................................................................................................................2811.001.00------1.00--------------------------------------------------
.....................TGTGGTCATCACTGAAAAGGGC................................................................................................................................................................................................................................2211.001.00---------------------------1.00-----------------------------
...........................................................................................................................................................................................................TCTTGGATTTGTAGATTTTTG...........................................211.000.00------------------------------1.00--------------------------
........................................................................................................................................................................................................................GATTTAGCTCAGCACTACC................................1911.001.00---------------------1.00-----------------------------------
...................................................................................................................................................................GATTATAAAACCAGTTCAGAACCCAG..............................................................................2611.001.00--------------------------------------1.00------------------
.......CAACTGAAGCCCGAT.....................................................................................................................................................................................................................................................1511.001.00----1.00----------------------------------------------------
.ATTATCCAACTGAAGCCCGAT.....................................................................................................................................................................................................................................................2111.001.00----1.00----------------------------------------------------
...........................................................................................................................................................................................................................................TTATGCGGGCCAATATCA..............1811.001.00---------------------------------------------------1.00-----
..................................................................................................................................................ATGGTTAAGAGTACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAG..................................................7111.001.00----------1.00----------------------------------------------
.......CAACTGAAGCCCGATGT...................................................................................................................................................................................................................................................1711.001.00----------------------------------1.00----------------------
...................................................................................................................................................................................................ATCTCTACTCTTGGATTTGTAG..................................................2211.001.00------------------------1.00--------------------------------
...........................................................................................................................................................................................................................................TTATGCGGGCCAATATCACAGC..........2211.001.00-------1.00-------------------------------------------------
.....................TGTGGTCATCACTGAAAAGGGCATC.............................................................................................................................................................................................................................2511.001.00--------------------------------------------1.00------------
..................................................................................................................................................................................................CATCTCTACTCTTGGATTTGTAG..................................................2311.001.00------------1.00--------------------------------------------
.................CCGATGTGGTCATCACTGAAAAA...................................................................................................................................................................................................................................231.000.00----------------------------------------1.00----------------
............................ATCACTGAAAAGGGCATT.............................................................................................................................................................................................................................181.000.00-----------------------------------1.00---------------------
................CCCGATGTGGTCATCACTGAAA.....................................................................................................................................................................................................................................2211.001.00--------------------------------1.00------------------------
................................................................................TTTGAGGTAGACGAGGGTG........................................................................................................................................................................1911.001.00--------------------------1.00------------------------------
...............................ACTGAAAAGGGCATCTCAGATCT.....................................................................................................................................................................................................................231.000.00---------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................ATATCACAGCCATCCGCAGACCGG241.000.00--------------1.00------------------------------------------
........................................................................................................................................................................................................................GATTTAGCTCAGCACTACCTTATGCG.........................2611.001.00----------------------1.00----------------------------------
........AACTGAAGCCCGATG....................................................................................................................................................................................................................................................1520.500.50---------------------0.50-----------------------------------
........................................................................................................................................TAATAGTGTCATGGTTA..................................................................................................................1720.500.50-----------------------------------------------------0.50---
.........................GTCATCACTGAAAAGG..................................................................................................................................................................................................................................1620.500.50------------------------------------------------------0.50--
....................................................................................................................................................................................................................................................CCAATATCACAGCCATC......1730.330.33-------------------------------------------------------0.33-
.........................................................................................................................................................................................................ACTCTTGGATTTGTAG..................................................1650.200.20--------------------------------------------------------0.20

Antisense strand
CATTATCCAACTGAAGCCCGATGTGGTCATCACTGAAAAGGGCATCTCAGGTGGGACTTTGTTACTTTTTCCAGCCTACCTTTGAGGTAGACGAGGGTGGGTGATTTGTTTTCTCCCCTCATGTTTGGCAGGGGCGTAATAGTGTCATGGTTAAGAGTACTTTGATTATAAAACCAGTTCAGAACCCAGCTTGACATCTCTACTCTTGGATTTGTAGATTTAGCTCAGCACTACCTTATGCGGGCCAATATCACAGCCATCCGCAGA
...................................................((((.((...((((....((((..(((((.....)))))..(((((.(((.((.....)).)))))))).((((.(((.(((........((...(((((((((.....)))))))))...))..........))).))).))))..........))))...))))....))))))........................................
..................................................51..............................................................................................................................................................................227......................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR029128(GSM416757)
H520. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.........................................................................................GACGAGGGTGGGTGAGCCA............................................................................................................................................................... 192.000.00--2.00------------------------------------------------------
.....................................AAGGGCATCTCAGGTATC.................................................................................................................................................................................................................... 181.000.00---------------------------------1.00-----------------------