ID: uc001fjs.2_intron_7_0_chr1_155231526_r
GENE: (1)
chr1:155231476-155231926-


(4)
B-CELL 		(1)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
HELA 		(2)
LIVER 		(1)
OTHER 		(19)
SKIN 		(1)
XRN.ip

Sense strand
ACGGCGGAAACCCGTTCGCCGAGCCCAGCGAGCTTGACAACCCCTTTCAGGTGACTTGCGCCAGTCGGCCTCTTTTGGGCGGTCAGGTTGATTCTTCCCGGTTCTGTAGGGTCGGGCTAACTTGTATCCCCATTTGTGACATTTGATCCTGGGAAGAGCCGCCACGTGGGGTGACAGTGACTCCAGACCAGTGAGCACTCTGGGGGGCGGGCCCTGCCCCTTAATGGGCTGGTGCTGGCAGTGTTGGATGATGGATTTGAGGTAAATGTTGTCCCAGTCCTGGGACAACGGCGTGGCCCCGAAGGTGCAGTACTTGGAGCCACAGGCAGTTTGGGAATGGTCCCTGGGAATTCCCCTAGGTGGCACTGGGTGCCAGCTGAGACCCGGGTCTCTGCCCTCAGGACCCAGCTGTGATCCAGCACCGACCCAGCCGGCAGTATGCCACGCTTGA
...................................................................................................................................................((((((..(((.((((...((((((.((....(((((((((((((...((...((((((((((...)))))))))).)).)))))).)))).)))........................((((((((((....))))))))))..)).))))))..)))).....)))....)).)))).............................................................................................................................
........................................................................................................................................137...............................................................................................................................................................................................331......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR343337SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................................................................................................................................................................................................AGTACTTGGAGCCACAGGC............................................................................................................................1915.005.005.00------------------------------------------------------
.......AAACCCGTTCGCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................163.000.00-----1.002.00------------------------------------------------
.............................................................................................................................................TTTGATCCTGGGAAGAGC....................................................................................................................................................................................................................................................................................................1822.502.502.50------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGGACCCAGCTGTGATCCAGC...............................2212.002.00---1.00-------------------------------------------1.00-------
...........................................................................................................................................................................................................................................................TGGATTTGAGGTAAATGTTGT...................................................................................................................................................................................2112.002.00---2.00---------------------------------------------------
...............................................................................................................................................................................................................................................AGTGTTGGATGATGGATTTGA...............................................................................................................................................................................................2112.002.00-------------2.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................GTGCAGTACTTGGAGCCA.................................................................................................................................1812.002.00------------------2.00------------------------------------
....CGGAAACCCGTTCGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00---------------------------------1.00--1.00------------------
..................................................GTGACTTGCGCCAGTCGGCC.............................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-----------2.00-------------------------------------------
..............................................................................................................................................................................................................................AATGGGCTGGTGCTGGCAGTGT...............................................................................................................................................................................................................2212.002.00--2.00----------------------------------------------------
..........................................................................................................................................................................................................................................................ATGGATTTGAGGTAAATG.......................................................................................................................................................................................1811.001.00---------------1.00---------------------------------------
......................................................................................................................................................................................................................................................GATGATGGATTTGAGGTAAATGT......................................................................................................................................................................................2311.001.00--------------------1.00----------------------------------
...................................................................................................GGTTCTGTAGGGTCGGGGGT............................................................................................................................................................................................................................................................................................................................................201.000.00------------------------1.00------------------------------
.........................................................................................................................................................................................................................................................GATGGATTTGAGGTAAATA.......................................................................................................................................................................................191.000.00-----------------1.00-------------------------------------
..........................................................................................................................................................................GTGACAGTGACTCCAGACC......................................................................................................................................................................................................................................................................1911.001.00------------------------------1.00------------------------
.................................................................................................................................................................................................................................................................................CCAGTCCTGGGACAACGGC...............................................................................................................................................................1911.001.00--1.00----------------------------------------------------
...................................................................................................................................................................................................................................................................................AGTCCTGGGACAACGGC...............................................................................................................................................................1711.001.00-1.00-----------------------------------------------------
.....GGAAACCCGTTCGCCGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------1.00------------------------------------------
................................................................................................CCCGGTTCTGTAGGGTCGGGCTAAC..........................................................................................................................................................................................................................................................................................................................................2511.001.00--1.00----------------------------------------------------
..........................................................................................................................................................................................................................................................ATGGATTTGAGGTAAATGTTG....................................................................................................................................................................................2111.001.00--------------------------1.00----------------------------
..........................AGCGAGCTTGACAACCC........................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-------------------------------1.00-----------------------
...........................................................................................TTCTTCCCGGTTCTGTAGGGTCGG................................................................................................................................................................................................................................................................................................................................................2411.001.00----------1.00--------------------------------------------
..................................................................................................................................CATTTGTGACATTTGATCCTGGGAAGAGCCGC.................................................................................................................................................................................................................................................................................................3211.001.00--------1.00----------------------------------------------
...............................................................................................................................................TGATCCTGGGAAGAGCCGC.................................................................................................................................................................................................................................................................................................1911.001.001.00------------------------------------------------------
........................................................................................TGATTCTTCCCGGTTCTGTAG......................................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------------
...........................................................................................................................................CATTTGATCCTGGGAAGAG.....................................................................................................................................................................................................................................................................................................1911.001.00---1.00---------------------------------------------------
........................................................................................................................................TGACATTTGATCCTGGGAAGAGC....................................................................................................................................................................................................................................................................................................2311.001.00----1.00--------------------------------------------------
.............................................................................................................................................TTTGATCCTGGGAAGAGCCC..................................................................................................................................................................................................................................................................................................201.000.00-----------------------------1.00-------------------------
...................................................................................................................................................................................................................................................TTGGATGATGGATTTGGCCA............................................................................................................................................................................................201.000.00----------------------------------------1.00--------------
........................................................................................................................................................................................AGACCAGTGAGCACTCT..........................................................................................................................................................................................................................................................1711.001.00----------1.00--------------------------------------------
.......................................................................................................CTGTAGGGTCGGGCT.............................................................................................................................................................................................................................................................................................................................................1511.001.00-------------------------------------------------1.00-----
...........................................................................................TTCTTCCCGGTTCTGTAGGGTCGGG...............................................................................................................................................................................................................................................................................................................................................2511.001.00-1.00-----------------------------------------------------
.....................................................................CTCTTTTGGGCGGTCAGGT...........................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------1.00---------------------------
...................................................................................................................................................................................................................................................................................AGTCCTGGGACAACGGCGTG............................................................................................................................................................2011.001.00---------------1.00---------------------------------------
..........................................................................................................................................................................................................................................CTGGCAGTGTTGGATG.........................................................................................................................................................................................................1621.001.00-------1.00-----------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGACCCAGCCGGCAG..............1911.001.00------------1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................................AGCCACAGGCAGTTTGGGAC..................................................................................................................201.000.00-------------------------------------1.00-----------------
..........................AGCGAGCTTGACAACCCCTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------------------------------1.00----
...................................................................................................................................................................................................................................................................................................................CAGTACTTGGAGCCACAGGCAG..........................................................................................................................2211.001.00-1.00-----------------------------------------------------
..............................................................................................................................................................................................................................AATGGGCTGGTGCTGGCAGTGTCGG............................................................................................................................................................................................................2511.002.00---------------------------------------1.00---------------
..........................................................................................................................................................................GTGACAGTGACTCCAGACCAGTGAGCA..............................................................................................................................................................................................................................................................2711.001.00---------------------------------------------1.00---------
..............TTCGCCGAGCCCAGCGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------1.00-------------------------------
.............................................................................................CTTCCCGGTTCTGTAGGGTCGGG...............................................................................................................................................................................................................................................................................................................................................2311.001.00---1.00---------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................CAGGCAGTTTGGGAAAATA..............................................................................................................191.000.00-----------------1.00-------------------------------------
..........................................................................................................................................................................................................................................CTGGCAGTGTTGGATGATGGATTTGAA..............................................................................................................................................................................................271.000.00-1.00-----------------------------------------------------
...................................................................GCCTCTTTTGGGCGGTCAGG............................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------1.00--------
.........................................................................................................................................................................................GACCAGTGAGCACTCTGGGGGGCGGG................................................................................................................................................................................................................................................2611.001.00----1.00--------------------------------------------------
................................................................................................................................................................................................................................................GTGTTGGATGATGGATTTGA...............................................................................................................................................................................................2011.001.00-------1.00-----------------------------------------------
...................................................................................................................................................................................................................................................................................................................CAGTACTTGGAGCCACAGGCAGT.........................................................................................................................2311.001.00----1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCCAGCCGGCAGTATG..........1911.001.00-1.00-----------------------------------------------------
................................................................................................CCCGGTTCTGTAGGGTCGGGC..............................................................................................................................................................................................................................................................................................................................................2111.001.00--------1.00----------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGACCCAGCCGGCAGTCTGC.........241.000.00-------------------1.00-----------------------------------
................................CTTGACAACCCCTTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------------------------1.00-------------
..................................................................................................................................................TCCTGGGAAGAGCCGCC................................................................................................................................................................................................................................................................................................1711.001.00-------------------------1.00-----------------------------
.....................................................................................................................................................................................................................................................................................................................GTACTTGGAGCCACAGG.............................................................................................................................1720.500.50----0.50--------------------------------------------------
..........................................................................................................TAGGGTCGGGCTAAC..........................................................................................................................................................................................................................................................................................................................................1520.500.50------------------------------------------------------0.50
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCGACCCAGCC...................1620.500.50-------0.50-----------------------------------------------
....................................................................................................................................................................................................................................................................................GTCCTGGGACAACGGC...............................................................................................................................................................1620.500.50-----------------------------------------------------0.50-
................................................................................................................................................................................................GAGCACTCTGGGGGGC...................................................................................................................................................................................................................................................1650.200.20--------0.20----------------------------------------------

Antisense strand
ACGGCGGAAACCCGTTCGCCGAGCCCAGCGAGCTTGACAACCCCTTTCAGGTGACTTGCGCCAGTCGGCCTCTTTTGGGCGGTCAGGTTGATTCTTCCCGGTTCTGTAGGGTCGGGCTAACTTGTATCCCCATTTGTGACATTTGATCCTGGGAAGAGCCGCCACGTGGGGTGACAGTGACTCCAGACCAGTGAGCACTCTGGGGGGCGGGCCCTGCCCCTTAATGGGCTGGTGCTGGCAGTGTTGGATGATGGATTTGAGGTAAATGTTGTCCCAGTCCTGGGACAACGGCGTGGCCCCGAAGGTGCAGTACTTGGAGCCACAGGCAGTTTGGGAATGGTCCCTGGGAATTCCCCTAGGTGGCACTGGGTGCCAGCTGAGACCCGGGTCTCTGCCCTCAGGACCCAGCTGTGATCCAGCACCGACCCAGCCGGCAGTATGCCACGCTTGA
...................................................................................................................................................((((((..(((.((((...((((((.((....(((((((((((((...((...((((((((((...)))))))))).)).)))))).)))).)))........................((((((((((....))))))))))..)).))))))..)))).....)))....)).)))).............................................................................................................................
........................................................................................................................................137...............................................................................................................................................................................................331......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR343337SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................................................................................GATGATGGATTTGAGAAG........................................................................................................................................................................................... 184.000.00-----2.001.00---------------1.00--------------------------------
.................................ACCTGAAAGGGGTTGTCAA............................................................................................................................................................................................................................................................................................................................................................................................................... 1913.003.003.00------------------------------------------------------
............................................AGGCCGACTGGCGCAAGTCACCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................ 2712.002.00----------------1.00-------------------------1.00------------
..........................................................................................................................................................................................................................................................................TGTTGTCCCAGTCCTAC........................................................................................................................................................................ 172.000.00--------------------------------------------1.00------1.00---
....................................................................................................................................................................................................................................................................................................................................GGCAGTTTGGGAATGACA............................................................................................................. 182.000.00---------2.00---------------------------------------------
..........CTGGGCTCGGCGAACGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................... 1812.002.002.00------------------------------------------------------
...........................................................................................................ATACAAGTTAGCCCGACCCT.................................................................................................................................................................................................................................................................................................................................... 2011.001.00--------------------------------------1.00----------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGTCGGTGCTGG.................... 1611.001.00----------------------------1.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGAGGGCAGAG............................................... 1501.001.00--------------------------------1.00----------------------
........................................................................................................................................................................................................................................................TGATGGATTTGAGGTAATCT....................................................................................................................................................................................... 201.000.00----------------------------------1.00--------------------
........................................................................................TGATTCTTCCCGGTTCCT......................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------------------------1.00-------------------
...................................................................ATCAACCTGACCGCCCAAAAGAGGC....................................................................................................................................................................................................................................................................................................................................................................... 2511.001.00-------------------------------------------1.00-----------
.......................................................TTGCGCCAGTCGGCCTGG.......................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------1.00----------------------------------------
.....................................................................TGACCGCCCAAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................. 1611.001.00--1.00----------------------------------------------------
.......................................................................................TTGATTCTTCCCGGTTAA.......................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------1.00----------------------------------------
.......................................................................................TTGATTCTTCCCGGTTAAA......................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------1.00--------------------------------------
........................................................................................TGATTCTTCCCGGTTCCA......................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------1.00---------------------------------
.....................................................................................................................................................................................................................................................................................................................................CCAGGGACCATTCCCAAACTGC........................................................................................................ 2211.001.00------------------------------------------------1.00------