ID: uc001fkt.2_intron_3_0_chr1_155311894_r.5p
GENE: (24)
chr1:155312905-155313154-


(2)
B-CELL
(3)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(2)
FIBROBLAST
(1)
HEART
(2)
LIVER
(2)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
GGCTGTAGTGGGGACCTGCTGTGTGTTGGACCTTTATACGTATTGTAAAGGTAAGTGATCTGGGCTAGTTAAAAAATGACCTCGGCCAAGTGCAGTGGCTCACGCTGATAATCCCAGCGGTGTGGGAGGCCGAGGCAGGCAGATTGCTTAAGCCCAGGAGTGTGAGACCAGCCTGGCCAACGTGGCAAAACTCTGCCTCTGTAGCTGGGCATGGCAGTGTAGGCCTGTAGTCCCAACTACTGGGAGGATT
..........................................................(((((((((((.......((.((((((((.....(((((.....)))))....(((((......)))))))))))))))........)))..))))))))............(((((.....)).)))................................................................
..................................................51........................................................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189786SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCG.................................................................2138.000.0032.005.00-------1.00-------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCA.................................................................2130.000.0025.004.00-------1.00-------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGCG.................................................................2316.000.0011.005.00---------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGC..................................................................2010.000.0010.00----------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCGA................................................................228.000.008.00----------------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGC..................................................................227.000.007.00----------------------------------
...................................................................................................................................................................GAGACCAGCCTGGCCAACGGCG.................................................................224.000.003.001.00---------------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGCA.................................................................234.000.001.003.00---------------------------------
......................................................................................................................................................................ACCAGCCTGGCCAACGGCG.................................................................192.000.002.00----------------------------------
..................................................GTAAGTGATCTGGGCTAAGA....................................................................................................................................................................................202.000.00----2.00------------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGCC.................................................................232.000.00-2.00---------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCAA................................................................222.000.002.00----------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGACA................................................................221.000.00-1.00---------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGTGGCAACCGC..........................................................281.000.001.00----------------------------------
..................................................................................................................................................................................................GCCTCTGTAGCTGGGCATGGCAGTGTAGG...........................2911.001.00------------1.00----------------------
..................................................................................................................................................................................................GCCTCTGTAGCTGGGCATGGC...................................2111.001.00-------------------------------1.00---
.......................TGTTGGACCTTTATACGTATTGTAAAG........................................................................................................................................................................................................2711.001.00-----1.00-----------------------------
.................................TTATACGTATTGTAAAG........................................................................................................................................................................................................1711.001.00------1.00----------------------------
....................GTGTGTTGGACCTTTAT.....................................................................................................................................................................................................................1711.001.00----------------1.00------------------
.......................................................TGATCTGGGCTAGTTAAAAAATGA...........................................................................................................................................................................2411.001.00----------1.00------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGCGA................................................................241.000.001.00----------------------------------
......................................................................................................................................................................................................CTGTAGCTGGGCATGGCAGTGTAGGC..........................2611.001.00---1.00-------------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGACA.................................................................231.000.00-1.00---------------------------------
...................................ATACGTATTGTAAAGG.......................................................................................................................................................................................................1611.001.00--------------------------1.00--------
.......................................GTATTGTAAAGGTAAGTG.................................................................................................................................................................................................1811.001.00---1.00-------------------------------
..................................................GTAAGTGATCTGGGCTAGTTAAAAAA..............................................................................................................................................................................2611.001.00--------------------------------1.00--
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCC.................................................................211.000.001.00----------------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGAGA................................................................241.000.00-1.00---------------------------------
.............................................................................................................................................................................................................................GGCCTGTAGTCCCAAAAAA..........191.000.00---------------------1.00-------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGCAA................................................................241.000.00-1.00---------------------------------
....................................................................................................................................................................................................CTCTGTAGCTGGGCATGG....................................1811.001.00----------1.00------------------------
..................................................................................................................................................................................................GCCTCTGTAGCTGGGCATGGCAGT................................2411.001.00--------1.00--------------------------
........................................................................................................................................................................................................................GTGTAGGCCTGTAGTAC.................171.000.00---1.00-------------------------------
................TGCTGTGTGTTGGACCTTTA......................................................................................................................................................................................................................2011.001.00------------------------1.00----------
..................................................................................................................................................................................................GCCTCTGTAGCTGGGCATGGCAGTG...............................2511.001.00-----------1.00-----------------------
..................................................................................................................................................................................................GCCTCTGTAGCTGGGCATGGCCGT................................2411.001.00--------1.00--------------------------
........................GTTGGACCTTTATACGTATTGTA...........................................................................................................................................................................................................2311.001.00---1.00-------------------------------
...................TGTGTGTTGGACCTTTAT.....................................................................................................................................................................................................................1811.001.00---------------------------1.00-------
....................................................................................................................................................................AGACCAGCCTGGCCAACGTGGCAAAACTCTGCT.....................................................331.000.00-1.00---------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCT.................................................................211.000.00-1.00---------------------------------
.........................................................................AAATGACCTCGGCCAAGTGCAG...........................................................................................................................................................2211.001.00-------------------1.00---------------
...........................................................................................................................GGGAGGCCGAGGCAGGCAGAATC........................................................................................................231.000.00-----------1.00-----------------------
..........................................................................AATGACCTCGGCCAAGTGCAGCGGC.......................................................................................................................................................251.000.001.00----------------------------------
..........................................................................................................................TGGGAGGCCGAGGCAGGCAGATTGGTC.....................................................................................................271.000.00-1.00---------------------------------
..............................................................................................................................................................AGTGTGAGACCAGCCTGGCCAACGG...................................................................251.000.001.00----------------------------------
....................................................................................................................................................................AGACCAGCCTGGCCAACGGCGG................................................................221.000.001.00----------------------------------
......................................................................................................................................................AGCCCAGGAGTGTGAGACCAGCCGAGC.........................................................................271.000.001.00----------------------------------
..................................................................................................................................CGAGGCAGGCAGATTGCTA.....................................................................................................191.000.00---------------------------------1.00-
..........................................TTGTAAAGGTAAGTGATCTGGGCTAG......................................................................................................................................................................................2611.001.00-------------1.00---------------------
....GTAGTGGGGACCTGCTG.....................................................................................................................................................................................................................................1711.001.00------------------------------1.00----
....................................................................................................................................................................AGACCAGCCTGGCCAACGGTGC................................................................221.000.001.00----------------------------------
................TGCTGTGTGTTGGACCTT........................................................................................................................................................................................................................1811.001.00----------------------------1.00------
..................................................GTAAGTGATCTGGGCTAGAG....................................................................................................................................................................................201.000.00----1.00------------------------------
..................................................................................................................................................................TGAGACCAGCCTGGCCAACGGGA.................................................................231.000.001.00----------------------------------
..........................................................................................................................TGGGAGGCCGAGGCAGGCACCAC.........................................................................................................231.000.001.00----------------------------------
.............ACCTGCTGTGTGTTGGAC...........................................................................................................................................................................................................................1830.330.33----------------------------------0.33
..................................................GTAAGTGATCTGGGC.........................................................................................................................................................................................1540.250.25-----0.25-----------------------------

Antisense strand
GGCTGTAGTGGGGACCTGCTGTGTGTTGGACCTTTATACGTATTGTAAAGGTAAGTGATCTGGGCTAGTTAAAAAATGACCTCGGCCAAGTGCAGTGGCTCACGCTGATAATCCCAGCGGTGTGGGAGGCCGAGGCAGGCAGATTGCTTAAGCCCAGGAGTGTGAGACCAGCCTGGCCAACGTGGCAAAACTCTGCCTCTGTAGCTGGGCATGGCAGTGTAGGCCTGTAGTCCCAACTACTGGGAGGATT
..........................................................(((((((((((.......((.((((((((.....(((((.....)))))....(((((......)))))))))))))))........)))..))))))))............(((((.....)).)))................................................................
..................................................51........................................................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189786SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
.....................................................................................................................................................................GACCAGCCTGGCCAACGTAATC............................................................... 227.000.00--7.00--------------------------------
........................................................................................................................................................................CAGCCTGGCCAACGTGGCCAC............................................................. 212.000.00-2.00---------------------------------
.......................................................................................................................................................ACGTTGGCCAGGCTGGTCTCACACTCCTGGGC................................................................... 3212.002.002.00----------------------------------
..........................................................................................................................................................................GCCTGGCCAACGTGGCAAAACTCGG....................................................... 252.000.002.00----------------------------------
.............................................................................................................................................................................................................................GGCCTGTAGTCCCAACTACTGGCA..... 242.000.00-2.00---------------------------------
.................................................................................................................................................................GTGAGACCAGCCTGGCCAACGAC.................................................................. 232.000.002.00----------------------------------
...................................................................................................................................................................................................................................TAGTCCCAACTACTGGGTG.... 191.000.00---------------1.00-------------------
............................................................................................................................................................GGAGTGTGAGACCAGCCTGGCCAAGAGC.................................................................. 281.000.001.00----------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAAACCC......................................................... 261.000.00-1.00---------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAGCC............................................................ 231.000.00-1.00---------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAACT........................................................... 241.000.00-1.00---------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAAGCTT......................................................... 261.000.00-1.00---------------------------------
........................................................................................................................................................................CAGCCTGGCCAACGTGGCAAAACTC......................................................... 251.000.00-1.00---------------------------------
..........................................................................................................................................................................GCCTGGCCAACGTGGCAAAAGGG......................................................... 231.000.001.00----------------------------------
......................................................................................................................................................................ACCAGCCTGGCCAACGTGGCAAGGC........................................................... 251.000.00-1.00---------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAAAAGTC........................................................ 271.000.00-1.00---------------------------------
.....................................................................................................................................................................GACCAGCCTGGCCAACGTGGCAACCC........................................................... 261.000.001.00----------------------------------
..................................................................................................................................................................................................................................GTAGTCCCAACTACTTGGG..... 191.000.00---1.00-------------------------------
.............................................................................................................................................................................................................................GGCCTGTAGTCCCAACTACTCGCG..... 241.000.00------------------1.00----------------
..............................................................................................................................................................................................................................TAGTTGGGACTACAGGC........... 1701.001.00--------------------1.00--------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAAGT........................................................... 241.000.001.00----------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAAGG........................................................... 241.000.00-1.00---------------------------------
..............................................................GGCTAGTTAAAAAATTCT.......................................................................................................................................................................... 181.000.001.00----------------------------------
..........................................................................................................................................................................................AAAACTCTGCCTCTGATGA............................................. 191.000.00-------1.00---------------------------
...........................................................................................................................GGGAGGCCGAGGCAGGCAGACAT........................................................................................................ 231.000.00-----------------------------1.00-----
...............................................................................................................................................................................................................................CCTGTAGTCCCAACTGAGA........ 191.000.00--------------1.00--------------------
............................................................................................................................................................GGAGTGTGAGACCAGCCTGGCCAGACC................................................................... 271.000.001.00----------------------------------
...................................................................................................................................................................GAGACCAGCCTGGCCAACGTGGTGG.............................................................. 251.000.00-----1.00-----------------------------
.........................................................................................................................GTGGGAGGCCGAGGCAGTTAT............................................................................................................ 211.000.00-------------------------1.00---------
..........................................................................................................................................................................GCCTGGCCAACGTGGCAAAACTCTGCCTCGG................................................. 311.000.001.00----------------------------------
......................................................................................................................................................................ACCAGCCTGGCCAACGTGGCAAATTTA......................................................... 271.000.00-1.00---------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGCTA............................................................... 201.000.00-1.00---------------------------------
..........................................................................................................................................................................................................................GTAGGCCTGTAGTCCGAT.............. 181.000.00----------------------1.00------------
...............................................................................................................................................................GTGTGAGACCAGCCTGGGG........................................................................ 191.000.00-------1.00---------------------------
............................................................................................................................................................GGAGTGTGAGACCAGCCTGGCCAACGAG.................................................................. 281.000.001.00----------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAGCCC.......................................................... 251.000.001.00----------------------------------
................................................................................................................TGCCTCGGCCTCCCACACCGCTGGG................................................................................................................. 2511.001.001.00----------------------------------
.....................................................................................................................................................................GACCAGCCTGGCCAACGTGGCAGGA............................................................ 251.000.00-1.00---------------------------------
............................................................................................................TAATCCCAGCGGTGTGACT........................................................................................................................... 191.000.00-----------------1.00-----------------
.........................................................................................................................GTGGGAGGCCGAGGCAGGTTA............................................................................................................ 211.000.00-----------------------1.00-----------
....................................................................................................................................................................AGACCAGCCTGGCCAACGTGGCAAAACTCTTC...................................................... 321.000.00-1.00---------------------------------
..............................................................................................................................................................................................................................GTAGTTGGGACTACAGGC.......... 1801.001.00------1.00----------------------------
........................................................................................................................................................................CAGCCTGGCCAACGTGGCAAAATTCG........................................................ 261.000.00----1.00------------------------------
........................................................................................................................................................................CAGCCTGGCCAACGTGGCATCTC........................................................... 231.000.001.00----------------------------------
.....................................................................................................................................................................GACCAGCCTGGCCAACGTGGCAGTA............................................................ 251.000.00-1.00---------------------------------
.......................................................................................................................................................................CCAGCCTGGCCAACGTGGCAAAAGT.......................................................... 251.000.00-1.00---------------------------------
..........................................................................................................................................................................GCCTGGCCAACGTGGCAAACCC.......................................................... 221.000.001.00----------------------------------
............................................................................................................................................................CCACGTTGGCCAGGCTGGTCTCACACTCC................................................................. 2980.120.12------------0.12----------------------